Wall clock time and date at job start Fri Apr 10 2020 17:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99830 * 2 1 4 4 H 1.48505 * 109.47044 * 269.99996 * 3 2 1 5 5 H 1.48495 * 109.47463 * 30.00139 * 3 2 1 6 6 H 1.48495 * 109.47376 * 150.00350 * 3 2 1 7 7 C 1.38810 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99813 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00101 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99900 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.05347 * 324.59694 * 10 9 7 12 12 C 1.53729 * 109.91130 * 203.41325 * 10 9 7 13 13 C 1.54099 * 106.66920 * 241.52265 * 12 10 9 14 14 C 1.54453 * 104.73460 * 336.58886 * 13 12 10 15 15 H 1.08993 * 114.49586 * 271.97558 * 14 13 12 16 16 C 1.54901 * 108.83420 * 143.49628 * 14 13 12 17 17 N 1.47355 * 105.01057 * 288.83130 * 16 14 13 18 18 C 1.34775 * 125.69994 * 155.09150 * 17 16 14 19 19 O 1.21277 * 119.99944 * 179.97438 * 18 17 16 20 20 C 1.50693 * 120.00128 * 359.68818 * 18 17 16 21 21 C 1.50701 * 109.47229 * 179.97438 * 20 18 17 22 22 C 1.39868 * 125.89496 * 125.00551 * 21 20 18 23 23 C 1.35321 * 107.91886 * 180.02562 * 22 21 20 24 24 N 1.34946 * 107.74582 * 359.97438 * 23 22 21 25 25 H 0.97001 * 126.03836 * 180.02562 * 24 23 22 26 26 N 1.30831 * 125.89992 * 304.69255 * 21 20 18 27 27 C 1.47033 * 108.59604 * 334.82630 * 17 16 14 28 28 C 1.53899 * 109.91764 * 85.79881 * 10 9 7 29 29 H 1.09005 * 113.49647 * 264.65150 * 28 10 9 30 30 H 0.97000 * 120.00489 * 359.97438 * 1 2 3 31 31 H 0.96994 * 120.00261 * 359.97438 * 9 7 2 32 32 H 1.09004 * 110.01860 * 122.21833 * 12 10 9 33 33 H 1.08996 * 110.05502 * 0.84802 * 12 10 9 34 34 H 1.09003 * 110.38272 * 217.77940 * 13 12 10 35 35 H 1.09001 * 110.38910 * 95.41192 * 13 12 10 36 36 H 1.08997 * 110.44493 * 169.91786 * 16 14 13 37 37 H 1.08994 * 110.28768 * 47.66571 * 16 14 13 38 38 H 1.09001 * 109.47533 * 300.00407 * 20 18 17 39 39 H 1.08999 * 109.47111 * 60.00311 * 20 18 17 40 40 H 1.07997 * 126.04420 * 0.02562 * 22 21 20 41 41 H 1.08002 * 126.12725 * 179.97438 * 23 22 21 42 42 H 1.09001 * 109.82591 * 122.04862 * 27 17 16 43 43 H 1.08999 * 109.82968 * 242.92292 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9682 -3.5634 -0.5909 12 6 1.1716 -4.7736 -0.5729 13 6 0.9906 -5.8152 0.5484 14 6 2.2054 -5.6056 1.4790 15 1 3.0906 -6.1782 1.2025 16 6 1.7555 -5.8236 2.9452 17 7 0.9140 -4.6566 3.2636 18 6 -0.0538 -4.6172 4.2008 19 8 -0.6855 -3.5971 4.3775 20 6 -0.3553 -5.8424 5.0246 21 6 -1.4694 -5.5357 5.9919 22 6 -2.6670 -6.2475 6.1159 23 6 -3.4009 -5.6613 7.0901 24 7 -2.6924 -4.6160 7.5660 25 1 -2.9711 -4.0119 8.2719 26 7 -1.4810 -4.5612 6.8647 27 6 1.3110 -3.5405 2.3926 28 6 2.4109 -4.0571 1.4452 29 1 3.4121 -3.7510 1.7487 30 1 -0.4851 0.8400 0.0004 31 1 0.3556 -2.3881 0.0005 32 1 1.6597 -5.2322 -1.4329 33 1 0.2031 -4.3686 -0.8659 34 1 0.9988 -6.8236 0.1347 35 1 0.0620 -5.6333 1.0893 36 1 2.6204 -5.8584 3.6076 37 1 1.1757 -6.7426 3.0299 38 1 -0.6587 -6.6570 4.3668 39 1 0.5361 -6.1360 5.5789 40 1 -2.9552 -7.1122 5.5365 41 1 -4.3784 -5.9740 7.4264 42 1 0.4529 -3.2009 1.8126 43 1 1.6972 -2.7194 2.9966 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026224486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:35 Heat of formation + Delta-G solvation = 63.208577 kcal Electronic energy + Delta-G solvation = -25263.276693 eV Core-core repulsion = 21731.502362 eV Total energy + Delta-G solvation = -3531.774331 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.20326 -40.17870 -38.14701 -34.93774 -33.17213 -32.91621 -30.82248 -29.96304 -29.70204 -28.33609 -27.91193 -25.28719 -23.51310 -22.90382 -21.61811 -20.24068 -19.74013 -18.66915 -18.59503 -18.14291 -17.35336 -16.76145 -15.76835 -15.12007 -15.04902 -14.74767 -14.33642 -13.98717 -13.67456 -13.59345 -13.39229 -13.08776 -12.97776 -12.89436 -12.43699 -12.32814 -12.01261 -11.82976 -11.35640 -11.00180 -10.73047 -10.65436 -10.61558 -10.53520 -10.29956 -10.22823 -10.10087 -9.85198 -9.57448 -9.56778 -9.27809 -8.83480 -8.75528 -8.12539 -6.90948 -5.71649 -3.01181 1.89889 2.67575 2.86232 3.04325 3.45829 3.47416 3.52619 3.54864 4.53439 4.61703 4.66477 4.67390 4.86276 4.96038 5.10913 5.20453 5.36691 5.46482 5.55660 5.60073 5.62302 5.65957 5.68250 5.71636 5.85916 5.91206 5.96050 6.03277 6.15387 6.18365 6.36299 6.40297 6.54288 6.62779 6.66458 6.79461 6.91006 6.95012 7.07730 7.24252 7.68921 7.75392 7.96177 8.46112 8.60687 9.57275 10.13896 10.47289 11.50459 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.014402 B = 0.004087 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.710335 B = 6849.601881 C = 8185.177068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.009 4.009 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.718 5.718 10 C 0.181 3.819 11 H 0.052 0.948 12 C -0.129 4.129 13 C -0.112 4.112 14 C -0.107 4.107 15 H 0.099 0.901 16 C 0.104 3.896 17 N -0.619 5.619 18 C 0.523 3.477 19 O -0.520 6.520 20 C -0.055 4.055 21 C 0.088 3.912 22 C -0.267 4.267 23 C 0.052 3.948 24 N -0.479 5.479 25 H 0.438 0.562 26 N -0.260 5.260 27 C 0.131 3.869 28 C -0.117 4.117 29 H 0.081 0.919 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.147 0.853 41 H 0.175 0.825 42 H 0.089 0.911 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.535 -19.325 10.364 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.735 3.265 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.359 5.359 10 C 0.070 3.930 11 H 0.070 0.930 12 C -0.167 4.167 13 C -0.150 4.150 14 C -0.126 4.126 15 H 0.117 0.883 16 C -0.020 4.020 17 N -0.354 5.354 18 C 0.310 3.690 19 O -0.395 6.395 20 C -0.097 4.097 21 C -0.080 4.080 22 C -0.296 4.296 23 C -0.096 4.096 24 N -0.187 5.187 25 H 0.281 0.719 26 N -0.083 5.083 27 C 0.009 3.991 28 C -0.140 4.140 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.165 0.835 41 H 0.192 0.808 42 H 0.107 0.893 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.234 -17.594 10.973 20.772 hybrid contribution -0.490 0.577 0.116 0.766 sum -1.723 -17.017 11.089 20.384 Atomic orbital electron populations 1.69652 1.05100 1.25707 1.57134 1.24731 0.95421 0.97650 1.02730 0.86241 0.78721 0.84142 0.77374 1.21802 1.21844 1.20774 1.19204 0.90939 0.84109 1.43240 0.91199 1.42637 1.05645 0.99770 1.87845 1.20695 0.94476 0.86374 0.91496 0.93004 1.22384 1.00917 0.96085 0.97313 1.22210 0.97668 0.98428 0.96687 1.23238 0.98403 0.97670 0.93299 0.88312 1.22292 0.94303 0.88867 0.96501 1.48621 1.35314 1.14499 1.36955 1.19882 0.79515 0.89661 0.79986 1.90788 1.48886 1.32888 1.66901 1.20018 0.96626 0.97673 0.95393 1.21591 0.96067 0.93930 0.96454 1.21374 0.96137 1.06597 1.05518 1.22525 0.98674 0.90646 0.97718 1.46394 1.14426 1.25474 1.32375 0.71888 1.77440 1.01009 1.20535 1.09323 1.21896 0.99005 0.87299 0.90876 1.23577 0.98051 0.92775 0.99566 0.90113 0.93474 0.78025 0.92181 0.91374 0.92321 0.91568 0.91893 0.91156 0.87274 0.87676 0.83533 0.80834 0.89268 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.62 13.06 55.49 0.72 -27.89 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.90 22.84 29.55 -169.99 -5.02 17.82 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.69 9.95 -15.06 -0.15 -6.84 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.56 3.57 -52.60 -0.19 -17.75 16 10 C 0.18 3.42 3.25 -67.08 -0.22 3.20 16 11 H 0.05 0.99 8.10 -51.93 -0.42 0.57 16 12 C -0.13 -2.03 6.55 -25.78 -0.17 -2.20 16 13 C -0.11 -1.47 5.86 -25.39 -0.15 -1.62 16 14 C -0.11 -1.32 4.28 -87.11 -0.37 -1.69 16 15 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 16 C 0.10 1.20 5.96 -2.57 -0.02 1.19 16 17 N -0.62 -10.04 2.83 -170.73 -0.48 -10.52 16 18 C 0.52 9.16 7.84 -10.99 -0.09 9.07 16 19 O -0.52 -11.95 15.91 5.56 0.09 -11.86 16 20 C -0.06 -0.69 5.27 -29.04 -0.15 -0.84 16 21 C 0.09 1.25 6.00 -82.41 -0.49 0.75 16 22 C -0.27 -3.02 10.72 -40.01 -0.43 -3.45 16 23 C 0.05 0.50 11.99 -17.22 -0.21 0.29 16 24 N -0.48 -5.54 7.36 30.45 0.22 -5.32 16 25 H 0.44 3.59 8.96 -182.60 -1.64 1.96 16 26 N -0.26 -4.16 12.07 33.67 0.41 -3.75 16 27 C 0.13 2.59 5.40 -3.18 -0.02 2.57 16 28 C -0.12 -1.97 3.97 -87.84 -0.35 -2.32 16 29 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 31 H 0.38 10.26 6.80 -40.82 -0.28 9.98 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.20 7.59 -51.93 -0.39 0.81 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.97 7.30 -51.93 -0.38 0.59 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.63 7.42 -51.93 -0.39 0.24 16 38 H 0.11 1.00 7.83 -51.93 -0.41 0.60 16 39 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 41 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.09 2.10 6.12 -51.93 -0.32 1.78 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 347.58 15.07 5.24 5.24 Total: -1.00 -36.76 347.58 -9.49 -46.25 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -7.57 Total: 10.02 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.90 Total: -2.24 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: 0.68 Total: -65.23 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.76 -9.49 -46.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026224486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.460 kcal (2) G-P(sol) polarization free energy of solvation -36.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds