Wall clock time and date at job start Fri Apr 10 2020 17:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48499 * 109.47139 * 270.00093 * 3 2 1 5 5 H 1.48496 * 109.47437 * 30.00241 * 3 2 1 6 6 H 1.48505 * 109.47086 * 150.00410 * 3 2 1 7 7 C 1.38809 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00214 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99860 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00072 * 179.97438 * 9 7 2 11 11 H 1.09007 * 110.54603 * 36.17486 * 10 9 7 12 12 C 1.55941 * 110.49402 * 273.54429 * 10 9 7 13 13 C 1.56399 * 105.85497 * 233.82857 * 12 10 9 14 14 C 1.50998 * 101.59648 * 334.94450 * 13 12 10 15 15 H 1.09006 * 110.04535 * 291.22905 * 14 13 12 16 16 C 1.50346 * 125.57307 * 156.02658 * 14 13 12 17 17 N 1.49219 * 104.85995 * 215.67175 * 16 14 13 18 18 C 1.34768 * 126.05509 * 187.06474 * 17 16 14 19 19 O 1.21289 * 119.99777 * 180.02562 * 18 17 16 20 20 C 1.50703 * 120.00601 * 0.02562 * 18 17 16 21 21 C 1.50697 * 109.47372 * 180.02562 * 20 18 17 22 22 C 1.39866 * 125.89893 * 125.00218 * 21 20 18 23 23 C 1.35316 * 107.92339 * 180.02562 * 22 21 20 24 24 N 1.34951 * 107.74128 * 359.97438 * 23 22 21 25 25 H 0.97005 * 126.03314 * 180.02562 * 24 23 22 26 26 N 1.30843 * 125.89834 * 304.69297 * 21 20 18 27 27 C 1.49700 * 107.88258 * 7.06059 * 17 16 14 28 28 C 1.50459 * 110.55760 * 158.86052 * 10 9 7 29 29 H 1.09006 * 109.45818 * 38.30034 * 28 10 9 30 30 H 0.97003 * 119.99895 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99817 * 359.97438 * 9 7 2 32 32 H 1.09002 * 110.18781 * 114.70971 * 12 10 9 33 33 H 1.09003 * 110.18347 * 352.94645 * 12 10 9 34 34 H 1.09003 * 111.00179 * 93.01647 * 13 12 10 35 35 H 1.08998 * 111.00428 * 216.86294 * 13 12 10 36 36 H 1.09004 * 110.35729 * 334.51179 * 16 14 13 37 37 H 1.08994 * 110.36004 * 96.71315 * 16 14 13 38 38 H 1.08999 * 109.46891 * 300.00204 * 20 18 17 39 39 H 1.09002 * 109.46642 * 59.99999 * 20 18 17 40 40 H 1.08007 * 126.03780 * 359.97414 * 22 21 20 41 41 H 1.07995 * 126.13007 * 179.97438 * 23 22 21 42 42 H 1.08998 * 110.84301 * 143.33060 * 27 17 16 43 43 H 1.08995 * 110.84478 * 266.74286 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 1 3.5896 -3.2143 -0.6032 12 6 4.3075 -2.9885 1.4569 13 6 5.8432 -3.2349 1.6206 14 6 6.2672 -3.4697 0.1905 15 1 5.8604 -4.4148 -0.1694 16 6 7.6524 -3.2631 -0.3563 17 7 7.4443 -2.7528 -1.7430 18 6 8.4048 -2.5517 -2.6666 19 8 8.1108 -2.1306 -3.7654 20 6 9.8442 -2.8501 -2.3344 21 6 10.7098 -2.5417 -3.5288 22 6 11.8173 -1.6876 -3.5404 23 6 12.3217 -1.6767 -4.7960 24 7 11.5606 -2.4955 -5.5520 25 1 11.6876 -2.6831 -6.4952 26 7 10.5585 -3.0312 -4.7328 27 6 5.9795 -2.5040 -1.9262 28 6 5.5140 -2.2715 -0.5097 29 1 5.9027 -1.3222 -0.1407 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3621 -0.0014 32 1 3.7595 -3.9195 1.6021 33 1 3.9688 -2.2378 2.1710 34 1 6.3378 -2.3566 2.0355 35 1 6.0344 -4.1153 2.2343 36 1 8.1903 -2.5275 0.2418 37 1 8.1971 -4.2069 -0.3754 38 1 10.1573 -2.2351 -1.4907 39 1 9.9460 -3.9036 -2.0737 40 1 12.2015 -1.1338 -2.6964 41 1 13.1796 -1.1137 -5.1327 42 1 5.8102 -1.6195 -2.5402 43 1 5.4895 -3.3753 -2.3607 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026224487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:37 Heat of formation + Delta-G solvation = 47.726003 kcal Electronic energy + Delta-G solvation = -24582.739374 eV Core-core repulsion = 21050.293668 eV Total energy + Delta-G solvation = -3532.445706 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.11648 -41.56880 -39.72018 -36.86023 -35.07944 -33.93699 -33.06853 -31.26231 -30.81196 -30.07862 -28.96620 -27.04210 -24.64591 -24.24368 -22.47527 -21.52456 -21.21533 -20.53816 -19.83528 -19.51994 -18.97989 -17.78868 -17.58027 -16.70280 -16.41432 -15.96106 -15.85030 -15.36850 -15.11274 -14.98289 -14.55467 -14.44643 -14.35892 -14.29112 -13.72142 -13.54623 -13.44292 -13.20198 -13.04937 -12.91282 -12.64589 -12.30098 -12.22803 -12.09089 -11.83174 -11.57156 -11.53998 -11.38602 -11.04035 -10.99433 -10.82168 -10.33913 -9.67733 -9.59407 -9.29095 -8.02546 -5.34893 1.03916 1.35422 1.39384 1.45665 1.66389 1.69059 2.04645 2.14239 2.47414 2.98303 3.29678 3.54924 3.58408 3.76656 3.91926 4.00246 4.10214 4.18840 4.31309 4.37485 4.45531 4.50815 4.56482 4.59496 4.72032 4.73063 4.78329 4.81705 4.89168 4.94856 4.98428 5.08709 5.15615 5.22699 5.27126 5.37600 5.55960 5.56260 5.72102 5.79621 6.22766 6.52844 6.54669 6.79788 7.08226 7.19265 7.85664 8.03135 9.19233 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.003141 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.226450 B = 8910.971607 C = 9746.926890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.065 4.065 3 Si 0.951 3.049 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.250 1.250 7 C -0.224 4.224 8 H 0.058 0.942 9 N -0.750 5.750 10 C 0.188 3.812 11 H 0.045 0.955 12 C -0.140 4.140 13 C -0.081 4.081 14 C -0.106 4.106 15 H 0.086 0.914 16 C 0.121 3.879 17 N -0.625 5.625 18 C 0.523 3.477 19 O -0.585 6.585 20 C -0.046 4.046 21 C 0.066 3.934 22 C -0.286 4.286 23 C 0.065 3.935 24 N -0.480 5.480 25 H 0.448 0.552 26 N -0.322 5.322 27 C 0.129 3.871 28 C -0.125 4.125 29 H 0.077 0.923 30 H 0.257 0.743 31 H 0.363 0.637 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.147 0.853 39 H 0.134 0.866 40 H 0.172 0.828 41 H 0.219 0.781 42 H 0.048 0.952 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.326 -7.841 -0.562 32.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.257 4.257 3 Si 0.779 3.221 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.174 1.174 7 C -0.355 4.355 8 H 0.076 0.924 9 N -0.393 5.393 10 C 0.080 3.920 11 H 0.063 0.937 12 C -0.180 4.180 13 C -0.119 4.119 14 C -0.125 4.125 15 H 0.104 0.896 16 C 0.001 3.999 17 N -0.360 5.360 18 C 0.313 3.687 19 O -0.465 6.465 20 C -0.087 4.087 21 C -0.101 4.101 22 C -0.315 4.315 23 C -0.083 4.083 24 N -0.189 5.189 25 H 0.293 0.707 26 N -0.147 5.147 27 C 0.006 3.994 28 C -0.145 4.145 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.197 0.803 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.127 0.873 38 H 0.165 0.835 39 H 0.151 0.849 40 H 0.189 0.811 41 H 0.235 0.765 42 H 0.067 0.933 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 30.366 -8.461 -1.948 31.582 hybrid contribution -0.265 1.755 -0.485 1.840 sum 30.101 -6.705 -2.433 30.934 Atomic orbital electron populations 1.69878 1.07069 1.26515 1.60132 1.25460 0.96056 1.01063 1.03077 0.85464 0.78823 0.80093 0.77726 1.21314 1.22164 1.17435 1.19038 0.82694 0.93321 1.40455 0.92393 1.42889 1.02442 1.03844 1.90091 1.20379 0.89473 0.87081 0.95078 0.93732 1.23578 0.96982 1.00432 0.97000 1.21658 0.93345 1.02876 0.94004 1.22171 0.95027 0.98066 0.97241 0.89551 1.21562 0.96681 1.01448 0.80230 1.49898 1.06168 1.65200 1.14745 1.20815 0.88020 0.76898 0.82995 1.90733 1.83855 1.47654 1.24262 1.20133 0.86627 1.06627 0.95310 1.22050 0.96836 0.97823 0.93379 1.21803 1.00943 1.08820 0.99894 1.23294 0.98151 0.95302 0.91519 1.46465 1.23090 1.36862 1.12494 0.70688 1.77321 1.10373 1.23617 1.03359 1.21288 0.81000 1.00348 0.96719 1.22310 0.96688 1.00647 0.94878 0.90498 0.93456 0.80331 0.91989 0.92993 0.90501 0.88789 0.88513 0.87284 0.83500 0.84872 0.81094 0.76461 0.93322 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.11 13.97 21.65 0.30 -63.81 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 3 Si 0.95 46.60 27.73 68.60 1.90 48.50 16 4 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 5 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.25 -10.95 6.52 99.48 0.65 -10.30 16 7 C -0.22 -12.80 10.46 84.03 0.88 -11.92 16 8 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 9 N -0.75 -34.75 4.93 -322.00 -1.59 -36.33 16 10 C 0.19 6.77 3.40 45.19 0.15 6.93 16 11 H 0.04 1.74 8.12 -2.38 -0.02 1.72 16 12 C -0.14 -4.14 6.73 32.80 0.22 -3.92 16 13 C -0.08 -1.51 6.72 31.13 0.21 -1.31 16 14 C -0.11 -1.99 2.77 -10.56 -0.03 -2.02 16 15 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 16 C 0.12 1.74 6.41 84.99 0.55 2.28 16 17 N -0.63 -14.97 3.43 -815.08 -2.79 -17.77 16 18 C 0.52 14.21 7.87 87.66 0.69 14.90 16 19 O -0.59 -22.64 15.90 -3.06 -0.05 -22.69 16 20 C -0.05 -0.78 5.51 29.10 0.16 -0.62 16 21 C 0.07 1.48 6.01 43.10 0.26 1.73 16 22 C -0.29 -4.64 10.72 21.99 0.24 -4.41 16 23 C 0.06 0.84 11.99 83.54 1.00 1.85 16 24 N -0.48 -8.64 7.36 -57.59 -0.42 -9.06 16 25 H 0.45 5.28 8.96 -213.33 -1.91 3.36 16 26 N -0.32 -8.67 12.06 -47.39 -0.57 -9.24 16 27 C 0.13 3.89 6.81 85.08 0.58 4.47 16 28 C -0.13 -3.56 2.42 -10.56 -0.03 -3.58 16 29 H 0.08 2.26 7.90 -2.38 -0.02 2.24 16 30 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 31 H 0.36 16.41 5.50 -92.71 -0.51 15.90 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.05 1.79 7.98 -2.39 -0.02 1.77 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.15 1.39 8.12 -2.39 -0.02 1.37 16 39 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.22 0.67 8.06 -2.91 -0.02 0.64 16 42 H 0.05 1.75 8.09 -2.39 -0.02 1.74 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -86.92 351.72 0.68 -86.24 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -1.45 Total: 23.20 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 5.35 Total: 0.95 kcal Atomic # 7 Polarization: -131.14 SS G_CDS: -5.07 Total: -136.21 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.05 Total: -22.69 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.90 Total: 48.50 kcal Total: -86.92 0.68 -86.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026224487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.970 kcal (2) G-P(sol) polarization free energy of solvation -86.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds