Wall clock time and date at job start Fri Apr 10 2020 17:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00323 * 2 1 4 4 H 1.48495 * 109.47219 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46865 * 300.00142 * 3 2 1 6 6 H 1.48500 * 109.46946 * 59.99831 * 3 2 1 7 7 C 1.38817 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99811 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99913 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99562 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47131 * 204.99994 * 10 9 7 12 12 C 1.52997 * 109.47469 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.46977 * 59.99917 * 12 11 10 14 14 N 1.46495 * 109.47111 * 60.00399 * 13 12 11 15 15 C 1.34775 * 120.00098 * 155.00195 * 14 13 12 16 16 O 1.21282 * 120.00165 * 359.97438 * 15 14 13 17 17 C 1.50706 * 120.00286 * 179.97438 * 15 14 13 18 18 C 1.50698 * 109.47472 * 179.97438 * 17 15 14 19 19 C 1.38597 * 120.79551 * 89.99578 * 18 17 15 20 20 N 1.32337 * 119.09979 * 179.72102 * 19 18 17 21 21 C 1.31795 * 120.82153 * 0.28399 * 20 19 18 22 22 N 1.31796 * 121.75342 * 0.02562 * 21 20 19 23 23 C 1.32339 * 120.81472 * 359.96878 * 22 21 20 24 24 C 1.52998 * 109.47184 * 299.99800 * 13 12 11 25 25 C 1.52998 * 109.47425 * 85.00268 * 10 9 7 26 26 H 0.97009 * 120.00143 * 0.02562 * 1 2 3 27 27 H 0.96999 * 120.00306 * 0.02562 * 9 7 2 28 28 H 1.09008 * 109.47197 * 324.99589 * 10 9 7 29 29 H 1.09008 * 109.47093 * 59.99702 * 11 10 9 30 30 H 1.09005 * 109.47045 * 300.00302 * 11 10 9 31 31 H 1.09005 * 109.47220 * 300.00178 * 12 11 10 32 32 H 1.08995 * 109.47143 * 180.02562 * 12 11 10 33 33 H 1.09006 * 109.46988 * 179.97438 * 13 12 11 34 34 H 0.97002 * 119.99865 * 334.99340 * 14 13 12 35 35 H 1.09001 * 109.46792 * 59.99741 * 17 15 14 36 36 H 1.08997 * 109.46905 * 300.00353 * 17 15 14 37 37 H 1.08002 * 120.45366 * 0.02562 * 19 18 17 38 38 H 1.07992 * 119.12500 * 179.97438 * 21 20 19 39 39 H 1.08007 * 120.44447 * 179.97438 * 23 22 21 40 40 H 1.08998 * 109.46937 * 179.97438 * 24 13 12 41 41 H 1.08996 * 109.47407 * 300.00172 * 24 13 12 42 42 H 1.09006 * 109.46649 * 299.99376 * 25 10 9 43 43 H 1.08996 * 109.47143 * 59.99636 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.1812 -4.7524 -0.6082 12 6 1.9459 -6.0776 -0.6064 13 6 2.3081 -6.4554 0.8312 14 7 1.0833 -6.5975 1.6222 15 6 1.0761 -7.3816 2.7184 16 8 2.0835 -7.9700 3.0497 17 6 -0.1838 -7.5273 3.5324 18 6 0.0731 -8.4515 4.6947 19 6 0.5183 -7.9562 5.9102 20 7 0.7278 -8.7974 6.9101 21 6 0.5236 -10.0906 6.7586 22 7 0.1065 -10.5978 5.6159 23 6 -0.1242 -9.8178 4.5720 24 6 3.1849 -5.3599 1.4410 25 6 2.4207 -4.0350 1.4391 26 1 -0.4851 0.8401 -0.0004 27 1 0.3554 -2.3881 -0.0002 28 1 2.9691 -3.5508 -0.5872 29 1 0.9227 -4.4830 -1.6323 30 1 0.2700 -4.8584 -0.0194 31 1 2.8573 -5.9719 -1.1950 32 1 1.3215 -6.8580 -1.0413 33 1 2.8525 -7.3998 0.8325 34 1 0.2774 -6.1271 1.3570 35 1 -0.9745 -7.9417 2.9070 36 1 -0.4903 -6.5501 3.9055 37 1 0.6872 -6.8976 6.0411 38 1 0.7037 -10.7524 7.5928 39 1 -0.4655 -10.2399 3.6382 40 1 3.4426 -5.6289 2.4654 41 1 4.0963 -5.2542 0.8525 42 1 3.0454 -3.2545 1.8735 43 1 1.5095 -4.1410 2.0279 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026485765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:25 Heat of formation + Delta-G solvation = 8.191510 kcal Electronic energy + Delta-G solvation = -24501.106270 eV Core-core repulsion = 20966.946220 eV Total energy + Delta-G solvation = -3534.160050 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.32517 -40.08881 -38.06028 -34.74295 -33.98156 -33.90869 -32.79914 -30.85023 -30.50511 -28.72235 -27.37223 -24.83577 -23.94293 -23.44291 -22.28399 -21.17295 -20.79302 -18.93876 -17.89698 -17.85187 -17.42049 -17.12507 -15.89673 -15.53785 -15.16790 -14.92405 -14.51660 -14.31170 -13.98479 -13.88249 -13.80417 -13.64876 -13.48968 -13.23768 -12.46851 -12.38859 -12.25978 -11.92814 -11.68766 -11.19529 -11.05825 -11.02909 -10.92201 -10.86950 -10.45509 -10.22749 -10.15331 -10.14573 -9.76352 -9.62233 -9.56886 -9.46149 -9.02018 -8.87854 -6.99530 -5.81256 -3.09482 0.62140 0.86087 2.53051 3.09747 3.39947 3.46348 3.47975 3.60861 3.90285 3.98764 4.27970 4.36408 4.49420 4.54606 4.69751 4.93476 5.01172 5.06093 5.07442 5.19951 5.27077 5.45632 5.51079 5.60835 5.64299 5.69292 5.81439 5.86868 5.95661 6.02946 6.13224 6.21030 6.29960 6.43511 6.46184 6.58989 6.69264 6.70161 6.92932 7.07576 7.45716 7.67359 7.82926 8.14680 8.37795 9.49097 10.06785 10.41051 11.41514 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021655 B = 0.002848 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.696338 B = 9830.729424 C =10446.351363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 C -0.124 4.124 12 C -0.122 4.122 13 C 0.148 3.852 14 N -0.715 5.715 15 C 0.514 3.486 16 O -0.541 6.541 17 C -0.098 4.098 18 C -0.166 4.166 19 C 0.163 3.837 20 N -0.519 5.519 21 C 0.287 3.713 22 N -0.521 5.521 23 C 0.160 3.840 24 C -0.128 4.128 25 C -0.131 4.131 26 H 0.254 0.746 27 H 0.382 0.618 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.403 0.597 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.167 0.833 38 H 0.195 0.805 39 H 0.165 0.835 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 -18.902 5.701 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 C -0.163 4.163 12 C -0.161 4.161 13 C 0.044 3.956 14 N -0.367 5.367 15 C 0.300 3.700 16 O -0.418 6.418 17 C -0.139 4.139 18 C -0.171 4.171 19 C -0.003 4.003 20 N -0.232 5.232 21 C 0.000 4.000 22 N -0.234 5.234 23 C -0.005 4.005 24 C -0.168 4.168 25 C -0.172 4.172 26 H 0.064 0.936 27 H 0.216 0.784 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.239 0.761 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.184 0.816 38 H 0.211 0.789 39 H 0.182 0.818 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.844 -19.787 6.691 20.904 hybrid contribution -0.373 1.876 -0.776 2.064 sum -1.218 -17.911 5.915 18.901 Atomic orbital electron populations 1.69661 1.05083 1.25507 1.57980 1.24728 0.95511 0.97661 1.03126 0.86151 0.78837 0.84244 0.77188 1.20576 1.21889 1.21905 1.19280 0.91005 0.84139 1.42302 0.91204 1.42423 1.05689 0.99832 1.88610 1.20228 0.94339 0.85850 0.92840 1.21816 0.98577 0.94257 1.01627 1.21797 1.01548 0.97845 0.94890 1.20979 0.85255 0.99030 0.90311 1.46134 1.14958 1.48239 1.27387 1.20359 0.89715 0.78916 0.81016 1.90725 1.34902 1.46967 1.69231 1.20565 0.97439 1.01098 0.94819 1.21084 1.02565 0.96470 0.96941 1.23137 0.89109 1.00426 0.87647 1.68438 1.16292 1.05111 1.33332 1.24961 0.90622 0.89866 0.94570 1.68424 1.13442 1.40667 1.00832 1.23065 0.91037 0.89379 0.97066 1.21915 0.98428 0.95666 1.00760 1.22203 0.99565 0.94825 1.00591 0.93605 0.78428 0.93576 0.91453 0.92634 0.90390 0.91797 0.90024 0.76139 0.87252 0.86983 0.81604 0.78868 0.81790 0.92363 0.91441 0.92167 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.38 13.06 55.49 0.72 -26.65 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.90 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.73 -17.06 5.12 -53.42 -0.27 -17.33 16 10 C 0.18 3.19 2.77 -67.93 -0.19 3.00 16 11 C -0.12 -1.73 5.22 -26.73 -0.14 -1.87 16 12 C -0.12 -1.36 5.61 -26.73 -0.15 -1.51 16 13 C 0.15 1.76 2.78 -67.94 -0.19 1.57 16 14 N -0.71 -7.51 4.23 -53.81 -0.23 -7.74 16 15 C 0.51 5.72 7.79 -10.98 -0.09 5.64 16 16 O -0.54 -8.23 15.70 5.56 0.09 -8.14 16 17 C -0.10 -0.74 5.88 -29.03 -0.17 -0.91 16 18 C -0.17 -1.58 4.41 -104.36 -0.46 -2.04 16 19 C 0.16 1.70 11.01 -17.20 -0.19 1.51 16 20 N -0.52 -5.94 10.44 -14.58 -0.15 -6.09 16 21 C 0.29 2.97 12.29 -92.15 -1.13 1.83 16 22 N -0.52 -5.71 10.44 -14.58 -0.15 -5.86 16 23 C 0.16 1.56 11.01 -17.20 -0.19 1.37 16 24 C -0.13 -1.78 5.60 -26.76 -0.15 -1.93 16 25 C -0.13 -2.18 5.34 -26.76 -0.14 -2.32 16 26 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.38 9.52 7.80 -40.82 -0.32 9.21 16 28 H 0.05 0.88 8.08 -51.92 -0.42 0.46 16 29 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 30 H 0.06 0.72 6.50 -51.93 -0.34 0.38 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.02 7.58 -51.93 -0.39 0.63 16 34 H 0.40 3.66 6.87 -40.82 -0.28 3.38 16 35 H 0.11 0.53 8.10 -51.93 -0.42 0.11 16 36 H 0.11 0.68 8.10 -51.93 -0.42 0.25 16 37 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.19 1.36 8.06 -52.49 -0.42 0.93 16 39 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.88 7.60 -51.93 -0.39 0.49 16 LS Contribution 354.79 15.07 5.35 5.35 Total: -1.00 -33.68 354.79 -9.44 -43.12 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.34 Total: 9.00 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -3.43 Total: -2.62 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: -0.08 Total: -63.68 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.09 Total: -8.14 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.68 -9.44 -43.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026485765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.314 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds