Wall clock time and date at job start Fri Apr 10 2020 17:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38821 * 120.41847 * 2 1 4 4 C 1.38778 * 118.50486 * 180.02562 * 3 2 1 5 5 N 1.32123 * 119.16618 * 359.97438 * 4 3 2 6 6 C 1.32452 * 120.77116 * 0.02562 * 5 4 3 7 7 C 1.48535 * 119.18756 * 179.97438 * 6 5 4 8 8 O 1.21473 * 120.00047 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00022 * 359.72255 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27271 * 9 7 6 11 11 C 1.52997 * 109.47288 * 275.00460 * 10 9 7 12 12 C 1.52997 * 109.47394 * 299.99753 * 11 10 9 13 13 C 1.53005 * 109.46837 * 300.00212 * 12 11 10 14 14 N 1.46504 * 109.46805 * 179.97438 * 13 12 11 15 15 C 1.36937 * 119.99818 * 84.99985 * 14 13 12 16 16 H 1.08001 * 120.00132 * 359.97438 * 15 14 13 17 17 C 1.38815 * 119.99995 * 179.97438 * 15 14 13 18 18 N 1.31614 * 119.99726 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99966 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46866 * 90.00462 * 19 17 15 21 21 H 1.48497 * 109.47169 * 210.00072 * 19 17 15 22 22 H 1.48497 * 109.47589 * 330.00800 * 19 17 15 23 23 C 1.52997 * 109.47302 * 59.99731 * 13 12 11 24 24 C 1.52995 * 109.47530 * 155.00300 * 10 9 7 25 25 N 1.32102 * 120.41637 * 180.28787 * 2 1 3 26 26 H 1.09005 * 109.46690 * 90.00386 * 1 2 3 27 27 H 1.08994 * 109.47592 * 210.00390 * 1 2 3 28 28 H 1.09003 * 109.47502 * 330.01178 * 1 2 3 29 29 H 1.07996 * 120.74550 * 0.03750 * 3 2 1 30 30 H 1.07994 * 120.42056 * 180.02562 * 4 3 2 31 31 H 0.97001 * 119.99727 * 0.28168 * 9 7 6 32 32 H 1.09001 * 109.46948 * 35.00281 * 10 9 7 33 33 H 1.09006 * 109.47495 * 60.00048 * 11 10 9 34 34 H 1.08998 * 109.47338 * 179.97438 * 11 10 9 35 35 H 1.08998 * 109.47567 * 179.97438 * 12 11 10 36 36 H 1.08998 * 109.46943 * 59.99679 * 12 11 10 37 37 H 1.08998 * 109.46918 * 299.99482 * 13 12 11 38 38 H 0.96995 * 119.99891 * 264.99692 * 14 13 12 39 39 H 0.97007 * 120.00173 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.47024 * 179.97438 * 23 13 12 41 41 H 1.09007 * 109.47320 * 59.99736 * 23 13 12 42 42 H 1.08993 * 109.47878 * 180.02562 * 24 10 9 43 43 H 1.09012 * 109.46847 * 300.00681 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1971 0.0000 4 6 3.5969 1.1508 -0.0005 5 7 4.2019 -0.0238 -0.0005 6 6 3.5005 -1.1473 -0.0005 7 6 4.2168 -2.4485 -0.0011 8 8 3.5882 -3.4879 -0.0015 9 7 5.5643 -2.4759 -0.0072 10 6 6.2709 -3.7592 -0.0138 11 6 6.4132 -4.2705 1.4211 12 6 7.2060 -3.2561 2.2478 13 6 8.5945 -3.0707 1.6323 14 7 9.3535 -2.0989 2.4235 15 6 10.0439 -2.5091 3.5327 16 1 10.0286 -3.5488 3.8245 17 6 10.7635 -1.5884 4.2821 18 7 10.7817 -0.3213 3.9268 19 14 11.7047 -2.1478 5.7955 20 1 13.0843 -2.5351 5.4053 21 1 11.7622 -1.0383 6.7808 22 1 11.0163 -3.3147 6.4035 23 6 8.4522 -2.5594 0.1974 24 6 7.6593 -3.5739 -0.6292 25 7 2.1758 -1.1392 -0.0057 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8901 0.5136 29 1 1.6890 2.1432 0.0006 30 1 4.1745 2.0633 -0.0001 31 1 6.0663 -1.6458 -0.0072 32 1 5.7061 -4.4819 -0.6027 33 1 5.4240 -4.4026 1.8596 34 1 6.9385 -5.2255 1.4162 35 1 7.3070 -3.6201 3.2702 36 1 6.6804 -2.3013 2.2527 37 1 9.1202 -4.0255 1.6274 38 1 9.3669 -1.1651 2.1617 39 1 11.2842 0.3222 4.4507 40 1 9.4414 -2.4269 -0.2409 41 1 7.9265 -1.6045 0.2023 42 1 8.1849 -4.5287 -0.6345 43 1 7.5579 -3.2095 -1.6516 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026485389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:21 Heat of formation + Delta-G solvation = 15.057474 kcal Electronic energy + Delta-G solvation = -24743.299319 eV Core-core repulsion = 21209.436999 eV Total energy + Delta-G solvation = -3533.862320 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.49210 -39.81367 -37.82320 -34.98070 -34.52885 -32.98760 -32.58880 -30.70274 -30.40097 -28.92606 -27.69009 -25.60656 -23.61431 -23.41745 -22.20652 -21.49663 -20.77485 -18.83722 -18.23591 -17.89632 -17.01435 -16.19443 -15.86605 -15.51781 -15.33723 -15.00695 -14.67698 -14.21562 -13.93613 -13.60056 -13.56097 -13.46764 -13.24336 -13.00844 -12.72304 -12.34741 -12.21041 -11.83467 -11.60480 -11.48513 -10.99718 -10.90216 -10.85442 -10.75821 -10.37919 -10.15922 -10.10733 -10.03217 -9.89476 -9.66709 -9.58161 -9.54112 -8.93208 -8.79637 -6.91536 -5.73881 -3.01775 0.21946 0.76119 2.56951 2.73984 3.44892 3.50375 3.51734 3.65184 3.69598 3.99114 4.14365 4.57494 4.60882 4.68475 4.90126 5.00890 5.07349 5.10341 5.13498 5.17578 5.37865 5.53670 5.54198 5.59370 5.72952 5.78862 5.90603 5.94933 5.99148 6.05508 6.12234 6.30603 6.39874 6.51490 6.56332 6.64562 6.68295 6.79016 7.02724 7.18350 7.40608 7.73310 7.76749 8.18068 8.45195 9.56187 10.15119 10.49633 11.48927 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017031 B = 0.003370 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.710825 B = 8305.725175 C = 9185.456414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.169 3.831 3 C -0.213 4.213 4 C 0.151 3.849 5 N -0.495 5.495 6 C 0.291 3.709 7 C 0.583 3.417 8 O -0.511 6.511 9 N -0.692 5.692 10 C 0.147 3.853 11 C -0.129 4.129 12 C -0.133 4.133 13 C 0.178 3.822 14 N -0.725 5.725 15 C -0.235 4.235 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.905 3.095 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.126 4.126 24 C -0.122 4.122 25 N -0.471 5.471 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.153 0.847 30 H 0.178 0.822 31 H 0.413 0.587 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.383 0.617 39 H 0.254 0.746 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.873 2.521 -12.101 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.022 3.978 3 C -0.235 4.235 4 C -0.015 4.015 5 N -0.212 5.212 6 C 0.021 3.979 7 C 0.364 3.636 8 O -0.384 6.384 9 N -0.346 5.346 10 C 0.044 3.956 11 C -0.168 4.168 12 C -0.174 4.174 13 C 0.068 3.932 14 N -0.365 5.365 15 C -0.366 4.366 16 H 0.087 0.913 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.736 3.264 20 H -0.218 1.218 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.165 4.165 24 C -0.160 4.160 25 N -0.187 5.187 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.171 0.829 30 H 0.195 0.805 31 H 0.251 0.749 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.216 0.784 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.725 0.761 -11.958 21.395 hybrid contribution 0.319 1.537 0.947 1.833 sum -17.406 2.298 -11.011 20.724 Atomic orbital electron populations 1.20812 0.87277 1.04401 1.03897 1.21884 0.97969 0.87829 0.90074 1.23021 0.96694 1.00697 1.03067 1.23349 0.92198 0.96120 0.89830 1.68342 1.41569 0.98850 1.12475 1.22980 0.87420 0.93158 0.94372 1.17231 0.82565 0.85820 0.78018 1.90785 1.66961 1.32070 1.48602 1.45961 1.04992 1.11080 1.72565 1.21090 0.92581 0.84370 0.97589 1.21944 1.00634 0.99601 0.94662 1.22229 0.97792 0.97966 0.99393 1.20222 0.90615 0.93620 0.88696 1.42425 1.57252 1.06986 1.29862 1.19248 1.21889 0.93615 1.01861 0.91253 1.24723 1.01284 0.95509 0.99580 1.69659 1.46385 1.01111 1.41109 0.86220 0.79988 0.77281 0.82911 1.21787 1.21868 1.20817 1.21829 0.99912 0.97972 0.96763 1.21798 0.94140 1.01229 0.98830 1.68095 1.08651 1.30433 1.11562 0.89462 0.89571 0.89847 0.82927 0.80506 0.74904 0.89626 0.92225 0.91117 0.92117 0.92799 0.93513 0.78375 0.93623 0.91378 0.92422 0.90132 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.22 36.01 0.37 -0.29 16 2 C 0.17 1.69 6.82 -82.26 -0.56 1.13 16 3 C -0.21 -1.65 9.87 -39.17 -0.39 -2.04 16 4 C 0.15 1.40 11.30 -17.23 -0.19 1.20 16 5 N -0.50 -6.38 9.58 -11.12 -0.11 -6.49 16 6 C 0.29 4.29 7.60 -157.07 -1.19 3.10 16 7 C 0.58 9.35 7.82 -12.01 -0.09 9.26 16 8 O -0.51 -9.51 16.53 5.39 0.09 -9.42 16 9 N -0.69 -9.94 4.22 -54.53 -0.23 -10.17 16 10 C 0.15 2.03 2.78 -67.94 -0.19 1.84 16 11 C -0.13 -1.97 5.60 -26.73 -0.15 -2.12 16 12 C -0.13 -2.44 5.34 -26.73 -0.14 -2.59 16 13 C 0.18 3.45 2.77 -67.93 -0.19 3.26 16 14 N -0.73 -17.96 5.12 -53.42 -0.27 -18.24 16 15 C -0.23 -6.51 9.93 -15.06 -0.15 -6.66 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 18 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 19 Si 0.90 22.53 29.55 -169.99 -5.02 17.50 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.13 -1.97 5.22 -26.73 -0.14 -2.11 16 24 C -0.12 -1.53 5.61 -26.73 -0.15 -1.68 16 25 N -0.47 -6.63 10.07 -7.37 -0.07 -6.71 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.31 8.10 -51.93 -0.42 -0.11 16 29 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 30 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.41 5.78 6.17 -40.82 -0.25 5.52 16 32 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.05 1.04 7.60 -51.93 -0.39 0.64 16 37 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 38 H 0.38 10.08 7.80 -40.82 -0.32 9.76 16 39 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.90 6.51 -51.93 -0.34 0.56 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 LS Contribution 355.04 15.07 5.35 5.35 Total: -1.00 -34.32 355.04 -9.12 -43.44 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.31 Total: 10.40 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -3.27 Total: 1.78 kcal Atomic # 7 Polarization: -69.09 SS G_CDS: 0.04 Total: -69.05 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.32 -9.12 -43.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026485389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.493 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds