Wall clock time and date at job start Fri Apr 10 2020 17:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33326 * 126.10778 * 2 1 4 4 C 1.30856 * 109.68360 * 179.97438 * 3 2 1 5 5 N 1.34495 * 109.16524 * 0.02562 * 4 3 2 6 6 H 0.97007 * 126.46964 * 179.97438 * 5 4 3 7 7 C 1.36667 * 126.10818 * 180.27253 * 2 1 3 8 8 C 1.46759 * 126.84213 * 359.97438 * 7 2 1 9 9 O 1.21682 * 120.00509 * 6.40847 * 8 7 2 10 10 N 1.34775 * 119.99840 * 186.40883 * 8 7 2 11 11 C 1.49629 * 126.07484 * 5.28785 * 10 8 7 12 12 C 1.51763 * 102.38179 * 154.30321 * 11 10 8 13 13 H 1.09000 * 111.73364 * 288.25219 * 12 11 10 14 14 C 1.51851 * 122.16885 * 151.26924 * 12 11 10 15 15 C 1.56332 * 100.96435 * 207.12177 * 14 12 11 16 16 C 1.56001 * 105.77105 * 26.27310 * 15 14 12 17 17 H 1.09001 * 110.64519 * 125.64345 * 16 15 14 18 18 N 1.46493 * 110.52969 * 248.34008 * 16 15 14 19 19 C 1.36940 * 120.00132 * 269.55995 * 18 16 15 20 20 H 1.08002 * 119.99862 * 0.02562 * 19 18 16 21 21 C 1.38807 * 120.00237 * 179.97438 * 19 18 16 22 22 N 1.31625 * 120.00056 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46969 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47691 * 120.00023 * 23 21 19 26 26 H 1.48504 * 109.47311 * 240.00193 * 23 21 19 27 27 C 1.49711 * 103.98317 * 6.96827 * 16 15 14 28 28 H 1.08994 * 108.55336 * 76.80223 * 27 16 15 29 29 C 1.49293 * 126.07495 * 185.60050 * 10 8 7 30 30 H 1.09007 * 109.46822 * 89.96965 * 1 2 3 31 31 H 1.08996 * 109.46842 * 209.97020 * 1 2 3 32 32 H 1.08999 * 109.46833 * 329.97552 * 1 2 3 33 33 H 1.08002 * 125.41474 * 180.02562 * 4 3 2 34 34 H 1.08991 * 110.80247 * 272.63770 * 11 10 8 35 35 H 1.09005 * 110.80159 * 36.13562 * 11 10 8 36 36 H 1.09001 * 110.63129 * 89.58093 * 14 12 11 37 37 H 1.09002 * 112.11730 * 325.28638 * 14 12 11 38 38 H 1.08999 * 110.18801 * 267.20316 * 15 14 12 39 39 H 1.08998 * 110.19557 * 145.35206 * 15 14 12 40 40 H 0.97001 * 120.00112 * 89.56530 * 18 16 15 41 41 H 0.96996 * 119.99861 * 179.97438 * 22 21 19 42 42 H 1.09002 * 110.39414 * 292.37998 * 29 10 8 43 43 H 1.08995 * 110.39401 * 54.77553 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0772 0.0000 4 6 3.5478 0.7072 0.0006 5 7 3.6122 -0.6362 0.0004 6 1 4.4189 -1.1749 0.0003 7 6 2.3124 -1.1041 -0.0053 8 6 1.8821 -2.5072 -0.0114 9 8 0.7025 -2.7814 -0.1298 10 7 2.7935 -3.4921 0.1141 11 6 4.2553 -3.3115 0.3776 12 6 4.6288 -4.6197 1.0501 13 1 4.2261 -4.6832 2.0610 14 6 6.0242 -5.2104 0.9504 15 6 5.7158 -6.7328 1.1269 16 6 4.2477 -6.9277 0.6366 17 1 4.1979 -7.7011 -0.1298 18 7 3.3708 -7.2635 1.7611 19 6 3.1665 -8.5738 2.1025 20 1 3.6522 -9.3597 1.5430 21 6 2.3361 -8.8920 3.1683 22 7 1.7446 -7.9343 3.8505 23 14 2.0579 -10.6793 3.6345 24 1 2.8306 -11.5559 2.7180 25 1 2.5093 -10.9027 5.0314 26 1 0.6123 -11.0006 3.5241 27 6 3.8782 -5.5954 0.0624 28 1 4.3465 -5.4979 -0.9169 29 6 2.5251 -4.9569 0.0086 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8898 0.5142 33 1 4.3970 1.3745 0.0011 34 1 4.8038 -3.1829 -0.5555 35 1 4.4267 -2.4692 1.0479 36 1 6.6552 -4.8439 1.7600 37 1 6.4840 -5.0155 -0.0185 38 1 5.8025 -7.0150 2.1761 39 1 6.3975 -7.3278 0.5191 40 1 2.9349 -6.5577 2.2637 41 1 1.1640 -8.1567 4.5950 42 1 1.9132 -5.2923 0.8460 43 1 2.0343 -5.1859 -0.9373 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026432947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:14 Heat of formation + Delta-G solvation = 37.777263 kcal Electronic energy + Delta-G solvation = -25372.751867 eV Core-core repulsion = 21839.874751 eV Total energy + Delta-G solvation = -3532.877116 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.30296 -41.65753 -39.67620 -36.84777 -35.17222 -34.23315 -32.62214 -32.36881 -30.72935 -30.02499 -28.13716 -27.07502 -25.20543 -24.92730 -23.19657 -22.27644 -21.17118 -20.59406 -20.24153 -19.38952 -18.77222 -17.57359 -17.30573 -16.88072 -16.52018 -16.17203 -15.83225 -15.69566 -15.45084 -15.19930 -14.79593 -14.59701 -14.03167 -13.93801 -13.79064 -13.70305 -13.33502 -13.14251 -13.09995 -12.93151 -12.67390 -12.38159 -12.22209 -12.07515 -11.91101 -11.57405 -11.45681 -11.40763 -11.14266 -11.02781 -10.92690 -10.83048 -9.99296 -9.48407 -8.98861 -7.94215 -5.21714 0.22267 1.45634 1.46711 1.56069 1.57939 1.82173 2.03750 2.18920 2.55952 2.93126 3.39318 3.40670 3.59744 3.71183 3.83221 4.00429 4.07420 4.09415 4.18440 4.20427 4.31982 4.43376 4.54294 4.59759 4.68301 4.68406 4.77545 4.82563 4.88239 4.91450 4.98404 5.03646 5.05963 5.12639 5.21243 5.35810 5.43652 5.50921 5.53158 5.67766 6.27787 6.29190 6.34455 6.86075 6.95331 7.34232 8.12390 8.32772 9.29452 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019931 B = 0.003711 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.535375 B = 7543.351288 C = 8486.085810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.079 3.921 3 N -0.533 5.533 4 C 0.242 3.758 5 N -0.544 5.544 6 H 0.438 0.562 7 C -0.104 4.104 8 C 0.599 3.401 9 O -0.569 6.569 10 N -0.623 5.623 11 C 0.107 3.893 12 C -0.110 4.110 13 H 0.058 0.942 14 C -0.082 4.082 15 C -0.141 4.141 16 C 0.182 3.818 17 H 0.053 0.947 18 N -0.731 5.731 19 C -0.232 4.232 20 H 0.079 0.921 21 C -0.078 4.078 22 N -0.972 5.972 23 Si 0.967 3.033 24 H -0.263 1.263 25 H -0.296 1.296 26 H -0.300 1.300 27 C -0.121 4.121 28 H 0.107 0.893 29 C 0.138 3.862 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.269 0.731 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.370 0.630 41 H 0.248 0.752 42 H 0.037 0.963 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.081 16.377 -11.033 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.056 4.056 3 N -0.254 5.254 4 C -0.042 4.042 5 N -0.154 5.154 6 H 0.284 0.716 7 C -0.219 4.219 8 C 0.390 3.610 9 O -0.448 6.448 10 N -0.357 5.357 11 C -0.013 4.013 12 C -0.129 4.129 13 H 0.077 0.923 14 C -0.120 4.120 15 C -0.181 4.181 16 C 0.073 3.927 17 H 0.071 0.929 18 N -0.371 5.371 19 C -0.364 4.364 20 H 0.097 0.903 21 C -0.270 4.270 22 N -0.624 5.624 23 Si 0.797 3.203 24 H -0.187 1.187 25 H -0.223 1.223 26 H -0.227 1.227 27 C -0.141 4.141 28 H 0.125 0.875 29 C 0.017 3.983 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.285 0.715 34 H 0.135 0.865 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.061 0.939 39 H 0.094 0.906 40 H 0.203 0.797 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.144 16.850 -11.140 23.569 hybrid contribution -0.411 -2.141 1.056 2.422 sum 11.734 14.709 -10.084 21.348 Atomic orbital electron populations 1.20210 0.86903 1.02977 1.03114 1.21245 0.97355 0.87387 0.99578 1.70144 1.02047 1.30355 1.22838 1.26204 0.97648 0.82364 0.97971 1.43772 1.07340 1.09223 1.55068 0.71576 1.20503 0.86210 0.93322 1.21909 1.16865 0.84531 0.83160 0.76487 1.90811 1.17798 1.83397 1.52840 1.49771 1.09524 1.05819 1.70570 1.22307 0.79188 0.98338 1.01503 1.22649 0.98604 0.93611 0.98084 0.92336 1.21878 0.93098 0.93227 1.03764 1.23674 0.96710 0.96962 1.00752 1.20393 0.90269 0.93205 0.88810 0.92911 1.42632 1.54639 1.04206 1.35627 1.19696 1.21156 0.85717 1.09870 0.90341 1.25502 1.01028 1.00928 0.99516 1.69833 1.36390 1.32407 1.23741 0.85149 0.76906 0.80684 0.77516 1.18712 1.22326 1.22725 1.21951 0.94385 0.96683 1.01090 0.87487 1.20745 0.97883 0.78920 1.00799 0.90345 0.91611 0.89954 0.71549 0.86489 0.89150 0.90558 0.87596 0.93886 0.90586 0.79736 0.94362 0.94423 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.98 9.81 71.24 0.70 -1.28 16 2 C 0.08 2.16 7.15 41.96 0.30 2.46 16 3 N -0.53 -12.36 11.20 -187.58 -2.10 -14.46 16 4 C 0.24 3.29 13.01 180.33 2.35 5.64 16 5 N -0.54 -8.23 5.46 -188.05 -1.03 -9.26 16 6 H 0.44 3.62 5.56 -92.70 -0.52 3.10 16 7 C -0.10 -2.70 6.85 40.01 0.27 -2.42 16 8 C 0.60 19.57 7.84 86.47 0.68 20.25 16 9 O -0.57 -23.34 15.28 -4.29 -0.07 -23.41 16 10 N -0.62 -17.72 3.42 -819.25 -2.81 -20.52 16 11 C 0.11 1.90 5.02 85.36 0.43 2.33 16 12 C -0.11 -2.60 3.06 -9.86 -0.03 -2.63 16 13 H 0.06 1.90 7.73 -2.39 -0.02 1.88 16 14 C -0.08 -1.53 6.61 31.38 0.21 -1.33 16 15 C -0.14 -3.96 6.72 32.79 0.22 -3.74 16 16 C 0.18 6.38 3.46 44.98 0.16 6.53 16 17 H 0.05 1.88 8.09 -2.39 -0.02 1.86 16 18 N -0.73 -35.18 4.82 -323.02 -1.56 -36.74 16 19 C -0.23 -12.57 9.96 84.03 0.84 -11.74 16 20 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 21 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 22 N -0.97 -60.46 13.06 21.65 0.28 -60.18 16 23 Si 0.97 46.41 29.55 68.60 2.03 48.44 16 24 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 26 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 27 C -0.12 -3.41 2.31 -11.19 -0.03 -3.43 16 28 H 0.11 2.29 7.96 -2.39 -0.02 2.27 16 29 C 0.14 4.67 6.68 84.78 0.57 5.24 16 30 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.07 2.03 6.64 -2.39 -0.02 2.02 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.27 0.37 8.06 -2.91 -0.02 0.35 16 34 H 0.12 1.16 8.00 -2.39 -0.02 1.14 16 35 H 0.09 1.27 6.18 -2.38 -0.01 1.25 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.04 1.51 7.98 -2.39 -0.02 1.49 16 39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.37 19.77 6.58 -92.71 -0.61 19.16 16 41 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 42 H 0.04 1.64 7.22 -2.39 -0.02 1.62 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -79.64 343.07 1.79 -77.84 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: -0.08 Total: 26.42 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 7.12 Total: 11.86 kcal Atomic # 7 Polarization: -133.95 SS G_CDS: -7.21 Total: -141.16 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.07 Total: -23.41 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -79.64 1.79 -77.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026432947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.620 kcal (2) G-P(sol) polarization free energy of solvation -79.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds