Wall clock time and date at job start Fri Apr 10 2020 17:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99830 * 2 1 4 4 H 1.48505 * 109.47044 * 269.99996 * 3 2 1 5 5 H 1.48495 * 109.47463 * 30.00139 * 3 2 1 6 6 H 1.48495 * 109.47376 * 150.00350 * 3 2 1 7 7 C 1.38810 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99813 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00101 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99900 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.05347 * 324.59694 * 10 9 7 12 12 C 1.53729 * 109.91130 * 203.41325 * 10 9 7 13 13 C 1.54099 * 106.66920 * 241.52265 * 12 10 9 14 14 C 1.54453 * 104.73460 * 336.58886 * 13 12 10 15 15 H 1.08993 * 114.49586 * 271.97558 * 14 13 12 16 16 C 1.54901 * 108.83420 * 143.49628 * 14 13 12 17 17 N 1.47355 * 105.01057 * 288.83130 * 16 14 13 18 18 C 1.34775 * 125.69994 * 155.09150 * 17 16 14 19 19 O 1.21277 * 119.99944 * 179.97438 * 18 17 16 20 20 C 1.50693 * 120.00128 * 359.68818 * 18 17 16 21 21 C 1.50701 * 109.47229 * 179.97438 * 20 18 17 22 22 C 1.39868 * 125.89496 * 125.00551 * 21 20 18 23 23 C 1.35321 * 107.91886 * 180.02562 * 22 21 20 24 24 N 1.34946 * 107.74582 * 359.97438 * 23 22 21 25 25 H 0.97001 * 126.03836 * 180.02562 * 24 23 22 26 26 N 1.30831 * 125.89992 * 304.69255 * 21 20 18 27 27 C 1.47033 * 108.59604 * 334.82630 * 17 16 14 28 28 C 1.53899 * 109.91764 * 85.79881 * 10 9 7 29 29 H 1.09005 * 113.49647 * 264.65150 * 28 10 9 30 30 H 0.97000 * 120.00489 * 359.97438 * 1 2 3 31 31 H 0.96994 * 120.00261 * 359.97438 * 9 7 2 32 32 H 1.09004 * 110.01860 * 122.21833 * 12 10 9 33 33 H 1.08996 * 110.05502 * 0.84802 * 12 10 9 34 34 H 1.09003 * 110.38272 * 217.77940 * 13 12 10 35 35 H 1.09001 * 110.38910 * 95.41192 * 13 12 10 36 36 H 1.08997 * 110.44493 * 169.91786 * 16 14 13 37 37 H 1.08994 * 110.28768 * 47.66571 * 16 14 13 38 38 H 1.09001 * 109.47533 * 300.00407 * 20 18 17 39 39 H 1.08999 * 109.47111 * 60.00311 * 20 18 17 40 40 H 1.07997 * 126.04420 * 0.02562 * 22 21 20 41 41 H 1.08002 * 126.12725 * 179.97438 * 23 22 21 42 42 H 1.09001 * 109.82591 * 122.04862 * 27 17 16 43 43 H 1.08999 * 109.82968 * 242.92292 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9682 -3.5634 -0.5909 12 6 1.1716 -4.7736 -0.5729 13 6 0.9906 -5.8152 0.5484 14 6 2.2054 -5.6056 1.4790 15 1 3.0906 -6.1782 1.2025 16 6 1.7555 -5.8236 2.9452 17 7 0.9140 -4.6566 3.2636 18 6 -0.0538 -4.6172 4.2008 19 8 -0.6855 -3.5971 4.3775 20 6 -0.3553 -5.8424 5.0246 21 6 -1.4694 -5.5357 5.9919 22 6 -2.6670 -6.2475 6.1159 23 6 -3.4009 -5.6613 7.0901 24 7 -2.6924 -4.6160 7.5660 25 1 -2.9711 -4.0119 8.2719 26 7 -1.4810 -4.5612 6.8647 27 6 1.3110 -3.5405 2.3926 28 6 2.4109 -4.0571 1.4452 29 1 3.4121 -3.7510 1.7487 30 1 -0.4851 0.8400 0.0004 31 1 0.3556 -2.3881 0.0005 32 1 1.6597 -5.2322 -1.4329 33 1 0.2031 -4.3686 -0.8659 34 1 0.9988 -6.8236 0.1347 35 1 0.0620 -5.6333 1.0893 36 1 2.6204 -5.8584 3.6076 37 1 1.1757 -6.7426 3.0299 38 1 -0.6587 -6.6570 4.3668 39 1 0.5361 -6.1360 5.5789 40 1 -2.9552 -7.1122 5.5365 41 1 -4.3784 -5.9740 7.4264 42 1 0.4529 -3.2009 1.8126 43 1 1.6972 -2.7194 2.9966 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026224486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:35 Heat of formation + Delta-G solvation = 36.086047 kcal Electronic energy + Delta-G solvation = -25264.452814 eV Core-core repulsion = 21731.502362 eV Total energy + Delta-G solvation = -3532.950453 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.11262 -41.45085 -39.53975 -36.55903 -34.88412 -33.90850 -32.63262 -30.96101 -30.80371 -29.76624 -29.08442 -26.83475 -25.20796 -24.37911 -22.48665 -21.26250 -20.96485 -20.14081 -19.71547 -19.32636 -18.97929 -18.04155 -17.16870 -16.67827 -16.37062 -16.24275 -15.53114 -15.38480 -14.99984 -14.80702 -14.49291 -14.37901 -14.35818 -14.14987 -13.60882 -13.46995 -13.32328 -13.13283 -12.95514 -12.87051 -12.43413 -12.33657 -12.08624 -11.78925 -11.55427 -11.54585 -11.50242 -11.37844 -11.34549 -10.91684 -10.81233 -10.34056 -9.59610 -9.51619 -8.96089 -7.94248 -5.21431 1.04942 1.42157 1.44896 1.52369 1.72157 1.75918 2.08800 2.28629 2.54917 3.38418 3.48229 3.57437 3.72433 3.85434 3.92038 4.08319 4.28969 4.34539 4.40851 4.45571 4.48740 4.51998 4.52800 4.73646 4.78369 4.81153 4.83608 4.88261 4.89596 5.10050 5.13390 5.17706 5.23197 5.32400 5.38682 5.49322 5.51980 5.60445 5.64990 5.72847 6.27843 6.53554 6.69698 6.80499 7.29246 7.33143 8.12370 8.32135 9.29494 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.014402 B = 0.004087 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.710335 B = 6849.601881 C = 8185.177068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.966 3.034 4 H -0.283 1.283 5 H -0.304 1.304 6 H -0.269 1.269 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.731 5.731 10 C 0.168 3.832 11 H 0.054 0.946 12 C -0.125 4.125 13 C -0.105 4.105 14 C -0.085 4.085 15 H 0.143 0.857 16 C 0.099 3.901 17 N -0.616 5.616 18 C 0.513 3.487 19 O -0.591 6.591 20 C -0.042 4.042 21 C 0.066 3.934 22 C -0.284 4.284 23 C 0.065 3.935 24 N -0.481 5.481 25 H 0.447 0.553 26 N -0.326 5.326 27 C 0.141 3.859 28 C -0.115 4.115 29 H 0.084 0.916 30 H 0.247 0.753 31 H 0.368 0.632 32 H 0.086 0.914 33 H 0.038 0.962 34 H 0.101 0.899 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.150 0.850 39 H 0.132 0.868 40 H 0.175 0.825 41 H 0.221 0.779 42 H 0.042 0.958 43 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.219 -23.734 10.708 26.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.271 4.271 3 Si 0.796 3.204 4 H -0.210 1.210 5 H -0.231 1.231 6 H -0.193 1.193 7 C -0.364 4.364 8 H 0.096 0.904 9 N -0.370 5.370 10 C 0.060 3.940 11 H 0.072 0.928 12 C -0.163 4.163 13 C -0.143 4.143 14 C -0.103 4.103 15 H 0.161 0.839 16 C -0.022 4.022 17 N -0.350 5.350 18 C 0.302 3.698 19 O -0.471 6.471 20 C -0.083 4.083 21 C -0.101 4.101 22 C -0.313 4.313 23 C -0.082 4.082 24 N -0.190 5.190 25 H 0.292 0.708 26 N -0.151 5.151 27 C 0.018 3.982 28 C -0.137 4.137 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.200 0.800 32 H 0.104 0.896 33 H 0.057 0.943 34 H 0.119 0.881 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.132 0.868 38 H 0.168 0.832 39 H 0.150 0.850 40 H 0.192 0.808 41 H 0.238 0.762 42 H 0.060 0.940 43 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 0.169 -22.093 11.313 24.822 hybrid contribution -0.915 1.896 0.026 2.105 sum -0.745 -20.198 11.339 23.175 Atomic orbital electron populations 1.69834 1.06777 1.25657 1.60090 1.25525 0.96179 1.01095 1.04320 0.85231 0.77711 0.79969 0.77478 1.21021 1.23122 1.19337 1.19632 0.91412 0.85296 1.40020 0.90365 1.42850 1.05062 1.01192 1.87914 1.21078 0.94623 0.85192 0.93145 0.92837 1.22329 0.98864 0.95787 0.99310 1.22192 0.97103 0.99444 0.95512 1.23337 0.99569 0.93614 0.93814 0.83905 1.22698 0.95064 0.88286 0.96185 1.48707 1.35469 1.14918 1.35869 1.20972 0.78483 0.90506 0.79819 1.90752 1.51456 1.35928 1.68982 1.20126 0.97587 0.95538 0.95083 1.22068 0.97612 0.94066 0.96398 1.21809 0.95297 1.07652 1.06544 1.23324 0.99700 0.88882 0.96327 1.46464 1.13773 1.26296 1.32454 0.70755 1.77338 1.03729 1.22576 1.11418 1.21458 0.97989 0.87964 0.90795 1.23427 0.96669 0.96984 0.96621 0.89807 0.94461 0.79964 0.89574 0.94281 0.88097 0.93640 0.89439 0.86776 0.83195 0.85013 0.80797 0.76215 0.93995 0.97186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.59 13.06 21.65 0.28 -63.31 16 2 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 3 Si 0.97 48.76 29.55 68.60 2.03 50.79 16 4 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 5 H -0.30 -15.80 7.11 99.48 0.71 -15.09 16 6 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.23 -13.17 9.95 84.03 0.84 -12.33 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.73 -37.50 3.57 -320.34 -1.14 -38.64 16 10 C 0.17 6.35 3.25 45.54 0.15 6.49 16 11 H 0.05 1.99 8.10 -2.39 -0.02 1.97 16 12 C -0.12 -3.77 6.55 31.21 0.20 -3.56 16 13 C -0.10 -2.36 5.86 31.46 0.18 -2.17 16 14 C -0.08 -1.70 4.28 -8.52 -0.04 -1.74 16 15 H 0.14 1.82 8.14 -2.39 -0.02 1.81 16 16 C 0.10 1.84 5.96 86.87 0.52 2.36 16 17 N -0.62 -19.66 2.83 -812.45 -2.30 -21.96 16 18 C 0.51 18.14 7.84 87.66 0.69 18.82 16 19 O -0.59 -29.06 15.91 -3.02 -0.05 -29.11 16 20 C -0.04 -0.96 5.27 29.10 0.15 -0.80 16 21 C 0.07 1.81 6.00 43.10 0.26 2.06 16 22 C -0.28 -5.78 10.72 21.99 0.24 -5.54 16 23 C 0.06 1.11 11.99 83.54 1.00 2.11 16 24 N -0.48 -10.96 7.36 -57.59 -0.42 -11.38 16 25 H 0.45 7.36 8.96 -213.33 -1.91 5.45 16 26 N -0.33 -10.64 12.07 -47.39 -0.57 -11.21 16 27 C 0.14 5.88 5.40 86.65 0.47 6.35 16 28 C -0.12 -3.76 3.97 -9.00 -0.04 -3.79 16 29 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 30 H 0.25 15.81 8.31 -92.71 -0.77 15.04 16 31 H 0.37 21.13 6.80 -92.71 -0.63 20.50 16 32 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.04 1.41 7.59 -2.39 -0.02 1.39 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.04 1.23 7.30 -2.39 -0.02 1.21 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.11 1.25 7.42 -2.39 -0.02 1.24 16 38 H 0.15 2.07 7.83 -2.39 -0.02 2.05 16 39 H 0.13 2.23 8.14 -2.39 -0.02 2.22 16 40 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 41 H 0.22 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.04 2.15 6.12 -2.39 -0.01 2.13 16 43 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -91.57 347.58 1.41 -90.16 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: -1.50 Total: 30.73 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 5.09 Total: 3.93 kcal Atomic # 7 Polarization: -142.35 SS G_CDS: -4.16 Total: -146.50 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.05 Total: -29.11 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.03 Total: 50.79 kcal Total: -91.57 1.41 -90.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026224486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.242 kcal (2) G-P(sol) polarization free energy of solvation -91.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds