Wall clock time and date at job start Fri Apr 10 2020 17:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 120.00103 * 2 1 4 4 H 1.48501 * 109.46658 * 269.99875 * 3 2 1 5 5 H 1.48501 * 109.47187 * 29.99198 * 3 2 1 6 6 H 1.48490 * 109.47289 * 149.99866 * 3 2 1 7 7 C 1.38813 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99718 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00487 * 180.02562 * 7 2 1 10 10 C 1.46491 * 120.00062 * 180.02562 * 9 7 2 11 11 H 1.08995 * 110.51431 * 32.46129 * 10 9 7 12 12 C 1.54839 * 110.45717 * 269.92363 * 10 9 7 13 13 C 1.54838 * 102.72994 * 203.05588 * 12 10 9 14 14 C 1.54145 * 104.35053 * 38.23090 * 13 12 10 15 15 H 1.09001 * 112.65523 * 99.31358 * 14 13 12 16 16 C 1.54458 * 108.79951 * 224.03893 * 14 13 12 17 17 N 1.48346 * 104.30667 * 138.54264 * 16 14 13 18 18 C 1.34776 * 128.19288 * 138.24911 * 17 16 14 19 19 O 1.21290 * 119.99571 * 179.97438 * 18 17 16 20 20 C 1.50699 * 120.00561 * 359.97438 * 18 17 16 21 21 N 1.46498 * 109.47181 * 179.97438 * 20 18 17 22 22 C 1.34944 * 126.03682 * 125.00157 * 21 20 18 23 23 C 1.35314 * 107.74791 * 179.97438 * 22 21 20 24 24 C 1.39864 * 107.92094 * 359.97438 * 23 22 21 25 25 N 1.30837 * 108.20087 * 359.74887 * 24 23 22 26 26 C 1.48333 * 103.60612 * 318.23309 * 17 16 14 27 27 C 1.54148 * 110.46001 * 154.99991 * 10 9 7 28 28 H 1.09005 * 112.64993 * 19.39035 * 27 10 9 29 29 H 0.96996 * 119.99749 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99396 * 359.97438 * 9 7 2 31 31 H 1.08997 * 110.76081 * 84.74350 * 12 10 9 32 32 H 1.09007 * 110.91888 * 321.43767 * 12 10 9 33 33 H 1.08992 * 110.46082 * 279.50627 * 13 12 10 34 34 H 1.09011 * 110.56323 * 156.99724 * 13 12 10 35 35 H 1.09003 * 110.46730 * 19.83848 * 16 14 13 36 36 H 1.09004 * 110.46810 * 257.25143 * 16 14 13 37 37 H 1.09005 * 109.46810 * 300.00022 * 20 18 17 38 38 H 1.08998 * 109.46739 * 59.99840 * 20 18 17 39 39 H 1.08009 * 126.12749 * 359.95269 * 22 21 20 40 40 H 1.08001 * 126.03787 * 180.02562 * 23 22 21 41 41 H 1.07996 * 125.90206 * 180.02562 * 24 23 22 42 42 H 1.08997 * 110.46912 * 160.47839 * 26 17 16 43 43 H 1.09007 * 110.46888 * 282.93407 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5574 -3.2322 -0.5472 12 6 4.3838 -2.9389 1.4518 13 6 5.6065 -3.8741 1.2853 14 6 6.4735 -3.1826 0.2146 15 1 7.2982 -2.6144 0.6449 16 6 6.9682 -4.2472 -0.7891 17 7 6.8337 -3.5928 -2.1136 18 6 7.6944 -3.6252 -3.1503 19 8 7.4325 -3.0306 -4.1746 20 6 8.9819 -4.4000 -3.0370 21 7 9.7359 -4.2798 -4.2873 22 6 11.0079 -3.8462 -4.4087 23 6 11.3333 -3.8847 -5.7216 24 6 10.2222 -4.3587 -6.4266 25 7 9.2660 -4.6013 -5.5672 26 6 5.5278 -2.8947 -2.0270 27 6 5.5153 -2.2829 -0.6087 28 1 5.8355 -1.2409 -0.6121 29 1 -0.4849 0.8400 -0.0004 30 1 3.8647 -0.3621 0.0007 31 1 3.5289 -3.4873 1.8473 32 1 4.6290 -2.0930 2.0942 33 1 5.2893 -4.8584 0.9411 34 1 6.1550 -3.9581 2.2236 35 1 6.3423 -5.1382 -0.7391 36 1 8.0101 -4.5008 -0.5933 37 1 9.5753 -4.0003 -2.2146 38 1 8.7586 -5.4499 -2.8472 39 1 11.6511 -3.5254 -3.6025 40 1 12.2834 -3.6006 -6.1494 41 1 10.1651 -4.5040 -7.4952 42 1 5.4642 -2.1103 -2.7811 43 1 4.7081 -3.6034 -2.1456 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026198303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:04 Heat of formation + Delta-G solvation = 48.764920 kcal Electronic energy + Delta-G solvation = -24703.038683 eV Core-core repulsion = 21170.638028 eV Total energy + Delta-G solvation = -3532.400655 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.12126 -41.33623 -39.64562 -36.80139 -35.04894 -34.29471 -33.10070 -31.26557 -30.85125 -30.00460 -28.30002 -26.63246 -24.85207 -24.26844 -22.23918 -21.94358 -21.58571 -20.58135 -20.17280 -19.37540 -18.42848 -18.03259 -17.32114 -16.84105 -16.59208 -16.22639 -15.74539 -15.38201 -15.15375 -14.88081 -14.71565 -14.62471 -14.33406 -14.00558 -13.96782 -13.61717 -13.47007 -13.15849 -13.10664 -12.94364 -12.63948 -12.24494 -12.11867 -11.95973 -11.83432 -11.58472 -11.53321 -11.44861 -11.41216 -11.14936 -10.93392 -10.32072 -9.85207 -9.50060 -9.28267 -8.04034 -5.36162 0.94782 1.33994 1.37991 1.44480 1.45600 1.49672 1.95821 2.01476 2.46037 3.20671 3.29520 3.41960 3.65121 3.69263 3.75019 3.89467 4.06108 4.11612 4.20499 4.23764 4.34596 4.43858 4.48521 4.56112 4.62307 4.69777 4.73005 4.80868 4.91959 4.92745 5.03028 5.04504 5.11427 5.17059 5.29525 5.41328 5.48922 5.59050 5.73968 5.77169 6.12646 6.21187 6.49539 6.80635 7.02202 7.07105 7.84976 8.01600 9.17757 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021063 B = 0.003134 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.048142 B = 8931.934205 C = 9702.256221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.066 4.066 3 Si 0.952 3.048 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.249 1.249 7 C -0.224 4.224 8 H 0.058 0.942 9 N -0.751 5.751 10 C 0.176 3.824 11 H 0.050 0.950 12 C -0.140 4.140 13 C -0.101 4.101 14 C -0.090 4.090 15 H 0.111 0.889 16 C 0.102 3.898 17 N -0.621 5.621 18 C 0.511 3.489 19 O -0.578 6.578 20 C 0.125 3.875 21 N -0.376 5.376 22 C 0.057 3.943 23 C -0.285 4.285 24 C 0.025 3.975 25 N -0.330 5.330 26 C 0.115 3.885 27 C -0.105 4.105 28 H 0.076 0.924 29 H 0.257 0.743 30 H 0.363 0.637 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.125 0.875 37 H 0.174 0.826 38 H 0.138 0.862 39 H 0.218 0.782 40 H 0.171 0.829 41 H 0.196 0.804 42 H 0.046 0.954 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.077 -12.722 0.192 31.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.257 4.257 3 Si 0.779 3.221 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.174 1.174 7 C -0.355 4.355 8 H 0.076 0.924 9 N -0.393 5.393 10 C 0.068 3.932 11 H 0.068 0.932 12 C -0.180 4.180 13 C -0.140 4.140 14 C -0.109 4.109 15 H 0.129 0.871 16 C -0.019 4.019 17 N -0.355 5.355 18 C 0.299 3.701 19 O -0.456 6.456 20 C 0.000 4.000 21 N -0.160 5.160 22 C -0.088 4.088 23 C -0.314 4.314 24 C -0.161 4.161 25 N -0.151 5.151 26 C -0.008 4.008 27 C -0.125 4.125 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.197 0.803 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.143 0.857 37 H 0.191 0.809 38 H 0.156 0.844 39 H 0.235 0.765 40 H 0.188 0.812 41 H 0.213 0.787 42 H 0.065 0.935 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 27.543 -12.942 -0.175 30.432 hybrid contribution -0.115 1.839 -0.560 1.925 sum 27.427 -11.104 -0.735 29.599 Atomic orbital electron populations 1.69877 1.07102 1.26531 1.60115 1.25474 0.96063 1.01122 1.03081 0.85456 0.78831 0.80030 0.77734 1.21254 1.22263 1.17365 1.19038 0.82731 0.93287 1.40487 0.92448 1.42844 1.02424 1.03990 1.90053 1.21415 0.89876 0.86880 0.95054 0.93159 1.23036 0.98237 0.99191 0.97560 1.22349 0.94494 0.97998 0.99114 1.22758 0.97599 0.95498 0.95050 0.87106 1.23120 1.04900 0.95311 0.78598 1.49260 1.19587 1.51176 1.15445 1.21006 0.85878 0.81381 0.81804 1.90789 1.77211 1.46912 1.30735 1.21754 0.90441 1.03537 0.84220 1.48348 1.10703 1.51193 1.05724 1.23306 0.86220 0.98815 1.00445 1.21896 1.02195 1.14415 0.92917 1.24399 0.91675 0.99268 1.00796 1.77436 1.24124 1.24315 0.89215 1.22413 0.85257 0.95959 0.97152 1.22940 0.95986 0.99854 0.93709 0.90579 0.93461 0.80342 0.93346 0.92506 0.89969 0.89077 0.88961 0.85690 0.80852 0.84425 0.76547 0.81173 0.78709 0.93548 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.98 13.97 21.65 0.30 -63.67 16 2 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 3 Si 0.95 46.28 27.74 68.60 1.90 48.19 16 4 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.25 -10.80 6.52 99.48 0.65 -10.15 16 7 C -0.22 -12.72 10.44 84.03 0.88 -11.84 16 8 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 9 N -0.75 -34.23 5.01 -318.15 -1.59 -35.82 16 10 C 0.18 6.10 3.06 46.01 0.14 6.24 16 11 H 0.05 1.89 7.13 -2.39 -0.02 1.88 16 12 C -0.14 -4.00 6.57 31.85 0.21 -3.79 16 13 C -0.10 -1.68 6.36 31.61 0.20 -1.48 16 14 C -0.09 -1.43 3.95 -9.20 -0.04 -1.46 16 15 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 16 C 0.10 1.18 6.46 86.52 0.56 1.74 16 17 N -0.62 -13.51 3.31 -806.64 -2.67 -16.18 16 18 C 0.51 12.82 7.96 87.66 0.70 13.52 16 19 O -0.58 -22.02 16.01 -3.06 -0.05 -22.07 16 20 C 0.12 1.72 5.97 85.63 0.51 2.23 16 21 N -0.38 -7.77 3.39 -351.79 -1.19 -8.97 16 22 C 0.06 0.83 11.45 83.54 0.96 1.78 16 23 C -0.29 -4.75 10.80 21.99 0.24 -4.51 16 24 C 0.02 0.55 12.03 85.23 1.02 1.58 16 25 N -0.33 -9.33 11.66 -57.03 -0.67 -10.00 16 26 C 0.12 3.36 6.58 86.52 0.57 3.93 16 27 C -0.10 -2.81 3.63 -9.19 -0.03 -2.84 16 28 H 0.08 2.22 7.83 -2.38 -0.02 2.20 16 29 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 30 H 0.36 16.13 5.49 -92.71 -0.51 15.62 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.08 1.17 7.18 -2.39 -0.02 1.15 16 34 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.09 0.95 7.20 -2.39 -0.02 0.93 16 36 H 0.13 0.30 7.32 -2.38 -0.02 0.29 16 37 H 0.17 0.54 7.91 -2.38 -0.02 0.52 16 38 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.22 0.92 8.06 -2.91 -0.02 0.90 16 40 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 41 H 0.20 3.25 8.06 -2.91 -0.02 3.22 16 42 H 0.05 1.66 7.88 -2.39 -0.02 1.64 16 43 H 0.07 2.15 7.21 -2.38 -0.02 2.14 16 Total: -1.00 -89.14 348.98 2.86 -86.28 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.45 Total: 20.63 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 6.38 Total: 1.62 kcal Atomic # 7 Polarization: -128.82 SS G_CDS: -5.82 Total: -134.64 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.05 Total: -22.07 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.90 Total: 48.19 kcal Total: -89.14 2.86 -86.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026198303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.045 kcal (2) G-P(sol) polarization free energy of solvation -89.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds