Wall clock time and date at job start Fri Apr 10 2020 17:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99843 * 2 1 4 4 H 1.48500 * 109.46699 * 239.99547 * 3 2 1 5 5 H 1.48499 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47220 * 119.99683 * 3 2 1 7 7 C 1.38809 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00434 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99547 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99903 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.57843 * 32.28688 * 10 9 7 12 12 C 1.56001 * 110.52731 * 269.57233 * 10 9 7 13 13 C 1.56336 * 105.76776 * 248.32912 * 12 10 9 14 14 C 1.51560 * 101.81460 * 25.43777 * 13 12 10 15 15 H 1.09005 * 111.11610 * 71.47059 * 14 13 12 16 16 C 1.51768 * 123.23318 * 208.17985 * 14 13 12 17 17 N 1.49632 * 102.37347 * 151.79129 * 16 14 13 18 18 C 1.34771 * 126.07283 * 154.28480 * 17 16 14 19 19 O 1.21281 * 119.99650 * 179.68727 * 18 17 16 20 20 C 1.50702 * 120.00257 * 359.68610 * 18 17 16 21 21 N 1.46500 * 109.46999 * 179.97438 * 20 18 17 22 22 C 1.36876 * 126.40416 * 270.28711 * 21 20 18 23 23 C 1.34665 * 106.82156 * 180.19389 * 22 21 20 24 24 N 1.34127 * 108.01668 * 359.58498 * 23 22 21 25 25 C 1.30500 * 109.25894 * 0.26753 * 24 23 22 26 26 C 1.49287 * 107.84708 * 334.01991 * 17 16 14 27 27 C 1.49704 * 104.68200 * 353.85448 * 26 17 16 28 28 H 1.09003 * 108.53832 * 281.45349 * 27 26 17 29 29 H 0.97005 * 119.99660 * 0.02562 * 1 2 3 30 30 H 0.96992 * 120.00312 * 0.02562 * 9 7 2 31 31 H 1.09003 * 110.19153 * 129.25532 * 12 10 9 32 32 H 1.09001 * 110.25718 * 7.43848 * 12 10 9 33 33 H 1.09004 * 110.96183 * 267.30357 * 13 12 10 34 34 H 1.09001 * 110.95746 * 143.56916 * 13 12 10 35 35 H 1.08996 * 110.93603 * 33.54779 * 16 14 13 36 36 H 1.09002 * 110.79058 * 269.96612 * 16 14 13 37 37 H 1.09007 * 109.46740 * 60.00480 * 20 18 17 38 38 H 1.08993 * 109.47111 * 300.00400 * 20 18 17 39 39 H 1.08002 * 126.59064 * 0.08563 * 22 21 20 40 40 H 1.08002 * 125.99463 * 179.85418 * 23 22 21 41 41 H 1.07994 * 125.64966 * 180.02562 * 25 24 23 42 42 H 1.09004 * 110.39353 * 112.65969 * 26 17 16 43 43 H 1.09004 * 110.39692 * 234.93522 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9966 -3.5573 0.5456 12 6 2.3220 -4.1360 -1.4604 13 6 1.4444 -5.4154 -1.6530 14 6 0.3399 -5.1894 -0.6401 15 1 -0.3309 -4.3927 -0.9617 16 6 -0.4137 -6.3207 0.0351 17 7 -0.8098 -5.7074 1.3412 18 6 -1.8648 -6.0666 2.0990 19 8 -2.0813 -5.4954 3.1468 20 6 -2.7756 -7.1778 1.6444 21 7 -3.8370 -7.3753 2.6347 22 6 -3.7934 -8.2135 3.7160 23 6 -4.9732 -8.0891 4.3532 24 7 -5.7134 -7.1925 3.6846 25 6 -5.0393 -6.7606 2.6540 26 6 0.1751 -4.6314 1.6589 27 6 1.2199 -4.7467 0.5930 28 1 1.8796 -5.5777 0.8428 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0002 31 1 3.3763 -4.3797 -1.5916 32 1 2.0235 -3.3647 -2.1703 33 1 2.0113 -6.3162 -1.4174 34 1 1.0418 -5.4633 -2.6648 35 1 0.2358 -7.1816 0.1929 36 1 -1.2938 -6.5993 -0.5444 37 1 -2.2013 -8.0983 1.5395 38 1 -3.2187 -6.9145 0.6840 39 1 -2.9715 -8.8531 4.0020 40 1 -5.2696 -8.6156 5.2484 41 1 -5.3854 -6.0321 1.9359 42 1 -0.3042 -3.6533 1.6168 43 1 0.6139 -4.7964 2.6429 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026430859.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:11 Heat of formation + Delta-G solvation = 69.689242 kcal Electronic energy + Delta-G solvation = -24948.297132 eV Core-core repulsion = 21416.803823 eV Total energy + Delta-G solvation = -3531.493309 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.13994 -40.60179 -38.73159 -35.36614 -34.07999 -33.39815 -30.94047 -30.17853 -29.48752 -28.58480 -27.54145 -25.53298 -23.52243 -23.09376 -21.41586 -21.29620 -20.17753 -19.55677 -18.93576 -17.76363 -17.37451 -17.16078 -16.10763 -15.70554 -15.11735 -14.71037 -14.47096 -14.39692 -14.19543 -13.92000 -13.85775 -13.67079 -13.27110 -12.92215 -12.78185 -12.67705 -12.45922 -11.97435 -11.53750 -11.34448 -11.05533 -10.89480 -10.77253 -10.57388 -10.37515 -10.34523 -10.16765 -10.06270 -9.81112 -9.64879 -9.50424 -8.96687 -8.71526 -8.55836 -7.03931 -5.82380 -3.12076 1.86249 2.42311 2.46780 2.93530 3.16617 3.40570 3.45550 3.46655 3.99919 4.25741 4.35129 4.54359 4.64295 4.67647 4.74299 4.83985 4.97519 5.17848 5.20133 5.33370 5.35303 5.48845 5.52370 5.60182 5.66837 5.73887 5.81070 5.88430 6.02835 6.10599 6.12828 6.18165 6.26844 6.31442 6.43689 6.55905 6.65315 6.71579 6.95720 7.02800 7.37851 7.65040 7.97582 8.01848 8.35575 9.47112 10.02429 10.36827 11.39726 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017987 B = 0.003387 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.316928 B = 8263.795676 C = 9360.780022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.718 5.718 10 C 0.196 3.804 11 H 0.057 0.943 12 C -0.146 4.146 13 C -0.098 4.098 14 C -0.125 4.125 15 H 0.096 0.904 16 C 0.113 3.887 17 N -0.620 5.620 18 C 0.507 3.493 19 O -0.522 6.522 20 C 0.092 3.908 21 N -0.445 5.445 22 C -0.048 4.048 23 C -0.031 4.031 24 N -0.496 5.496 25 C 0.195 3.805 26 C 0.134 3.866 27 C -0.120 4.120 28 H 0.068 0.932 29 H 0.256 0.744 30 H 0.384 0.616 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.171 0.829 40 H 0.168 0.832 41 H 0.203 0.797 42 H 0.086 0.914 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.869 -19.915 -1.718 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.359 5.359 10 C 0.084 3.916 11 H 0.075 0.925 12 C -0.187 4.187 13 C -0.137 4.137 14 C -0.144 4.144 15 H 0.114 0.886 16 C -0.009 4.009 17 N -0.356 5.356 18 C 0.293 3.707 19 O -0.397 6.397 20 C -0.035 4.035 21 N -0.128 5.128 22 C -0.180 4.180 23 C -0.178 4.178 24 N -0.214 5.214 25 C -0.087 4.087 26 C 0.013 3.987 27 C -0.140 4.140 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.218 0.782 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.188 0.812 40 H 0.186 0.814 41 H 0.220 0.780 42 H 0.104 0.896 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.650 -19.205 -0.932 19.409 hybrid contribution 1.156 0.731 -0.348 1.411 sum -1.494 -18.473 -1.279 18.578 Atomic orbital electron populations 1.69639 1.05117 1.25917 1.57225 1.24741 0.95478 0.97717 1.02712 0.86288 0.78552 0.83610 0.77825 1.21295 1.21711 1.21236 1.19191 0.90983 0.84075 1.43290 0.91160 1.42413 1.05667 0.99575 1.88219 1.20044 0.94003 0.85269 0.92256 0.92480 1.23876 0.98013 0.96112 1.00675 1.21827 0.95558 0.98639 0.97632 1.22671 0.97384 0.97877 0.96481 0.88615 1.21919 0.99343 0.96044 0.83569 1.49853 1.27026 1.36728 1.21964 1.20273 0.81104 0.84827 0.84499 1.90818 1.71447 1.54478 1.22966 1.21666 0.89424 1.00022 0.92411 1.45033 1.13526 1.32728 1.21555 1.22644 1.02042 1.01482 0.91849 1.22238 0.92087 1.01422 1.02055 1.70286 1.32161 1.12895 1.06015 1.24987 0.82840 1.00847 1.00043 1.20972 0.88860 0.91064 0.97784 1.22058 0.96439 1.01031 0.94480 0.91356 0.93379 0.78152 0.92792 0.90522 0.91964 0.91982 0.90744 0.90599 0.86276 0.85902 0.81181 0.81441 0.78039 0.89574 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.39 13.06 55.49 0.72 -26.67 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.44 9.96 -15.06 -0.15 -6.59 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -16.53 4.85 -53.45 -0.26 -16.79 16 10 C 0.20 3.44 3.46 -67.95 -0.24 3.20 16 11 H 0.06 1.04 8.09 -51.93 -0.42 0.62 16 12 C -0.15 -2.19 6.74 -23.33 -0.16 -2.35 16 13 C -0.10 -1.12 6.61 -25.67 -0.17 -1.29 16 14 C -0.13 -1.52 3.09 -89.33 -0.28 -1.80 16 15 H 0.10 1.44 7.87 -51.93 -0.41 1.03 16 16 C 0.11 1.04 6.50 -2.92 -0.02 1.03 16 17 N -0.62 -7.90 3.42 -171.42 -0.59 -8.49 16 18 C 0.51 6.84 7.95 -10.99 -0.09 6.75 16 19 O -0.52 -9.77 16.79 5.56 0.09 -9.67 16 20 C 0.09 0.80 5.68 -5.19 -0.03 0.77 16 21 N -0.45 -5.06 2.24 -119.87 -0.27 -5.33 16 22 C -0.05 -0.54 11.58 -16.57 -0.19 -0.73 16 23 C -0.03 -0.39 11.87 -17.81 -0.21 -0.60 16 24 N -0.50 -7.24 11.25 -14.67 -0.17 -7.40 16 25 C 0.20 2.47 12.56 -90.37 -1.14 1.33 16 26 C 0.13 2.11 6.67 -4.13 -0.03 2.08 16 27 C -0.12 -1.72 2.25 -91.24 -0.21 -1.92 16 28 H 0.07 0.86 7.98 -51.93 -0.41 0.44 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.38 9.51 6.72 -40.82 -0.27 9.24 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.36 7.99 -51.93 -0.41 0.95 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.51 7.58 -51.93 -0.39 0.12 16 37 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.12 0.74 7.91 -51.93 -0.41 0.33 16 39 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.20 1.97 8.06 -52.49 -0.42 1.55 16 42 H 0.09 1.68 7.22 -51.93 -0.37 1.31 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 353.43 15.07 5.33 5.33 Total: -1.00 -34.60 353.43 -9.61 -44.21 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.46 Total: 8.40 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -2.99 Total: -0.48 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: -0.56 Total: -64.68 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.60 -9.61 -44.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026430859.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.902 kcal (2) G-P(sol) polarization free energy of solvation -34.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds