Wall clock time and date at job start Fri Apr 10 2020 17:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.46936 * 34.29425 * 10 9 7 12 12 C 1.56005 * 110.52375 * 271.65929 * 10 9 7 13 13 C 1.56340 * 105.76715 * 248.32932 * 12 10 9 14 14 C 1.51563 * 101.81374 * 25.43393 * 13 12 10 15 15 H 1.09001 * 111.12106 * 72.20753 * 14 13 12 16 16 C 1.51523 * 123.33745 * 207.98621 * 14 13 12 17 17 N 1.49619 * 102.49561 * 151.63437 * 16 14 13 18 18 C 1.34779 * 126.07056 * 154.35586 * 17 16 14 19 19 O 1.21287 * 119.99600 * 180.02562 * 18 17 16 20 20 C 1.50691 * 120.00221 * 0.02562 * 18 17 16 21 21 C 1.50705 * 109.47310 * 180.02562 * 20 18 17 22 22 C 1.39866 * 125.89998 * 124.99995 * 21 20 18 23 23 C 1.35320 * 107.91836 * 180.02562 * 22 21 20 24 24 N 1.34946 * 107.74765 * 359.97438 * 23 22 21 25 25 H 0.97000 * 126.03879 * 180.02562 * 24 23 22 26 26 N 1.30839 * 125.89254 * 304.69192 * 21 20 18 27 27 C 1.49285 * 107.85745 * 334.35105 * 17 16 14 28 28 C 1.49560 * 104.77530 * 353.53102 * 27 17 16 29 29 H 1.08993 * 107.95113 * 281.73494 * 28 27 17 30 30 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 31 31 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 32 32 H 1.09000 * 110.18900 * 7.40126 * 12 10 9 33 33 H 1.08993 * 110.19291 * 129.17953 * 12 10 9 34 34 H 1.09002 * 110.96087 * 143.56947 * 13 12 10 35 35 H 1.09001 * 110.96278 * 267.26939 * 13 12 10 36 36 H 1.09006 * 110.80335 * 269.88172 * 16 14 13 37 37 H 1.08996 * 110.80202 * 33.18568 * 16 14 13 38 38 H 1.08999 * 109.47323 * 299.99957 * 20 18 17 39 39 H 1.09000 * 109.47192 * 60.00407 * 20 18 17 40 40 H 1.07993 * 126.04185 * 0.02562 * 22 21 20 41 41 H 1.08001 * 126.12723 * 179.97438 * 23 22 21 42 42 H 1.09001 * 110.39852 * 112.40717 * 27 17 16 43 43 H 1.08994 * 110.40078 * 234.81745 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5725 -3.2226 -0.5747 12 6 4.3485 -2.9659 1.4615 13 6 5.8884 -2.8495 1.7056 14 6 6.2768 -1.7617 0.7243 15 1 5.9230 -0.7865 1.0587 16 6 7.6524 -1.6581 0.0974 17 7 7.3630 -0.9897 -1.2096 18 6 8.2253 -0.2421 -1.9266 19 8 7.8722 0.2508 -2.9770 20 6 9.6279 -0.0186 -1.4231 21 6 10.3814 0.8449 -2.4019 22 6 11.0348 2.0448 -2.1030 23 6 11.5881 2.5134 -3.2456 24 7 11.2956 1.6405 -4.2323 25 1 11.5633 1.7188 -5.1614 26 7 10.5419 0.5985 -3.6768 27 6 5.9497 -1.2980 -1.5784 28 6 5.4920 -2.2802 -0.5476 29 1 5.8985 -3.2568 -0.8102 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3620 0.0007 32 1 3.8073 -2.3336 2.1653 33 1 4.0276 -4.0024 1.5639 34 1 6.0987 -2.5435 2.7304 35 1 6.3926 -3.7866 1.4693 36 1 8.3114 -1.0424 0.7095 37 1 8.0827 -2.6475 -0.0573 38 1 9.5911 0.4787 -0.4539 39 1 10.1342 -0.9783 -1.3201 40 1 11.0884 2.5145 -1.1320 41 1 12.1611 3.4229 -3.3493 42 1 5.3411 -0.3946 -1.5393 43 1 5.9050 -1.7446 -2.5717 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026224488.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:40 Heat of formation + Delta-G solvation = 76.524999 kcal Electronic energy + Delta-G solvation = -24950.245991 eV Core-core repulsion = 21419.049103 eV Total energy + Delta-G solvation = -3531.196888 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.35390 -40.50088 -38.54939 -35.29149 -33.35018 -33.11380 -31.11694 -30.16091 -30.09173 -28.80089 -28.06117 -25.66872 -23.37705 -22.73902 -21.74927 -20.42864 -20.07468 -19.00241 -18.78891 -18.30055 -17.81341 -16.69744 -16.25363 -15.54162 -14.91675 -14.73509 -14.46768 -14.25410 -14.03458 -13.81907 -13.71954 -13.64793 -12.93895 -12.74054 -12.55628 -12.45865 -12.25182 -12.00573 -11.69748 -11.39351 -11.09007 -10.87623 -10.77801 -10.76461 -10.44278 -10.31497 -10.11434 -9.85498 -9.69049 -9.55175 -9.46224 -8.92384 -8.89598 -8.54276 -7.26769 -5.76465 -3.12001 1.75058 2.49197 2.71353 2.77277 3.04820 3.38813 3.43212 3.47788 4.10143 4.37885 4.50936 4.60138 4.71470 4.85914 4.96263 5.08996 5.19290 5.22530 5.28977 5.40698 5.47015 5.50292 5.53112 5.55054 5.61489 5.72251 5.77372 5.84973 5.92203 6.08141 6.15891 6.19159 6.29350 6.34499 6.43112 6.43405 6.52976 6.71501 6.95606 7.09980 7.53144 7.59937 8.00223 8.28796 8.43016 9.21061 9.93800 10.13024 11.41890 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.016699 B = 0.003757 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.321076 B = 7450.248737 C = 8524.610443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.007 3.993 3 Si 0.879 3.121 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.091 0.909 9 N -0.743 5.743 10 C 0.202 3.798 11 H 0.064 0.936 12 C -0.144 4.144 13 C -0.099 4.099 14 C -0.127 4.127 15 H 0.089 0.911 16 C 0.115 3.885 17 N -0.627 5.627 18 C 0.529 3.471 19 O -0.526 6.526 20 C -0.055 4.055 21 C 0.086 3.914 22 C -0.266 4.266 23 C 0.053 3.947 24 N -0.478 5.478 25 H 0.438 0.562 26 N -0.262 5.262 27 C 0.132 3.868 28 C -0.123 4.123 29 H 0.074 0.926 30 H 0.259 0.741 31 H 0.361 0.639 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.148 0.852 41 H 0.175 0.825 42 H 0.075 0.925 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.834 -1.090 0.203 25.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.189 4.189 3 Si 0.710 3.290 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.217 1.217 7 C -0.373 4.373 8 H 0.109 0.891 9 N -0.385 5.385 10 C 0.092 3.908 11 H 0.082 0.918 12 C -0.185 4.185 13 C -0.137 4.137 14 C -0.146 4.146 15 H 0.107 0.893 16 C -0.006 4.006 17 N -0.364 5.364 18 C 0.316 3.684 19 O -0.401 6.401 20 C -0.097 4.097 21 C -0.081 4.081 22 C -0.296 4.296 23 C -0.094 4.094 24 N -0.186 5.186 25 H 0.282 0.718 26 N -0.085 5.085 27 C 0.011 3.989 28 C -0.143 4.143 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.194 0.806 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.166 0.834 41 H 0.193 0.807 42 H 0.093 0.907 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 25.203 -1.610 -1.399 25.293 hybrid contribution 0.873 2.000 0.267 2.198 sum 26.075 0.390 -1.132 26.103 Atomic orbital electron populations 1.69696 1.05088 1.25801 1.57528 1.24647 0.95171 0.97076 1.02014 0.86636 0.79403 0.85289 0.77719 1.21109 1.20303 1.21707 1.19080 0.80570 0.94682 1.42952 0.89074 1.42797 1.03968 1.01867 1.89915 1.19995 0.88334 0.89653 0.92854 0.91823 1.23807 0.93631 1.00977 1.00059 1.21839 0.97302 0.96773 0.97798 1.22689 0.94389 1.00887 0.96641 0.89265 1.21800 0.97349 0.97600 0.83897 1.49845 1.13014 1.50987 1.22515 1.19970 0.86170 0.78176 0.84104 1.90760 1.77932 1.48813 1.22588 1.20007 0.91865 1.00407 0.97376 1.21573 0.98426 0.95903 0.92247 1.21394 1.09071 0.99170 0.99939 1.22545 1.01304 0.96791 0.88782 1.46388 1.43270 1.18112 1.10880 0.71843 1.77415 1.12460 1.09216 1.09395 1.20884 0.80639 0.99485 0.97866 1.22108 0.98903 0.98730 0.94596 0.90786 0.93066 0.80551 0.90426 0.92392 0.91924 0.91750 0.90559 0.90872 0.87042 0.87361 0.83449 0.80741 0.90687 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.31 13.97 55.49 0.78 -28.53 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 22.45 27.74 -169.99 -4.71 17.74 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.28 -6.82 6.52 56.52 0.37 -6.45 16 6 H -0.29 -7.60 7.11 56.52 0.40 -7.19 16 7 C -0.24 -6.70 10.45 -15.06 -0.16 -6.85 16 8 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 9 N -0.74 -16.89 4.69 -53.45 -0.25 -17.14 16 10 C 0.20 3.62 3.45 -67.96 -0.23 3.39 16 11 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 12 C -0.14 -2.21 6.74 -23.33 -0.16 -2.36 16 13 C -0.10 -1.15 6.62 -25.66 -0.17 -1.32 16 14 C -0.13 -1.61 3.08 -89.24 -0.28 -1.89 16 15 H 0.09 1.33 7.96 -51.93 -0.41 0.91 16 16 C 0.12 1.21 6.49 -3.05 -0.02 1.19 16 17 N -0.63 -8.90 3.43 -171.66 -0.59 -9.49 16 18 C 0.53 8.11 7.87 -10.99 -0.09 8.03 16 19 O -0.53 -10.56 15.94 5.55 0.09 -10.47 16 20 C -0.05 -0.60 5.33 -29.04 -0.15 -0.75 16 21 C 0.09 1.10 6.01 -82.40 -0.50 0.61 16 22 C -0.27 -2.71 10.72 -40.01 -0.43 -3.14 16 23 C 0.05 0.45 11.99 -17.22 -0.21 0.24 16 24 N -0.48 -4.84 7.36 30.45 0.22 -4.61 16 25 H 0.44 2.95 8.96 -182.60 -1.64 1.31 16 26 N -0.26 -3.73 12.06 33.67 0.41 -3.32 16 27 C 0.13 2.19 6.65 -4.19 -0.03 2.16 16 28 C -0.12 -1.84 2.27 -91.10 -0.21 -2.04 16 29 H 0.07 0.97 7.99 -51.93 -0.42 0.56 16 30 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 31 H 0.36 8.28 4.59 -40.82 -0.19 8.09 16 32 H 0.08 1.38 7.98 -51.93 -0.41 0.96 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.61 7.58 -51.93 -0.39 0.22 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.11 0.89 7.88 -51.93 -0.41 0.48 16 39 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.18 0.73 8.06 -52.49 -0.42 0.30 16 42 H 0.07 1.47 7.17 -51.93 -0.37 1.10 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 348.65 15.07 5.25 5.25 Total: -1.00 -36.98 348.65 -9.16 -46.14 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.64 Total: 7.10 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.72 Total: -2.66 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: 0.57 Total: -63.10 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.71 Total: 17.74 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.98 -9.16 -46.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026224488.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.665 kcal (2) G-P(sol) polarization free energy of solvation -36.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds