Wall clock time and date at job start Fri Apr 10 2020 17:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48499 * 109.47139 * 270.00093 * 3 2 1 5 5 H 1.48496 * 109.47437 * 30.00241 * 3 2 1 6 6 H 1.48505 * 109.47086 * 150.00410 * 3 2 1 7 7 C 1.38809 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00214 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99860 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00072 * 179.97438 * 9 7 2 11 11 H 1.09007 * 110.54603 * 36.17486 * 10 9 7 12 12 C 1.55941 * 110.49402 * 273.54429 * 10 9 7 13 13 C 1.56399 * 105.85497 * 233.82857 * 12 10 9 14 14 C 1.50998 * 101.59648 * 334.94450 * 13 12 10 15 15 H 1.09006 * 110.04535 * 291.22905 * 14 13 12 16 16 C 1.50346 * 125.57307 * 156.02658 * 14 13 12 17 17 N 1.49219 * 104.85995 * 215.67175 * 16 14 13 18 18 C 1.34768 * 126.05509 * 187.06474 * 17 16 14 19 19 O 1.21289 * 119.99777 * 180.02562 * 18 17 16 20 20 C 1.50703 * 120.00601 * 0.02562 * 18 17 16 21 21 C 1.50697 * 109.47372 * 180.02562 * 20 18 17 22 22 C 1.39866 * 125.89893 * 125.00218 * 21 20 18 23 23 C 1.35316 * 107.92339 * 180.02562 * 22 21 20 24 24 N 1.34951 * 107.74128 * 359.97438 * 23 22 21 25 25 H 0.97005 * 126.03314 * 180.02562 * 24 23 22 26 26 N 1.30843 * 125.89834 * 304.69297 * 21 20 18 27 27 C 1.49700 * 107.88258 * 7.06059 * 17 16 14 28 28 C 1.50459 * 110.55760 * 158.86052 * 10 9 7 29 29 H 1.09006 * 109.45818 * 38.30034 * 28 10 9 30 30 H 0.97003 * 119.99895 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99817 * 359.97438 * 9 7 2 32 32 H 1.09002 * 110.18781 * 114.70971 * 12 10 9 33 33 H 1.09003 * 110.18347 * 352.94645 * 12 10 9 34 34 H 1.09003 * 111.00179 * 93.01647 * 13 12 10 35 35 H 1.08998 * 111.00428 * 216.86294 * 13 12 10 36 36 H 1.09004 * 110.35729 * 334.51179 * 16 14 13 37 37 H 1.08994 * 110.36004 * 96.71315 * 16 14 13 38 38 H 1.08999 * 109.46891 * 300.00204 * 20 18 17 39 39 H 1.09002 * 109.46642 * 59.99999 * 20 18 17 40 40 H 1.08007 * 126.03780 * 359.97414 * 22 21 20 41 41 H 1.07995 * 126.13007 * 179.97438 * 23 22 21 42 42 H 1.08998 * 110.84301 * 143.33060 * 27 17 16 43 43 H 1.08995 * 110.84478 * 266.74286 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 1 3.5896 -3.2143 -0.6032 12 6 4.3075 -2.9885 1.4569 13 6 5.8432 -3.2349 1.6206 14 6 6.2672 -3.4697 0.1905 15 1 5.8604 -4.4148 -0.1694 16 6 7.6524 -3.2631 -0.3563 17 7 7.4443 -2.7528 -1.7430 18 6 8.4048 -2.5517 -2.6666 19 8 8.1108 -2.1306 -3.7654 20 6 9.8442 -2.8501 -2.3344 21 6 10.7098 -2.5417 -3.5288 22 6 11.8173 -1.6876 -3.5404 23 6 12.3217 -1.6767 -4.7960 24 7 11.5606 -2.4955 -5.5520 25 1 11.6876 -2.6831 -6.4952 26 7 10.5585 -3.0312 -4.7328 27 6 5.9795 -2.5040 -1.9262 28 6 5.5140 -2.2715 -0.5097 29 1 5.9027 -1.3222 -0.1407 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3621 -0.0014 32 1 3.7595 -3.9195 1.6021 33 1 3.9688 -2.2378 2.1710 34 1 6.3378 -2.3566 2.0355 35 1 6.0344 -4.1153 2.2343 36 1 8.1903 -2.5275 0.2418 37 1 8.1971 -4.2069 -0.3754 38 1 10.1573 -2.2351 -1.4907 39 1 9.9460 -3.9036 -2.0737 40 1 12.2015 -1.1338 -2.6964 41 1 13.1796 -1.1137 -5.1327 42 1 5.8102 -1.6195 -2.5402 43 1 5.4895 -3.3753 -2.3607 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026224487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:38 Heat of formation + Delta-G solvation = 75.006762 kcal Electronic energy + Delta-G solvation = -24581.556392 eV Core-core repulsion = 21050.293668 eV Total energy + Delta-G solvation = -3531.262724 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.39064 -40.50009 -38.57415 -35.40196 -33.44562 -33.14488 -31.17232 -30.19812 -30.13028 -28.82421 -28.07385 -25.61320 -23.39584 -22.54402 -21.77314 -20.44795 -20.27961 -19.25048 -18.86905 -18.32691 -17.61104 -16.74971 -16.39478 -15.59047 -14.90755 -14.70429 -14.65927 -14.30107 -14.05695 -13.75876 -13.67789 -13.53940 -12.95536 -12.91598 -12.65549 -12.49870 -12.16703 -11.94142 -11.88253 -11.54582 -11.12896 -10.83485 -10.81902 -10.80498 -10.47897 -10.37649 -10.03720 -9.92106 -9.74388 -9.57292 -9.50859 -8.93965 -8.92210 -8.62311 -7.27334 -5.76941 -3.12797 1.71603 2.45128 2.67775 2.71307 2.99637 3.38224 3.41902 3.46748 4.04851 4.34189 4.48260 4.59575 4.69403 4.76406 4.93100 5.05203 5.14962 5.19232 5.28296 5.36474 5.42027 5.49647 5.51415 5.52411 5.63633 5.72262 5.73213 5.80517 5.93233 5.99135 6.06797 6.14736 6.19681 6.27181 6.36312 6.39506 6.55043 6.71752 6.95661 7.06540 7.49514 7.54149 7.99379 8.22477 8.42406 9.20301 9.92987 10.12125 11.41343 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.003141 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.226450 B = 8910.971607 C = 9746.926890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.745 5.745 10 C 0.201 3.799 11 H 0.063 0.937 12 C -0.143 4.143 13 C -0.097 4.097 14 C -0.127 4.127 15 H 0.084 0.916 16 C 0.120 3.880 17 N -0.628 5.628 18 C 0.530 3.470 19 O -0.526 6.526 20 C -0.055 4.055 21 C 0.086 3.914 22 C -0.266 4.266 23 C 0.053 3.947 24 N -0.478 5.478 25 H 0.438 0.562 26 N -0.262 5.262 27 C 0.130 3.870 28 C -0.123 4.123 29 H 0.079 0.921 30 H 0.259 0.741 31 H 0.361 0.639 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.148 0.852 41 H 0.175 0.825 42 H 0.080 0.920 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.803 -7.586 -2.213 27.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.109 0.891 9 N -0.387 5.387 10 C 0.090 3.910 11 H 0.081 0.919 12 C -0.183 4.183 13 C -0.136 4.136 14 C -0.147 4.147 15 H 0.102 0.898 16 C -0.002 4.002 17 N -0.364 5.364 18 C 0.317 3.683 19 O -0.402 6.402 20 C -0.097 4.097 21 C -0.082 4.082 22 C -0.296 4.296 23 C -0.094 4.094 24 N -0.186 5.186 25 H 0.282 0.718 26 N -0.085 5.085 27 C 0.009 3.991 28 C -0.143 4.143 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.194 0.806 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.165 0.835 41 H 0.193 0.807 42 H 0.099 0.901 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 25.772 -8.144 -3.641 27.272 hybrid contribution 1.163 1.788 0.102 2.136 sum 26.935 -6.356 -3.539 27.900 Atomic orbital electron populations 1.69700 1.05113 1.25825 1.57469 1.24669 0.95210 0.97184 1.01982 0.86578 0.79161 0.85084 0.77856 1.21052 1.21774 1.20361 1.19071 0.80549 0.94702 1.43035 0.89132 1.42855 1.04074 1.01795 1.89948 1.20097 0.88295 0.89474 0.93099 0.91934 1.23752 0.93107 1.01287 1.00188 1.21752 0.97326 1.00941 0.93546 1.22176 0.94482 1.00031 0.98004 0.89778 1.21280 0.97506 0.98915 0.82466 1.49854 1.07609 1.65699 1.13287 1.19972 0.86347 0.78131 0.83843 1.90761 1.82781 1.44919 1.21713 1.20007 0.90360 1.04440 0.94862 1.21574 0.95892 0.97422 0.93311 1.21392 1.01224 1.08622 0.98357 1.22548 0.98048 0.96677 0.92144 1.46392 1.23528 1.36780 1.11920 0.71822 1.77418 1.07998 1.21152 1.01915 1.21476 0.78798 1.01882 0.96966 1.22555 0.98469 0.98805 0.94503 0.90262 0.93060 0.80563 0.92238 0.90721 0.91653 0.91925 0.91167 0.90973 0.87035 0.87354 0.83454 0.80741 0.90128 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.25 13.97 55.49 0.78 -28.47 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 22.17 27.73 -169.99 -4.71 17.46 16 4 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 7 C -0.24 -6.74 10.46 -15.06 -0.16 -6.90 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.74 -17.07 4.93 -53.13 -0.26 -17.33 16 10 C 0.20 3.61 3.40 -67.63 -0.23 3.38 16 11 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 12 C -0.14 -2.22 6.73 -23.33 -0.16 -2.37 16 13 C -0.10 -1.12 6.72 -25.91 -0.17 -1.30 16 14 C -0.13 -1.44 2.77 -90.27 -0.25 -1.69 16 15 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 16 C 0.12 1.16 6.41 -3.86 -0.02 1.14 16 17 N -0.63 -8.19 3.43 -171.56 -0.59 -8.78 16 18 C 0.53 7.56 7.87 -10.99 -0.09 7.48 16 19 O -0.53 -9.97 15.90 5.55 0.09 -9.88 16 20 C -0.06 -0.55 5.51 -29.03 -0.16 -0.71 16 21 C 0.09 1.03 6.01 -82.41 -0.50 0.54 16 22 C -0.27 -2.53 10.72 -40.01 -0.43 -2.96 16 23 C 0.05 0.42 11.99 -17.22 -0.21 0.21 16 24 N -0.48 -4.57 7.36 30.45 0.22 -4.34 16 25 H 0.44 2.73 8.96 -182.61 -1.64 1.10 16 26 N -0.26 -3.57 12.06 33.67 0.41 -3.17 16 27 C 0.13 1.96 6.81 -3.31 -0.02 1.94 16 28 C -0.12 -1.83 2.42 -90.26 -0.22 -2.05 16 29 H 0.08 1.24 7.90 -51.93 -0.41 0.83 16 30 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 31 H 0.36 8.26 5.50 -40.82 -0.22 8.04 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.32 7.98 -51.93 -0.41 0.91 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.11 0.80 8.12 -51.93 -0.42 0.38 16 39 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.15 1.04 8.06 -52.48 -0.42 0.61 16 41 H 0.18 0.63 8.06 -52.49 -0.42 0.20 16 42 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 351.72 15.07 5.30 5.30 Total: -1.00 -36.83 351.72 -9.25 -46.08 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -7.77 Total: 6.37 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.71 Total: -3.24 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: 0.56 Total: -62.09 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.83 -9.25 -46.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026224487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.083 kcal (2) G-P(sol) polarization free energy of solvation -36.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds