Wall clock time and date at job start Fri Apr 10 2020 17:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.46936 * 34.29425 * 10 9 7 12 12 C 1.56005 * 110.52375 * 271.65929 * 10 9 7 13 13 C 1.56340 * 105.76715 * 248.32932 * 12 10 9 14 14 C 1.51563 * 101.81374 * 25.43393 * 13 12 10 15 15 H 1.09001 * 111.12106 * 72.20753 * 14 13 12 16 16 C 1.51523 * 123.33745 * 207.98621 * 14 13 12 17 17 N 1.49619 * 102.49561 * 151.63437 * 16 14 13 18 18 C 1.34779 * 126.07056 * 154.35586 * 17 16 14 19 19 O 1.21287 * 119.99600 * 180.02562 * 18 17 16 20 20 C 1.50691 * 120.00221 * 0.02562 * 18 17 16 21 21 C 1.50705 * 109.47310 * 180.02562 * 20 18 17 22 22 C 1.39866 * 125.89998 * 124.99995 * 21 20 18 23 23 C 1.35320 * 107.91836 * 180.02562 * 22 21 20 24 24 N 1.34946 * 107.74765 * 359.97438 * 23 22 21 25 25 H 0.97000 * 126.03879 * 180.02562 * 24 23 22 26 26 N 1.30839 * 125.89254 * 304.69192 * 21 20 18 27 27 C 1.49285 * 107.85745 * 334.35105 * 17 16 14 28 28 C 1.49560 * 104.77530 * 353.53102 * 27 17 16 29 29 H 1.08993 * 107.95113 * 281.73494 * 28 27 17 30 30 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 31 31 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 32 32 H 1.09000 * 110.18900 * 7.40126 * 12 10 9 33 33 H 1.08993 * 110.19291 * 129.17953 * 12 10 9 34 34 H 1.09002 * 110.96087 * 143.56947 * 13 12 10 35 35 H 1.09001 * 110.96278 * 267.26939 * 13 12 10 36 36 H 1.09006 * 110.80335 * 269.88172 * 16 14 13 37 37 H 1.08996 * 110.80202 * 33.18568 * 16 14 13 38 38 H 1.08999 * 109.47323 * 299.99957 * 20 18 17 39 39 H 1.09000 * 109.47192 * 60.00407 * 20 18 17 40 40 H 1.07993 * 126.04185 * 0.02562 * 22 21 20 41 41 H 1.08001 * 126.12723 * 179.97438 * 23 22 21 42 42 H 1.09001 * 110.39852 * 112.40717 * 27 17 16 43 43 H 1.08994 * 110.40078 * 234.81745 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5725 -3.2226 -0.5747 12 6 4.3485 -2.9659 1.4615 13 6 5.8884 -2.8495 1.7056 14 6 6.2768 -1.7617 0.7243 15 1 5.9230 -0.7865 1.0587 16 6 7.6524 -1.6581 0.0974 17 7 7.3630 -0.9897 -1.2096 18 6 8.2253 -0.2421 -1.9266 19 8 7.8722 0.2508 -2.9770 20 6 9.6279 -0.0186 -1.4231 21 6 10.3814 0.8449 -2.4019 22 6 11.0348 2.0448 -2.1030 23 6 11.5881 2.5134 -3.2456 24 7 11.2956 1.6405 -4.2323 25 1 11.5633 1.7188 -5.1614 26 7 10.5419 0.5985 -3.6768 27 6 5.9497 -1.2980 -1.5784 28 6 5.4920 -2.2802 -0.5476 29 1 5.8985 -3.2568 -0.8102 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3620 0.0007 32 1 3.8073 -2.3336 2.1653 33 1 4.0276 -4.0024 1.5639 34 1 6.0987 -2.5435 2.7304 35 1 6.3926 -3.7866 1.4693 36 1 8.3114 -1.0424 0.7095 37 1 8.0827 -2.6475 -0.0573 38 1 9.5911 0.4787 -0.4539 39 1 10.1342 -0.9783 -1.3201 40 1 11.0884 2.5145 -1.1320 41 1 12.1611 3.4229 -3.3493 42 1 5.3411 -0.3946 -1.5393 43 1 5.9050 -1.7446 -2.5717 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026224488.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:39 Heat of formation + Delta-G solvation = 48.993972 kcal Electronic energy + Delta-G solvation = -24951.439826 eV Core-core repulsion = 21419.049103 eV Total energy + Delta-G solvation = -3532.390723 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.13481 -41.62202 -39.75618 -36.75357 -35.05267 -33.95861 -32.99607 -31.28873 -30.82491 -30.11237 -28.99750 -27.04156 -24.84013 -24.32240 -22.50004 -21.30930 -21.11243 -20.48667 -19.84605 -19.68708 -19.00059 -17.81206 -17.46457 -16.76943 -16.42423 -15.93784 -15.76521 -15.50890 -15.34630 -14.96747 -14.64297 -14.53361 -14.37647 -13.97060 -13.76859 -13.53678 -13.48174 -13.31241 -13.00179 -12.89646 -12.60287 -12.34090 -12.24169 -11.94433 -11.87483 -11.57852 -11.56755 -11.41996 -11.04491 -10.93224 -10.82923 -10.35310 -9.70542 -9.60722 -9.28995 -8.03995 -5.34601 1.02399 1.31293 1.34814 1.40100 1.64585 1.67439 2.03502 2.12868 2.44085 3.00288 3.28902 3.55281 3.57889 3.74074 3.90652 3.99182 4.08916 4.15987 4.34255 4.35689 4.48068 4.49598 4.53302 4.64891 4.68593 4.74812 4.79892 4.86657 4.87859 4.96387 5.04293 5.05582 5.14151 5.21717 5.27187 5.40158 5.46147 5.66114 5.70364 5.80809 6.22066 6.51698 6.53272 6.78233 7.07787 7.17546 7.86203 8.02693 9.18102 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.016699 B = 0.003757 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.321076 B = 7450.248737 C = 8524.610443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.061 4.061 3 Si 0.944 3.056 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.299 1.299 7 C -0.219 4.219 8 H 0.063 0.937 9 N -0.747 5.747 10 C 0.188 3.812 11 H 0.048 0.952 12 C -0.140 4.140 13 C -0.081 4.081 14 C -0.115 4.115 15 H 0.065 0.935 16 C 0.119 3.881 17 N -0.625 5.625 18 C 0.521 3.479 19 O -0.586 6.586 20 C -0.046 4.046 21 C 0.066 3.934 22 C -0.287 4.287 23 C 0.065 3.935 24 N -0.479 5.479 25 H 0.448 0.552 26 N -0.321 5.321 27 C 0.133 3.867 28 C -0.127 4.127 29 H 0.103 0.897 30 H 0.256 0.744 31 H 0.361 0.639 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.146 0.854 39 H 0.136 0.864 40 H 0.171 0.829 41 H 0.219 0.781 42 H 0.034 0.966 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.185 -1.219 2.051 30.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.252 4.252 3 Si 0.773 3.227 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.226 1.226 7 C -0.350 4.350 8 H 0.081 0.919 9 N -0.390 5.390 10 C 0.079 3.921 11 H 0.066 0.934 12 C -0.180 4.180 13 C -0.119 4.119 14 C -0.134 4.134 15 H 0.083 0.917 16 C -0.001 4.001 17 N -0.360 5.360 18 C 0.310 3.690 19 O -0.466 6.466 20 C -0.086 4.086 21 C -0.101 4.101 22 C -0.316 4.316 23 C -0.082 4.082 24 N -0.189 5.189 25 H 0.293 0.707 26 N -0.145 5.145 27 C 0.010 3.990 28 C -0.146 4.146 29 H 0.121 0.879 30 H 0.065 0.935 31 H 0.195 0.805 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.164 0.836 39 H 0.154 0.846 40 H 0.188 0.812 41 H 0.236 0.764 42 H 0.053 0.947 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 29.628 -1.800 0.491 29.686 hybrid contribution -0.493 1.958 -0.379 2.055 sum 29.134 0.159 0.112 29.135 Atomic orbital electron populations 1.69857 1.06847 1.26354 1.60432 1.25343 0.95920 1.00551 1.03436 0.85577 0.78142 0.80890 0.78106 1.19860 1.19402 1.22608 1.19083 0.82723 0.93353 1.39876 0.91938 1.42828 1.02316 1.03903 1.89974 1.20329 0.89465 0.87200 0.95077 0.93403 1.23626 0.96943 1.00843 0.96596 1.21775 0.93748 0.97866 0.98531 1.22677 0.95344 1.00006 0.95352 0.91687 1.22105 0.96394 0.99753 0.81840 1.49932 1.11554 1.50765 1.23783 1.20883 0.87739 0.77012 0.83325 1.90729 1.79292 1.51195 1.25363 1.20133 0.88356 1.02093 0.98058 1.22037 0.98733 0.97135 0.92208 1.21803 1.09421 0.98706 1.01630 1.23291 0.99991 0.97196 0.87728 1.46461 1.42761 1.17778 1.11878 0.70655 1.77317 1.14748 1.11721 1.10747 1.20663 0.82329 0.97968 0.98003 1.21937 0.97226 0.99823 0.95645 0.87883 0.93481 0.80542 0.93297 0.91054 0.90048 0.88435 0.86876 0.87648 0.83616 0.84617 0.81169 0.76413 0.94722 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.21 13.97 21.65 0.30 -63.91 16 2 C -0.06 -3.68 5.50 84.86 0.47 -3.22 16 3 Si 0.94 47.86 27.74 68.60 1.90 49.76 16 4 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.27 -13.03 6.52 99.48 0.65 -12.38 16 6 H -0.30 -15.49 7.11 99.48 0.71 -14.78 16 7 C -0.22 -12.51 10.45 84.03 0.88 -11.63 16 8 H 0.06 3.87 8.06 -2.91 -0.02 3.84 16 9 N -0.75 -34.63 4.69 -323.02 -1.52 -36.14 16 10 C 0.19 6.67 3.45 44.98 0.16 6.83 16 11 H 0.05 1.82 8.10 -2.38 -0.02 1.80 16 12 C -0.14 -4.03 6.74 32.80 0.22 -3.81 16 13 C -0.08 -1.52 6.62 31.29 0.21 -1.31 16 14 C -0.11 -2.50 3.08 -9.90 -0.03 -2.53 16 15 H 0.06 1.77 7.96 -2.39 -0.02 1.75 16 16 C 0.12 1.89 6.49 85.29 0.55 2.44 16 17 N -0.63 -16.41 3.43 -815.39 -2.79 -19.21 16 18 C 0.52 15.28 7.87 87.65 0.69 15.97 16 19 O -0.59 -24.04 15.94 -3.05 -0.05 -24.09 16 20 C -0.05 -0.84 5.33 29.10 0.16 -0.69 16 21 C 0.07 1.56 6.01 43.10 0.26 1.82 16 22 C -0.29 -5.06 10.72 21.99 0.24 -4.82 16 23 C 0.07 0.93 11.99 83.54 1.00 1.93 16 24 N -0.48 -9.11 7.36 -57.59 -0.42 -9.54 16 25 H 0.45 5.66 8.96 -213.32 -1.91 3.75 16 26 N -0.32 -8.98 12.06 -47.38 -0.57 -9.55 16 27 C 0.13 4.39 6.65 84.74 0.56 4.96 16 28 C -0.13 -3.56 2.27 -11.10 -0.03 -3.58 16 29 H 0.10 2.36 7.99 -2.39 -0.02 2.34 16 30 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 31 H 0.36 16.74 4.59 -92.71 -0.43 16.31 16 32 H 0.05 1.70 7.98 -2.39 -0.02 1.68 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.11 1.07 7.58 -2.38 -0.02 1.05 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.15 1.63 7.88 -2.39 -0.02 1.61 16 39 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 41 H 0.22 0.90 8.06 -2.91 -0.02 0.88 16 42 H 0.03 1.41 7.17 -2.39 -0.02 1.39 16 43 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -87.99 348.65 0.82 -87.17 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -1.36 Total: 23.17 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 5.33 Total: 2.34 kcal Atomic # 7 Polarization: -133.35 SS G_CDS: -5.00 Total: -138.36 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.05 Total: -24.09 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 1.90 Total: 49.76 kcal Total: -87.99 0.82 -87.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026224488.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.165 kcal (2) G-P(sol) polarization free energy of solvation -87.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds