Wall clock time and date at job start Fri Apr 10 2020 17:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33326 * 126.10778 * 2 1 4 4 C 1.30856 * 109.68360 * 179.97438 * 3 2 1 5 5 N 1.34495 * 109.16524 * 0.02562 * 4 3 2 6 6 H 0.97007 * 126.46964 * 179.97438 * 5 4 3 7 7 C 1.36667 * 126.10818 * 180.27253 * 2 1 3 8 8 C 1.46759 * 126.84213 * 359.97438 * 7 2 1 9 9 O 1.21682 * 120.00509 * 6.40847 * 8 7 2 10 10 N 1.34775 * 119.99840 * 186.40883 * 8 7 2 11 11 C 1.49629 * 126.07484 * 5.28785 * 10 8 7 12 12 C 1.51763 * 102.38179 * 154.30321 * 11 10 8 13 13 H 1.09000 * 111.73364 * 288.25219 * 12 11 10 14 14 C 1.51851 * 122.16885 * 151.26924 * 12 11 10 15 15 C 1.56332 * 100.96435 * 207.12177 * 14 12 11 16 16 C 1.56001 * 105.77105 * 26.27310 * 15 14 12 17 17 H 1.09001 * 110.64519 * 125.64345 * 16 15 14 18 18 N 1.46493 * 110.52969 * 248.34008 * 16 15 14 19 19 C 1.36940 * 120.00132 * 269.55995 * 18 16 15 20 20 H 1.08002 * 119.99862 * 0.02562 * 19 18 16 21 21 C 1.38807 * 120.00237 * 179.97438 * 19 18 16 22 22 N 1.31625 * 120.00056 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46969 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47691 * 120.00023 * 23 21 19 26 26 H 1.48504 * 109.47311 * 240.00193 * 23 21 19 27 27 C 1.49711 * 103.98317 * 6.96827 * 16 15 14 28 28 H 1.08994 * 108.55336 * 76.80223 * 27 16 15 29 29 C 1.49293 * 126.07495 * 185.60050 * 10 8 7 30 30 H 1.09007 * 109.46822 * 89.96965 * 1 2 3 31 31 H 1.08996 * 109.46842 * 209.97020 * 1 2 3 32 32 H 1.08999 * 109.46833 * 329.97552 * 1 2 3 33 33 H 1.08002 * 125.41474 * 180.02562 * 4 3 2 34 34 H 1.08991 * 110.80247 * 272.63770 * 11 10 8 35 35 H 1.09005 * 110.80159 * 36.13562 * 11 10 8 36 36 H 1.09001 * 110.63129 * 89.58093 * 14 12 11 37 37 H 1.09002 * 112.11730 * 325.28638 * 14 12 11 38 38 H 1.08999 * 110.18801 * 267.20316 * 15 14 12 39 39 H 1.08998 * 110.19557 * 145.35206 * 15 14 12 40 40 H 0.97001 * 120.00112 * 89.56530 * 18 16 15 41 41 H 0.96996 * 119.99861 * 179.97438 * 22 21 19 42 42 H 1.09002 * 110.39414 * 292.37998 * 29 10 8 43 43 H 1.08995 * 110.39401 * 54.77553 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0772 0.0000 4 6 3.5478 0.7072 0.0006 5 7 3.6122 -0.6362 0.0004 6 1 4.4189 -1.1749 0.0003 7 6 2.3124 -1.1041 -0.0053 8 6 1.8821 -2.5072 -0.0114 9 8 0.7025 -2.7814 -0.1298 10 7 2.7935 -3.4921 0.1141 11 6 4.2553 -3.3115 0.3776 12 6 4.6288 -4.6197 1.0501 13 1 4.2261 -4.6832 2.0610 14 6 6.0242 -5.2104 0.9504 15 6 5.7158 -6.7328 1.1269 16 6 4.2477 -6.9277 0.6366 17 1 4.1979 -7.7011 -0.1298 18 7 3.3708 -7.2635 1.7611 19 6 3.1665 -8.5738 2.1025 20 1 3.6522 -9.3597 1.5430 21 6 2.3361 -8.8920 3.1683 22 7 1.7446 -7.9343 3.8505 23 14 2.0579 -10.6793 3.6345 24 1 2.8306 -11.5559 2.7180 25 1 2.5093 -10.9027 5.0314 26 1 0.6123 -11.0006 3.5241 27 6 3.8782 -5.5954 0.0624 28 1 4.3465 -5.4979 -0.9169 29 6 2.5251 -4.9569 0.0086 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8898 0.5142 33 1 4.3970 1.3745 0.0011 34 1 4.8038 -3.1829 -0.5555 35 1 4.4267 -2.4692 1.0479 36 1 6.6552 -4.8439 1.7600 37 1 6.4840 -5.0155 -0.0185 38 1 5.8025 -7.0150 2.1761 39 1 6.3975 -7.3278 0.5191 40 1 2.9349 -6.5577 2.2637 41 1 1.1640 -8.1567 4.5950 42 1 1.9132 -5.2923 0.8460 43 1 2.0343 -5.1859 -0.9373 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026432947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:15 Heat of formation + Delta-G solvation = 59.968385 kcal Electronic energy + Delta-G solvation = -25371.789588 eV Core-core repulsion = 21839.874751 eV Total energy + Delta-G solvation = -3531.914837 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.41118 -40.49211 -38.42098 -35.46952 -33.58936 -33.18317 -31.39435 -30.90297 -29.53919 -28.66920 -27.13570 -25.64824 -23.91622 -23.30879 -22.24357 -21.25648 -20.10668 -19.62368 -18.89997 -17.77902 -17.48369 -16.31809 -16.26788 -15.74731 -15.08121 -14.85606 -14.71767 -14.40837 -14.28903 -13.69539 -13.53899 -13.05877 -12.94237 -12.83519 -12.70710 -12.61718 -12.14062 -11.97951 -11.55928 -11.33625 -11.04762 -10.90324 -10.80856 -10.57810 -10.46081 -10.40452 -10.17218 -10.10080 -9.95237 -9.68079 -9.63326 -8.97199 -8.82997 -8.47978 -7.03144 -5.81566 -3.11445 1.20311 2.63072 2.70426 2.90494 3.29306 3.40566 3.46301 3.48765 4.03540 4.25581 4.45843 4.54865 4.76921 4.80666 4.98335 5.02277 5.09980 5.13832 5.26271 5.48755 5.51206 5.56571 5.67124 5.72639 5.77968 5.79938 5.87165 5.88173 6.01221 6.07636 6.13524 6.19615 6.25461 6.33457 6.42784 6.48672 6.55825 6.71815 6.95248 6.99824 7.42524 7.66793 7.74635 8.12804 8.36183 9.47861 10.03137 10.37465 11.40643 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019931 B = 0.003711 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.535375 B = 7543.351288 C = 8486.085810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.093 3.907 3 N -0.500 5.500 4 C 0.211 3.789 5 N -0.558 5.558 6 H 0.423 0.577 7 C -0.082 4.082 8 C 0.606 3.394 9 O -0.520 6.520 10 N -0.623 5.623 11 C 0.103 3.897 12 C -0.122 4.122 13 H 0.100 0.900 14 C -0.100 4.100 15 C -0.146 4.146 16 C 0.196 3.804 17 H 0.058 0.942 18 N -0.718 5.718 19 C -0.243 4.243 20 H 0.072 0.928 21 C -0.010 4.010 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.291 1.291 27 C -0.120 4.120 28 H 0.069 0.931 29 C 0.135 3.865 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.214 0.786 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.088 0.912 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.175 14.710 -9.191 19.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.041 4.041 3 N -0.220 5.220 4 C -0.073 4.073 5 N -0.167 5.167 6 H 0.266 0.734 7 C -0.198 4.198 8 C 0.395 3.605 9 O -0.396 6.396 10 N -0.359 5.359 11 C -0.019 4.019 12 C -0.141 4.141 13 H 0.118 0.882 14 C -0.139 4.139 15 C -0.187 4.187 16 C 0.085 3.915 17 H 0.076 0.924 18 N -0.359 5.359 19 C -0.374 4.374 20 H 0.090 0.910 21 C -0.207 4.207 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.140 4.140 28 H 0.088 0.912 29 C 0.014 3.986 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.231 0.769 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.131 15.203 -9.253 19.567 hybrid contribution 0.746 -1.679 0.542 1.916 sum 8.877 13.524 -8.712 18.374 Atomic orbital electron populations 1.20269 0.86456 1.03585 1.03028 1.21072 0.96931 0.86555 0.99575 1.70124 1.00469 1.30529 1.20893 1.25120 0.97439 0.82297 1.02435 1.43904 1.08378 1.08850 1.55605 0.73388 1.20967 0.84249 0.95025 1.19543 1.16447 0.84943 0.81940 0.77197 1.90846 1.15710 1.82466 1.50575 1.49750 1.07737 1.07151 1.71218 1.22029 0.81644 0.99043 0.99197 1.22760 0.98028 0.92725 1.00589 0.88203 1.21910 0.94065 0.96976 1.00900 1.23886 0.98786 0.93302 1.02729 1.20032 0.89306 0.91623 0.90576 0.92402 1.42437 1.53554 1.05642 1.34253 1.19280 1.23020 0.84115 1.11012 0.91043 1.24744 0.99993 0.97334 0.98593 1.69664 1.34754 1.30547 1.22848 0.86147 0.77589 0.84650 0.77949 1.20560 1.21917 1.21841 1.22095 0.95006 0.98026 0.98886 0.91249 1.20982 0.97365 0.77027 1.03207 0.90732 0.89368 0.91123 0.76940 0.90974 0.91231 0.92024 0.91733 0.90474 0.92759 0.78117 0.93468 0.89344 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 9.81 36.01 0.35 -0.62 16 2 C 0.09 1.30 7.15 -82.51 -0.59 0.71 16 3 N -0.50 -6.41 11.20 -10.64 -0.12 -6.53 16 4 C 0.21 1.91 13.01 -90.57 -1.18 0.74 16 5 N -0.56 -5.32 5.46 -10.79 -0.06 -5.38 16 6 H 0.42 2.87 5.56 -40.82 -0.23 2.64 16 7 C -0.08 -1.12 6.85 -82.15 -0.56 -1.68 16 8 C 0.61 9.74 7.84 -12.82 -0.10 9.64 16 9 O -0.52 -9.99 15.28 5.21 0.08 -9.92 16 10 N -0.62 -9.03 3.42 -172.93 -0.59 -9.62 16 11 C 0.10 1.10 5.02 -2.93 -0.01 1.09 16 12 C -0.12 -1.58 3.06 -89.19 -0.27 -1.85 16 13 H 0.10 1.60 7.73 -51.93 -0.40 1.20 16 14 C -0.10 -1.16 6.61 -25.53 -0.17 -1.33 16 15 C -0.15 -2.21 6.72 -23.34 -0.16 -2.37 16 16 C 0.20 3.48 3.46 -67.96 -0.23 3.24 16 17 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 18 N -0.72 -16.63 4.82 -53.45 -0.26 -16.89 16 19 C -0.24 -6.42 9.96 -15.06 -0.15 -6.57 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 22 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 23 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 27 C -0.12 -1.77 2.31 -91.23 -0.21 -1.98 16 28 H 0.07 0.89 7.96 -51.93 -0.41 0.47 16 29 C 0.13 2.20 6.68 -4.12 -0.03 2.17 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.25 6.64 -51.93 -0.35 0.91 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.21 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.07 0.60 8.00 -51.93 -0.42 0.18 16 35 H 0.07 0.64 6.18 -51.93 -0.32 0.32 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.38 7.98 -51.93 -0.41 0.96 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.38 9.62 6.58 -40.82 -0.27 9.35 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.09 1.76 7.22 -51.93 -0.37 1.39 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 343.07 15.07 5.17 5.17 Total: -1.00 -33.00 343.07 -9.59 -42.60 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.11 Total: 9.64 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -3.41 Total: 0.80 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -0.30 Total: -65.21 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.00 -9.59 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026432947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.564 kcal (2) G-P(sol) polarization free energy of solvation -33.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds