Wall clock time and date at job start Fri Apr 10 2020 17:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99843 * 2 1 4 4 H 1.48500 * 109.46699 * 239.99547 * 3 2 1 5 5 H 1.48499 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47220 * 119.99683 * 3 2 1 7 7 C 1.38809 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00434 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99547 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99903 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.57843 * 32.28688 * 10 9 7 12 12 C 1.56001 * 110.52731 * 269.57233 * 10 9 7 13 13 C 1.56336 * 105.76776 * 248.32912 * 12 10 9 14 14 C 1.51560 * 101.81460 * 25.43777 * 13 12 10 15 15 H 1.09005 * 111.11610 * 71.47059 * 14 13 12 16 16 C 1.51768 * 123.23318 * 208.17985 * 14 13 12 17 17 N 1.49632 * 102.37347 * 151.79129 * 16 14 13 18 18 C 1.34771 * 126.07283 * 154.28480 * 17 16 14 19 19 O 1.21281 * 119.99650 * 179.68727 * 18 17 16 20 20 C 1.50702 * 120.00257 * 359.68610 * 18 17 16 21 21 N 1.46500 * 109.46999 * 179.97438 * 20 18 17 22 22 C 1.36876 * 126.40416 * 270.28711 * 21 20 18 23 23 C 1.34665 * 106.82156 * 180.19389 * 22 21 20 24 24 N 1.34127 * 108.01668 * 359.58498 * 23 22 21 25 25 C 1.30500 * 109.25894 * 0.26753 * 24 23 22 26 26 C 1.49287 * 107.84708 * 334.01991 * 17 16 14 27 27 C 1.49704 * 104.68200 * 353.85448 * 26 17 16 28 28 H 1.09003 * 108.53832 * 281.45349 * 27 26 17 29 29 H 0.97005 * 119.99660 * 0.02562 * 1 2 3 30 30 H 0.96992 * 120.00312 * 0.02562 * 9 7 2 31 31 H 1.09003 * 110.19153 * 129.25532 * 12 10 9 32 32 H 1.09001 * 110.25718 * 7.43848 * 12 10 9 33 33 H 1.09004 * 110.96183 * 267.30357 * 13 12 10 34 34 H 1.09001 * 110.95746 * 143.56916 * 13 12 10 35 35 H 1.08996 * 110.93603 * 33.54779 * 16 14 13 36 36 H 1.09002 * 110.79058 * 269.96612 * 16 14 13 37 37 H 1.09007 * 109.46740 * 60.00480 * 20 18 17 38 38 H 1.08993 * 109.47111 * 300.00400 * 20 18 17 39 39 H 1.08002 * 126.59064 * 0.08563 * 22 21 20 40 40 H 1.08002 * 125.99463 * 179.85418 * 23 22 21 41 41 H 1.07994 * 125.64966 * 180.02562 * 25 24 23 42 42 H 1.09004 * 110.39353 * 112.65969 * 26 17 16 43 43 H 1.09004 * 110.39692 * 234.93522 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9966 -3.5573 0.5456 12 6 2.3220 -4.1360 -1.4604 13 6 1.4444 -5.4154 -1.6530 14 6 0.3399 -5.1894 -0.6401 15 1 -0.3309 -4.3927 -0.9617 16 6 -0.4137 -6.3207 0.0351 17 7 -0.8098 -5.7074 1.3412 18 6 -1.8648 -6.0666 2.0990 19 8 -2.0813 -5.4954 3.1468 20 6 -2.7756 -7.1778 1.6444 21 7 -3.8370 -7.3753 2.6347 22 6 -3.7934 -8.2135 3.7160 23 6 -4.9732 -8.0891 4.3532 24 7 -5.7134 -7.1925 3.6846 25 6 -5.0393 -6.7606 2.6540 26 6 0.1751 -4.6314 1.6589 27 6 1.2199 -4.7467 0.5930 28 1 1.8796 -5.5777 0.8428 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0002 31 1 3.3763 -4.3797 -1.5916 32 1 2.0235 -3.3647 -2.1703 33 1 2.0113 -6.3162 -1.4174 34 1 1.0418 -5.4633 -2.6648 35 1 0.2358 -7.1816 0.1929 36 1 -1.2938 -6.5993 -0.5444 37 1 -2.2013 -8.0983 1.5395 38 1 -3.2187 -6.9145 0.6840 39 1 -2.9715 -8.8531 4.0020 40 1 -5.2696 -8.6156 5.2484 41 1 -5.3854 -6.0321 1.9359 42 1 -0.3042 -3.6533 1.6168 43 1 0.6139 -4.7964 2.6429 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026430859.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:11 Heat of formation + Delta-G solvation = 47.158916 kcal Electronic energy + Delta-G solvation = -24949.274120 eV Core-core repulsion = 21416.803823 eV Total energy + Delta-G solvation = -3532.470297 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.00018 -41.68820 -39.86946 -36.72093 -35.09222 -34.92661 -32.58928 -31.31036 -30.37324 -29.87389 -28.43912 -26.89585 -25.17082 -24.34005 -22.29261 -22.18507 -21.16716 -20.52230 -20.26763 -19.40583 -18.47755 -18.17478 -17.20439 -16.78593 -16.56063 -15.98587 -15.81876 -15.47693 -15.20913 -15.14729 -14.85040 -14.79326 -14.63280 -14.08634 -13.82428 -13.61533 -13.35611 -13.27489 -13.04481 -12.86007 -12.61448 -12.36096 -12.25572 -12.06003 -11.90148 -11.49852 -11.39743 -11.38249 -10.99519 -10.95480 -10.87536 -10.48671 -9.79763 -9.42533 -8.98417 -7.94638 -5.21676 0.97461 1.44140 1.45198 1.47494 1.53451 1.65297 2.05083 2.24588 2.55546 3.00433 3.37324 3.39839 3.72510 3.80959 3.87095 3.93861 4.00454 4.08740 4.11962 4.19642 4.33804 4.48901 4.50530 4.57892 4.65021 4.69290 4.74011 4.76481 4.85829 4.97398 5.00271 5.08130 5.20757 5.25949 5.28687 5.41788 5.45613 5.54076 5.70357 5.82696 6.17786 6.27908 6.42660 6.97582 7.13097 7.34029 8.12851 8.33303 9.28444 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017987 B = 0.003387 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.316928 B = 8263.795676 C = 9360.780022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.967 3.033 4 H -0.276 1.276 5 H -0.300 1.300 6 H -0.281 1.281 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.731 5.731 10 C 0.181 3.819 11 H 0.048 0.952 12 C -0.141 4.141 13 C -0.082 4.082 14 C -0.113 4.113 15 H 0.058 0.942 16 C 0.118 3.882 17 N -0.616 5.616 18 C 0.502 3.498 19 O -0.588 6.588 20 C 0.100 3.900 21 N -0.447 5.447 22 C -0.043 4.043 23 C -0.060 4.060 24 N -0.537 5.537 25 C 0.179 3.821 26 C 0.138 3.862 27 C -0.124 4.124 28 H 0.102 0.898 29 H 0.248 0.752 30 H 0.371 0.629 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.166 0.834 38 H 0.158 0.842 39 H 0.202 0.798 40 H 0.183 0.817 41 H 0.220 0.780 42 H 0.033 0.967 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.387 -23.543 -3.386 23.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.797 3.203 4 H -0.202 1.202 5 H -0.227 1.227 6 H -0.207 1.207 7 C -0.368 4.368 8 H 0.094 0.906 9 N -0.371 5.371 10 C 0.072 3.928 11 H 0.066 0.934 12 C -0.181 4.181 13 C -0.120 4.120 14 C -0.132 4.132 15 H 0.076 0.924 16 C -0.001 4.001 17 N -0.351 5.351 18 C 0.290 3.710 19 O -0.468 6.468 20 C -0.025 4.025 21 N -0.130 5.130 22 C -0.175 4.175 23 C -0.206 4.206 24 N -0.256 5.256 25 C -0.104 4.104 26 C 0.015 3.985 27 C -0.143 4.143 28 H 0.120 0.880 29 H 0.057 0.943 30 H 0.203 0.797 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.183 0.817 38 H 0.175 0.825 39 H 0.219 0.781 40 H 0.200 0.800 41 H 0.236 0.764 42 H 0.051 0.949 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.103 -22.904 -2.652 23.083 hybrid contribution 0.781 1.844 0.206 2.013 sum -0.322 -21.060 -2.445 21.203 Atomic orbital electron populations 1.69809 1.06603 1.25822 1.59951 1.25495 0.96234 1.00948 1.04245 0.85295 0.77196 0.79662 0.78135 1.20209 1.22676 1.20725 1.19609 0.91421 0.85387 1.40348 0.90583 1.42596 1.05267 1.00847 1.88350 1.20399 0.93768 0.84139 0.94508 0.93414 1.23669 1.00076 0.97286 0.97102 1.21767 0.94420 0.97660 0.98104 1.22618 0.96863 0.98239 0.95508 0.92397 1.22244 1.01340 0.95304 0.81253 1.49898 1.26217 1.35701 1.23247 1.21238 0.81047 0.85181 0.83516 1.90796 1.72980 1.56997 1.26005 1.21971 0.88304 0.99729 0.92497 1.45209 1.13570 1.32167 1.22046 1.23161 1.02165 1.01034 0.91154 1.22674 0.92962 1.01920 1.03080 1.70226 1.33893 1.14190 1.07286 1.25385 0.83592 1.01250 1.00147 1.20663 0.89765 0.90016 0.98048 1.21898 0.96732 1.00486 0.95207 0.87955 0.94340 0.79651 0.90962 0.93987 0.88166 0.90581 0.86759 0.86761 0.81702 0.82458 0.78130 0.80036 0.76378 0.94892 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.86 13.06 21.65 0.28 -59.57 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 3 Si 0.97 46.33 29.55 68.60 2.03 48.36 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.24 -12.76 9.96 84.03 0.84 -11.93 16 8 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 9 N -0.73 -34.99 4.85 -323.01 -1.57 -36.56 16 10 C 0.18 6.32 3.46 44.97 0.16 6.47 16 11 H 0.05 1.72 8.09 -2.39 -0.02 1.70 16 12 C -0.14 -3.98 6.74 32.80 0.22 -3.76 16 13 C -0.08 -1.49 6.61 31.28 0.21 -1.28 16 14 C -0.11 -2.41 3.09 -9.96 -0.03 -2.44 16 15 H 0.06 1.70 7.87 -2.38 -0.02 1.68 16 16 C 0.12 1.56 6.50 85.37 0.55 2.11 16 17 N -0.62 -14.35 3.42 -814.64 -2.79 -17.14 16 18 C 0.50 12.58 7.95 87.66 0.70 13.27 16 19 O -0.59 -22.34 16.79 -3.03 -0.05 -22.39 16 20 C 0.10 1.31 5.68 85.63 0.49 1.79 16 21 N -0.45 -9.10 2.24 -533.16 -1.19 -10.29 16 22 C -0.04 -0.86 11.58 83.09 0.96 0.10 16 23 C -0.06 -1.47 11.87 83.52 0.99 -0.48 16 24 N -0.54 -15.73 11.25 -200.32 -2.25 -17.98 16 25 C 0.18 4.38 12.56 180.26 2.26 6.64 16 26 C 0.14 4.41 6.67 84.78 0.57 4.98 16 27 C -0.12 -3.35 2.25 -11.19 -0.03 -3.37 16 28 H 0.10 2.15 7.98 -2.39 -0.02 2.13 16 29 H 0.25 15.03 8.31 -92.70 -0.77 14.26 16 30 H 0.37 19.53 6.72 -92.71 -0.62 18.91 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.04 1.48 7.99 -2.39 -0.02 1.46 16 33 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.11 0.75 7.58 -2.39 -0.02 0.73 16 37 H 0.17 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.16 1.03 7.91 -2.39 -0.02 1.01 16 39 H 0.20 2.58 8.06 -2.91 -0.02 2.56 16 40 H 0.18 3.52 8.06 -2.91 -0.02 3.49 16 41 H 0.22 4.14 8.06 -2.91 -0.02 4.12 16 42 H 0.03 1.39 7.22 -2.38 -0.02 1.38 16 43 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -83.99 353.43 3.19 -80.79 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.39 Total: 26.62 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 8.35 Total: 8.16 kcal Atomic # 7 Polarization: -134.02 SS G_CDS: -7.52 Total: -141.54 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.05 Total: -22.39 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -83.99 3.19 -80.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026430859.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.954 kcal (2) G-P(sol) polarization free energy of solvation -83.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds