Wall clock time and date at job start Fri Apr 10 2020 17:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 119.99909 * 2 1 4 4 H 1.48500 * 109.46830 * 239.99913 * 3 2 1 5 5 H 1.48495 * 109.46956 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47208 * 119.99782 * 3 2 1 7 7 C 1.38809 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00118 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00128 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99837 * 179.97438 * 9 7 2 11 11 H 1.08995 * 110.40571 * 36.01932 * 10 9 7 12 12 C 1.54834 * 110.45691 * 273.55202 * 10 9 7 13 13 C 1.54838 * 102.72934 * 202.93250 * 12 10 9 14 14 C 1.54144 * 104.35140 * 38.22725 * 13 12 10 15 15 H 1.08996 * 111.89572 * 99.84930 * 14 13 12 16 16 C 1.54460 * 108.79592 * 224.04558 * 14 13 12 17 17 N 1.48346 * 104.30735 * 138.53969 * 16 14 13 18 18 C 1.34776 * 128.19488 * 137.96988 * 17 16 14 19 19 O 1.21277 * 119.99920 * 180.02562 * 18 17 16 20 20 C 1.50704 * 120.00136 * 0.02781 * 18 17 16 21 21 C 1.50697 * 109.47387 * 180.02562 * 20 18 17 22 22 C 1.39867 * 125.89960 * 124.99510 * 21 20 18 23 23 C 1.35316 * 107.91975 * 180.02562 * 22 21 20 24 24 N 1.34952 * 107.74770 * 0.02562 * 23 22 21 25 25 H 0.96997 * 126.03716 * 180.02562 * 24 23 22 26 26 N 1.30840 * 125.89689 * 304.69563 * 21 20 18 27 27 C 1.48335 * 103.60515 * 318.23456 * 17 16 14 28 28 C 1.54145 * 110.56142 * 158.56199 * 10 9 7 29 29 H 1.09000 * 111.89938 * 19.91588 * 28 10 9 30 30 H 0.96999 * 120.00173 * 0.02562 * 1 2 3 31 31 H 0.96995 * 119.99730 * 0.02562 * 9 7 2 32 32 H 1.08993 * 110.76182 * 84.61798 * 12 10 9 33 33 H 1.09003 * 110.91544 * 321.31002 * 12 10 9 34 34 H 1.08995 * 110.45674 * 279.50900 * 13 12 10 35 35 H 1.09000 * 110.56562 * 156.99805 * 13 12 10 36 36 H 1.09003 * 110.46995 * 19.83836 * 16 14 13 37 37 H 1.09005 * 110.46632 * 257.24402 * 16 14 13 38 38 H 1.09003 * 109.47135 * 299.99650 * 20 18 17 39 39 H 1.08996 * 109.47324 * 59.99674 * 20 18 17 40 40 H 1.07998 * 126.04192 * 0.02971 * 22 21 20 41 41 H 1.08001 * 126.13042 * 180.02562 * 23 22 21 42 42 H 1.08999 * 110.46399 * 160.47430 * 27 17 16 43 43 H 1.09004 * 110.46577 * 283.05285 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 1 2.9641 -3.5725 0.6016 12 6 2.4054 -4.0811 -1.4464 13 6 2.5992 -5.6118 -1.3162 14 6 1.5128 -6.0506 -0.3146 15 1 0.6438 -6.4749 -0.8175 16 6 2.1363 -7.0407 0.6938 17 7 1.5661 -6.6383 2.0029 18 6 1.1071 -7.4315 2.9911 19 8 0.6679 -6.9396 4.0090 20 6 1.1396 -8.9297 2.8314 21 6 0.5734 -9.5792 4.0678 22 6 -0.4814 -10.4970 4.1023 23 6 -0.6901 -10.8431 5.3937 24 7 0.2008 -10.1679 6.1497 25 1 0.2851 -10.2189 7.1147 26 7 0.9874 -9.3860 5.2939 27 6 1.6147 -5.1563 1.9640 28 6 1.1658 -4.7971 0.5303 29 1 0.1069 -4.5454 0.4715 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0016 32 1 3.3261 -3.6020 -1.7791 33 1 1.5849 -3.8521 -2.1264 34 1 3.5913 -5.8383 -0.9256 35 1 2.4492 -6.1000 -2.2791 36 1 3.2217 -6.9412 0.7043 37 1 1.8486 -8.0637 0.4511 38 1 0.5426 -9.2159 1.9655 39 1 2.1691 -9.2575 2.6874 40 1 -1.0321 -10.8645 3.2491 41 1 -1.4359 -11.5358 5.7548 42 1 0.9268 -4.7331 2.6960 43 1 2.6299 -4.8034 2.1452 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026224485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:12 Heat of formation + Delta-G solvation = 56.944656 kcal Electronic energy + Delta-G solvation = -24526.223386 eV Core-core repulsion = 20994.177431 eV Total energy + Delta-G solvation = -3532.045955 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.34548 -40.12139 -38.31358 -35.09331 -33.30686 -33.09320 -30.95638 -30.10421 -29.95073 -28.40385 -28.03414 -24.99542 -23.73461 -22.83138 -21.76991 -20.54845 -19.94414 -19.04148 -18.65457 -18.28406 -17.20593 -16.84543 -15.92443 -15.53973 -15.22934 -14.74290 -14.36168 -14.16516 -13.91546 -13.72101 -13.51799 -13.19994 -13.01406 -12.88445 -12.69745 -12.25700 -12.09536 -11.70231 -11.63596 -11.12317 -10.84705 -10.76735 -10.75101 -10.65840 -10.34408 -10.21663 -10.20269 -9.92836 -9.76836 -9.63611 -9.46566 -8.89863 -8.84709 -8.57183 -6.92349 -5.74409 -3.03082 1.75420 2.50661 2.71756 2.77351 3.15596 3.45845 3.50419 3.51260 4.36786 4.46937 4.59048 4.67158 4.68562 4.91013 4.98498 4.99206 5.21696 5.32324 5.43424 5.47496 5.50713 5.55093 5.58911 5.65654 5.76943 5.80345 5.90289 5.98403 5.99543 6.10004 6.22296 6.29536 6.35998 6.41287 6.47540 6.58989 6.70270 6.82955 7.07802 7.10263 7.53798 7.70948 7.72042 8.30592 8.44256 9.55218 10.13210 10.47106 11.48147 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.023146 B = 0.002868 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.406848 B = 9761.692399 C =10551.486885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.721 5.721 10 C 0.183 3.817 11 H 0.055 0.945 12 C -0.142 4.142 13 C -0.117 4.117 14 C -0.102 4.102 15 H 0.085 0.915 16 C 0.103 3.897 17 N -0.627 5.627 18 C 0.534 3.466 19 O -0.527 6.527 20 C -0.055 4.055 21 C 0.086 3.914 22 C -0.266 4.266 23 C 0.053 3.947 24 N -0.478 5.478 25 H 0.438 0.562 26 N -0.261 5.261 27 C 0.116 3.884 28 C -0.106 4.106 29 H 0.088 0.912 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.148 0.852 41 H 0.175 0.825 42 H 0.081 0.919 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.641 -25.158 3.565 25.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.361 5.361 10 C 0.072 3.928 11 H 0.073 0.927 12 C -0.183 4.183 13 C -0.155 4.155 14 C -0.122 4.122 15 H 0.103 0.897 16 C -0.020 4.020 17 N -0.362 5.362 18 C 0.322 3.678 19 O -0.402 6.402 20 C -0.097 4.097 21 C -0.082 4.082 22 C -0.296 4.296 23 C -0.094 4.094 24 N -0.186 5.186 25 H 0.282 0.718 26 N -0.085 5.085 27 C -0.006 4.006 28 C -0.126 4.126 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.166 0.834 41 H 0.192 0.808 42 H 0.099 0.901 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.285 -24.199 4.995 24.815 hybrid contribution -0.505 0.446 -0.133 0.687 sum 1.780 -23.753 4.863 24.311 Atomic orbital electron populations 1.69646 1.05104 1.25768 1.57577 1.24736 0.95486 0.97673 1.02996 0.86290 0.78538 0.83672 0.77818 1.21307 1.21746 1.21278 1.19181 0.90935 0.84132 1.42791 0.91258 1.42441 1.05700 0.99716 1.88247 1.21141 0.93465 0.85203 0.92955 0.92746 1.23213 1.01396 0.92815 1.00843 1.22410 0.97399 0.97742 0.97972 1.22731 0.98650 0.95265 0.95505 0.89686 1.22763 0.98127 0.98772 0.82289 1.49228 1.61953 1.08079 1.16958 1.19908 0.77596 0.88064 0.82265 1.90756 1.45667 1.75955 1.27843 1.19996 1.03426 0.91725 0.94538 1.21572 0.96520 0.97052 0.93022 1.21387 1.04247 1.06658 0.97272 1.22546 0.96170 0.98713 0.92016 1.46391 1.27399 1.35154 1.09685 0.71835 1.77423 1.16776 1.13742 1.00529 1.22574 1.01837 0.78374 0.97787 1.23016 1.01353 0.95039 0.93171 0.89341 0.93467 0.78191 0.92297 0.91580 0.91767 0.92256 0.90596 0.90704 0.87032 0.87401 0.83449 0.80752 0.90085 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.72 -17.67 5.22 -51.91 -0.27 -17.94 16 10 C 0.18 3.45 3.03 -66.36 -0.20 3.25 16 11 H 0.05 1.05 7.15 -51.93 -0.37 0.68 16 12 C -0.14 -2.34 6.57 -24.80 -0.16 -2.50 16 13 C -0.12 -1.40 6.36 -25.16 -0.16 -1.56 16 14 C -0.10 -1.23 3.95 -88.15 -0.35 -1.58 16 15 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 16 C 0.10 1.06 6.46 -2.26 -0.01 1.05 16 17 N -0.63 -8.62 3.31 -168.89 -0.56 -9.18 16 18 C 0.53 7.96 7.92 -10.98 -0.09 7.87 16 19 O -0.53 -10.35 15.85 5.56 0.09 -10.26 16 20 C -0.06 -0.58 5.26 -29.03 -0.15 -0.73 16 21 C 0.09 1.07 6.01 -82.41 -0.50 0.57 16 22 C -0.27 -2.60 10.72 -40.01 -0.43 -3.03 16 23 C 0.05 0.43 11.99 -17.22 -0.21 0.22 16 24 N -0.48 -4.71 7.36 30.45 0.22 -4.49 16 25 H 0.44 2.86 8.96 -182.61 -1.64 1.22 16 26 N -0.26 -3.67 12.06 33.67 0.41 -3.26 16 27 C 0.12 1.87 6.58 -2.26 -0.01 1.85 16 28 C -0.11 -1.68 3.65 -88.15 -0.32 -2.00 16 29 H 0.09 1.56 7.78 -51.93 -0.40 1.15 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.38 10.10 7.57 -40.82 -0.31 9.79 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 0.70 7.18 -51.93 -0.37 0.32 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.72 7.20 -51.93 -0.37 0.35 16 37 H 0.07 0.55 7.32 -51.93 -0.38 0.17 16 38 H 0.11 0.84 7.96 -51.93 -0.41 0.42 16 39 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.15 1.07 8.06 -52.49 -0.42 0.64 16 41 H 0.18 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.08 1.50 7.88 -51.93 -0.41 1.09 16 43 H 0.07 1.19 7.20 -51.93 -0.37 0.82 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -36.15 350.88 -9.51 -45.66 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -7.55 Total: 8.01 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -2.84 Total: -3.76 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: 0.52 Total: -62.37 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.15 -9.51 -45.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026224485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.605 kcal (2) G-P(sol) polarization free energy of solvation -36.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds