Wall clock time and date at job start Fri Apr 10 2020 17:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 119.99909 * 2 1 4 4 H 1.48500 * 109.46830 * 239.99913 * 3 2 1 5 5 H 1.48495 * 109.46956 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47208 * 119.99782 * 3 2 1 7 7 C 1.38809 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00118 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00128 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99837 * 179.97438 * 9 7 2 11 11 H 1.08995 * 110.40571 * 36.01932 * 10 9 7 12 12 C 1.54834 * 110.45691 * 273.55202 * 10 9 7 13 13 C 1.54838 * 102.72934 * 202.93250 * 12 10 9 14 14 C 1.54144 * 104.35140 * 38.22725 * 13 12 10 15 15 H 1.08996 * 111.89572 * 99.84930 * 14 13 12 16 16 C 1.54460 * 108.79592 * 224.04558 * 14 13 12 17 17 N 1.48346 * 104.30735 * 138.53969 * 16 14 13 18 18 C 1.34776 * 128.19488 * 137.96988 * 17 16 14 19 19 O 1.21277 * 119.99920 * 180.02562 * 18 17 16 20 20 C 1.50704 * 120.00136 * 0.02781 * 18 17 16 21 21 C 1.50697 * 109.47387 * 180.02562 * 20 18 17 22 22 C 1.39867 * 125.89960 * 124.99510 * 21 20 18 23 23 C 1.35316 * 107.91975 * 180.02562 * 22 21 20 24 24 N 1.34952 * 107.74770 * 0.02562 * 23 22 21 25 25 H 0.96997 * 126.03716 * 180.02562 * 24 23 22 26 26 N 1.30840 * 125.89689 * 304.69563 * 21 20 18 27 27 C 1.48335 * 103.60515 * 318.23456 * 17 16 14 28 28 C 1.54145 * 110.56142 * 158.56199 * 10 9 7 29 29 H 1.09000 * 111.89938 * 19.91588 * 28 10 9 30 30 H 0.96999 * 120.00173 * 0.02562 * 1 2 3 31 31 H 0.96995 * 119.99730 * 0.02562 * 9 7 2 32 32 H 1.08993 * 110.76182 * 84.61798 * 12 10 9 33 33 H 1.09003 * 110.91544 * 321.31002 * 12 10 9 34 34 H 1.08995 * 110.45674 * 279.50900 * 13 12 10 35 35 H 1.09000 * 110.56562 * 156.99805 * 13 12 10 36 36 H 1.09003 * 110.46995 * 19.83836 * 16 14 13 37 37 H 1.09005 * 110.46632 * 257.24402 * 16 14 13 38 38 H 1.09003 * 109.47135 * 299.99650 * 20 18 17 39 39 H 1.08996 * 109.47324 * 59.99674 * 20 18 17 40 40 H 1.07998 * 126.04192 * 0.02971 * 22 21 20 41 41 H 1.08001 * 126.13042 * 180.02562 * 23 22 21 42 42 H 1.08999 * 110.46399 * 160.47430 * 27 17 16 43 43 H 1.09004 * 110.46577 * 283.05285 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 1 2.9641 -3.5725 0.6016 12 6 2.4054 -4.0811 -1.4464 13 6 2.5992 -5.6118 -1.3162 14 6 1.5128 -6.0506 -0.3146 15 1 0.6438 -6.4749 -0.8175 16 6 2.1363 -7.0407 0.6938 17 7 1.5661 -6.6383 2.0029 18 6 1.1071 -7.4315 2.9911 19 8 0.6679 -6.9396 4.0090 20 6 1.1396 -8.9297 2.8314 21 6 0.5734 -9.5792 4.0678 22 6 -0.4814 -10.4970 4.1023 23 6 -0.6901 -10.8431 5.3937 24 7 0.2008 -10.1679 6.1497 25 1 0.2851 -10.2189 7.1147 26 7 0.9874 -9.3860 5.2939 27 6 1.6147 -5.1563 1.9640 28 6 1.1658 -4.7971 0.5303 29 1 0.1069 -4.5454 0.4715 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0016 32 1 3.3261 -3.6020 -1.7791 33 1 1.5849 -3.8521 -2.1264 34 1 3.5913 -5.8383 -0.9256 35 1 2.4492 -6.1000 -2.2791 36 1 3.2217 -6.9412 0.7043 37 1 1.8486 -8.0637 0.4511 38 1 0.5426 -9.2159 1.9655 39 1 2.1691 -9.2575 2.6874 40 1 -1.0321 -10.8645 3.2491 41 1 -1.4359 -11.5358 5.7548 42 1 0.9268 -4.7331 2.6960 43 1 2.6299 -4.8034 2.1452 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026224485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:11 Heat of formation + Delta-G solvation = 30.540176 kcal Electronic energy + Delta-G solvation = -24527.368371 eV Core-core repulsion = 20994.177431 eV Total energy + Delta-G solvation = -3533.190940 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.09313 -41.26237 -39.54102 -36.61741 -34.95311 -33.92666 -32.68392 -31.13629 -30.80481 -29.77677 -29.01276 -26.60851 -24.85026 -24.55605 -22.49573 -21.62011 -21.05454 -20.31492 -19.69475 -19.03099 -18.96469 -18.07058 -17.20128 -16.65903 -16.59362 -15.91018 -15.79859 -15.31015 -15.07827 -14.80930 -14.57109 -14.44130 -14.34991 -13.93011 -13.67206 -13.51501 -13.23206 -12.97863 -12.91428 -12.80486 -12.56802 -12.35193 -12.08202 -11.92602 -11.66280 -11.54513 -11.49948 -11.38460 -11.34936 -10.94485 -10.78844 -10.33552 -9.72504 -9.58665 -8.95534 -7.93040 -5.20635 1.04630 1.46124 1.49261 1.55025 1.67060 1.71827 2.07863 2.19729 2.56969 3.36048 3.47022 3.57165 3.68201 3.81235 3.93633 4.10369 4.13272 4.28720 4.37248 4.41529 4.52296 4.54799 4.56210 4.65504 4.69841 4.76046 4.80494 4.89134 4.90841 4.99744 5.09634 5.13050 5.15749 5.23588 5.33405 5.46023 5.50391 5.57668 5.67174 5.72984 6.29688 6.53645 6.65077 6.80366 7.20300 7.34838 8.13555 8.34639 9.30624 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.023146 B = 0.002868 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.406848 B = 9761.692399 C =10551.486885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.970 3.030 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.281 1.281 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.736 5.736 10 C 0.173 3.827 11 H 0.049 0.951 12 C -0.138 4.138 13 C -0.101 4.101 14 C -0.092 4.092 15 H 0.102 0.898 16 C 0.105 3.895 17 N -0.624 5.624 18 C 0.527 3.473 19 O -0.587 6.587 20 C -0.046 4.046 21 C 0.066 3.934 22 C -0.285 4.285 23 C 0.065 3.935 24 N -0.480 5.480 25 H 0.448 0.552 26 N -0.324 5.324 27 C 0.118 3.882 28 C -0.101 4.101 29 H 0.063 0.937 30 H 0.249 0.751 31 H 0.370 0.630 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.121 0.879 38 H 0.149 0.851 39 H 0.134 0.866 40 H 0.173 0.827 41 H 0.220 0.780 42 H 0.041 0.959 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.753 -28.588 2.198 28.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.799 3.201 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.207 1.207 7 C -0.367 4.367 8 H 0.094 0.906 9 N -0.376 5.376 10 C 0.065 3.935 11 H 0.067 0.933 12 C -0.179 4.179 13 C -0.139 4.139 14 C -0.112 4.112 15 H 0.121 0.879 16 C -0.016 4.016 17 N -0.358 5.358 18 C 0.317 3.683 19 O -0.467 6.467 20 C -0.086 4.086 21 C -0.101 4.101 22 C -0.314 4.314 23 C -0.082 4.082 24 N -0.189 5.189 25 H 0.293 0.707 26 N -0.148 5.148 27 C -0.005 4.005 28 C -0.121 4.121 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.202 0.798 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.139 0.861 38 H 0.167 0.833 39 H 0.151 0.849 40 H 0.190 0.810 41 H 0.236 0.764 42 H 0.060 0.940 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.466 -27.691 3.592 28.137 hybrid contribution -0.861 1.455 0.355 1.728 sum 2.605 -26.236 3.947 26.659 Atomic orbital electron populations 1.69813 1.06640 1.25942 1.59932 1.25543 0.96327 1.01073 1.04188 0.85254 0.77198 0.79434 0.78170 1.20135 1.22421 1.20689 1.19585 0.91377 0.85308 1.40437 0.90639 1.42672 1.05268 1.01143 1.88473 1.21435 0.93259 0.83947 0.94908 0.93326 1.23034 1.00218 0.96711 0.97892 1.22359 0.98381 0.93658 0.99498 1.22739 0.99595 0.93441 0.95414 0.87941 1.23040 0.98822 1.00463 0.79266 1.49295 1.61605 1.06596 1.18294 1.20834 0.76204 0.89975 0.81318 1.90728 1.48309 1.77314 1.30338 1.20126 1.05693 0.87533 0.95297 1.22043 0.97377 0.97626 0.93081 1.21803 1.04048 1.06645 0.98873 1.23304 0.95586 0.97845 0.91514 1.46462 1.27359 1.34814 1.10265 0.70692 1.77324 1.19341 1.16153 1.01965 1.22335 1.00579 0.80707 0.96873 1.22835 0.99214 0.96167 0.93931 0.91805 0.94196 0.79827 0.92923 0.93480 0.89652 0.89435 0.88873 0.86131 0.83302 0.84859 0.81002 0.76394 0.94007 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.05 13.06 21.65 0.28 -60.77 16 2 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 3 Si 0.97 47.14 29.55 68.60 2.03 49.16 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 5 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 7 C -0.24 -13.19 9.97 84.03 0.84 -12.36 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -37.50 5.22 -318.14 -1.66 -39.16 16 10 C 0.17 6.60 3.03 46.00 0.14 6.74 16 11 H 0.05 1.90 7.15 -2.39 -0.02 1.89 16 12 C -0.14 -4.40 6.57 31.85 0.21 -4.19 16 13 C -0.10 -2.02 6.36 31.61 0.20 -1.82 16 14 C -0.09 -1.92 3.95 -9.19 -0.04 -1.96 16 15 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 16 C 0.11 1.69 6.46 86.52 0.56 2.25 16 17 N -0.62 -16.25 3.31 -806.64 -2.67 -18.92 16 18 C 0.53 15.26 7.92 87.66 0.69 15.96 16 19 O -0.59 -23.96 15.85 -3.02 -0.05 -24.01 16 20 C -0.05 -0.83 5.26 29.10 0.15 -0.67 16 21 C 0.07 1.53 6.01 43.10 0.26 1.79 16 22 C -0.28 -4.82 10.72 21.99 0.24 -4.59 16 23 C 0.06 0.89 11.99 83.54 1.00 1.89 16 24 N -0.48 -9.03 7.36 -57.59 -0.42 -9.45 16 25 H 0.45 5.62 8.96 -213.33 -1.91 3.71 16 26 N -0.32 -9.04 12.06 -47.39 -0.57 -9.61 16 27 C 0.12 3.92 6.58 86.52 0.57 4.49 16 28 C -0.10 -3.24 3.65 -9.19 -0.03 -3.27 16 29 H 0.06 2.36 7.78 -2.39 -0.02 2.34 16 30 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 31 H 0.37 20.56 7.57 -92.71 -0.70 19.86 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 1.41 7.18 -2.39 -0.02 1.40 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 1.27 7.20 -2.39 -0.02 1.25 16 37 H 0.12 0.95 7.32 -2.38 -0.02 0.94 16 38 H 0.15 1.51 7.96 -2.39 -0.02 1.49 16 39 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 41 H 0.22 0.78 8.06 -2.91 -0.02 0.76 16 42 H 0.04 1.68 7.88 -2.39 -0.02 1.66 16 43 H 0.07 2.40 7.20 -2.39 -0.02 2.38 16 Total: -1.00 -85.53 350.88 0.62 -84.91 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: -1.57 Total: 27.77 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 5.26 Total: 0.08 kcal Atomic # 7 Polarization: -132.87 SS G_CDS: -5.05 Total: -137.92 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.16 kcal Total: -85.53 0.62 -84.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026224485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.449 kcal (2) G-P(sol) polarization free energy of solvation -85.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds