Wall clock time and date at job start Fri Apr 10 2020 17:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38040 * 126.29203 * 2 1 4 4 C 1.47430 * 126.41689 * 359.97438 * 3 2 1 5 5 O 1.21607 * 119.99403 * 47.56825 * 4 3 2 6 6 N 1.34772 * 120.00641 * 227.57499 * 4 3 2 7 7 C 1.47167 * 120.70684 * 356.06065 * 6 4 3 8 8 C 1.55887 * 107.94699 * 132.41090 * 7 6 4 9 9 H 1.09004 * 112.45617 * 181.84871 * 8 7 6 10 10 C 1.54545 * 108.44742 * 307.13893 * 8 7 6 11 11 C 1.53734 * 104.95839 * 88.28695 * 10 8 7 12 12 C 1.54548 * 104.94942 * 359.97438 * 11 10 8 13 13 H 1.09008 * 112.17717 * 146.28566 * 12 11 10 14 14 C 1.47156 * 120.71471 * 176.04544 * 6 4 3 15 15 N 1.48310 * 106.17628 * 58.78709 * 8 7 6 16 16 C 1.36932 * 128.07785 * 106.44241 * 15 8 7 17 17 H 1.08007 * 119.99865 * 203.91092 * 16 15 8 18 18 C 1.38809 * 120.00359 * 23.90746 * 16 15 8 19 19 N 1.31615 * 120.00230 * 201.12978 * 18 16 15 20 20 Si 1.86796 * 119.99883 * 21.12512 * 18 16 15 21 21 H 1.48503 * 109.47358 * 267.19893 * 20 18 16 22 22 H 1.48504 * 109.46876 * 27.19546 * 20 18 16 23 23 H 1.48499 * 109.47469 * 147.19711 * 20 18 16 24 24 C 1.41296 * 107.17163 * 180.26007 * 3 2 1 25 25 N 1.30447 * 108.01805 * 359.58869 * 24 3 2 26 26 N 1.34264 * 126.29161 * 180.02562 * 2 1 3 27 27 C 1.46497 * 125.75176 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.46610 * 90.00307 * 1 2 3 29 29 H 1.09005 * 109.46925 * 210.00292 * 1 2 3 30 30 H 1.08997 * 109.47139 * 330.00466 * 1 2 3 31 31 H 1.08995 * 109.75717 * 252.37171 * 7 6 4 32 32 H 1.09001 * 109.74703 * 13.05997 * 7 6 4 33 33 H 1.08999 * 110.36433 * 207.00881 * 10 8 7 34 34 H 1.09004 * 110.36307 * 329.20971 * 10 8 7 35 35 H 1.09003 * 110.41404 * 241.07341 * 11 10 8 36 36 H 1.08997 * 110.20577 * 118.81883 * 11 10 8 37 37 H 1.09001 * 109.74949 * 107.62653 * 14 6 4 38 38 H 1.09004 * 109.78820 * 346.92429 * 14 6 4 39 39 H 0.97007 * 120.00067 * 180.02562 * 19 18 16 40 40 H 1.07997 * 125.98812 * 179.73711 * 24 3 2 41 41 H 1.09001 * 109.47467 * 89.99930 * 27 26 2 42 42 H 1.09004 * 109.46655 * 209.99990 * 27 26 2 43 43 H 1.09002 * 109.47249 * 329.99486 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 1.0264 2.8897 0.7764 6 7 2.4376 3.3976 -0.8621 7 6 3.5382 2.9886 -1.7493 8 6 3.2034 3.4830 -3.1893 9 1 3.9603 3.1894 -3.9168 10 6 1.7908 2.9798 -3.5630 11 6 0.8339 4.0711 -3.0562 12 6 1.7501 5.1402 -2.4189 13 1 1.3577 6.1488 -2.5490 14 6 1.9523 4.7849 -0.9360 15 7 3.0566 4.9559 -3.0968 16 6 3.9223 5.9203 -3.5389 17 1 3.9082 6.9040 -3.0932 18 6 4.8181 5.6337 -4.5598 19 7 5.9002 6.3675 -4.7111 20 14 4.4878 4.2065 -5.7188 21 1 5.1588 2.9856 -5.2045 22 1 3.0247 3.9679 -5.8057 23 1 5.0174 4.5314 -7.0676 24 6 3.6591 0.6498 -0.0061 25 7 3.6340 -0.6544 -0.0006 26 7 2.3017 -1.0822 -0.0005 27 6 1.8501 -2.4758 -0.0006 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 4.4720 3.4357 -1.4082 32 1 3.6280 1.9023 -1.7481 33 1 1.7002 2.8719 -4.6438 34 1 1.5833 2.0305 -3.0691 35 1 0.1524 3.6626 -2.3100 36 1 0.2747 4.4978 -3.8888 37 1 2.6877 5.4565 -0.4931 38 1 1.0052 4.8733 -0.4036 39 1 6.5260 6.1674 -5.4248 40 1 4.5449 1.2676 -0.0117 41 1 1.7377 -2.8213 -1.0282 42 1 2.5850 -3.0959 0.5129 43 1 0.8916 -2.5472 0.5137 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029214026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:43 Heat of formation + Delta-G solvation = 93.322033 kcal Electronic energy + Delta-G solvation = -26485.870234 eV Core-core repulsion = 22955.401720 eV Total energy + Delta-G solvation = -3530.468514 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.54605 -39.90533 -37.79484 -34.16814 -33.49938 -32.44294 -32.10134 -30.88379 -29.94955 -27.87218 -26.97730 -26.11553 -24.22037 -23.61638 -22.02345 -20.69815 -20.28115 -19.34088 -18.52122 -17.49000 -16.38624 -16.17216 -16.03952 -15.50968 -15.34475 -14.86662 -14.35200 -13.83300 -13.60667 -13.47941 -13.39917 -13.29981 -13.03013 -12.92353 -12.73348 -12.64078 -12.30467 -12.23477 -11.97211 -11.82371 -11.32613 -11.04685 -10.91772 -10.80665 -10.56046 -10.28210 -9.92191 -9.83791 -9.54485 -9.48889 -9.36120 -8.76391 -8.54027 -8.20028 -7.06195 -6.01209 -3.33714 1.57523 2.25706 2.31892 3.22462 3.24216 3.42617 3.45081 3.59666 4.32809 4.44800 4.46915 4.73857 4.79606 4.84027 4.93289 5.08091 5.15322 5.23774 5.31849 5.35819 5.44178 5.50430 5.58304 5.59655 5.70283 5.71602 5.84700 5.94760 6.06466 6.21315 6.23178 6.31087 6.37654 6.40747 6.41132 6.50801 6.67140 6.76309 6.77138 7.04207 7.51948 7.60528 7.89572 8.27145 8.58657 8.73447 9.60293 10.18306 11.15023 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019224 B = 0.005189 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.171559 B = 5394.799118 C = 5926.701395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.137 3.863 3 C -0.280 4.280 4 C 0.593 3.407 5 O -0.559 6.559 6 N -0.584 5.584 7 C 0.093 3.907 8 C 0.123 3.877 9 H 0.083 0.917 10 C -0.127 4.127 11 C -0.124 4.124 12 C 0.136 3.864 13 H 0.087 0.913 14 C 0.106 3.894 15 N -0.596 5.596 16 C -0.237 4.237 17 H 0.093 0.907 18 C 0.027 3.973 19 N -0.905 5.905 20 Si 0.872 3.128 21 H -0.286 1.286 22 H -0.264 1.264 23 H -0.302 1.302 24 C 0.084 3.916 25 N -0.300 5.300 26 N -0.367 5.367 27 C 0.098 3.902 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.264 0.736 40 H 0.191 0.809 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.521 -15.569 7.606 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.006 3.994 3 C -0.295 4.295 4 C 0.380 3.620 5 O -0.439 6.439 6 N -0.315 5.315 7 C -0.032 4.032 8 C 0.016 3.984 9 H 0.101 0.899 10 C -0.166 4.166 11 C -0.163 4.163 12 C 0.029 3.971 13 H 0.105 0.895 14 C -0.018 4.018 15 N -0.319 5.319 16 C -0.364 4.364 17 H 0.110 0.890 18 C -0.172 4.172 19 N -0.548 5.548 20 Si 0.703 3.297 21 H -0.215 1.215 22 H -0.189 1.189 23 H -0.230 1.230 24 C -0.103 4.103 25 N -0.120 5.120 26 N -0.148 5.148 27 C -0.043 4.043 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.208 0.792 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.042 -16.404 7.853 20.775 hybrid contribution -0.236 -0.203 -0.904 0.956 sum -10.278 -16.608 6.949 20.730 Atomic orbital electron populations 1.20615 0.86562 1.04816 1.03757 1.21319 0.94559 0.86270 0.97217 1.19999 0.93074 0.93773 1.22630 1.17244 0.81076 0.83708 0.79930 1.90702 1.33822 1.79326 1.40089 1.47867 1.35450 1.11149 1.37043 1.22987 0.89314 0.99041 0.91837 1.22587 0.95710 0.86388 0.93722 0.89932 1.22431 0.96114 0.97769 1.00277 1.22369 0.97428 0.96880 0.99647 1.22040 0.87029 0.97651 0.90410 0.89452 1.22325 0.99673 0.81092 0.98718 1.45517 1.17619 1.00024 1.68706 1.18622 1.10472 0.93726 1.13543 0.88989 1.25085 0.96735 0.97623 0.97790 1.69814 1.10140 1.41531 1.33316 0.87021 0.79079 0.82232 0.81322 1.21483 1.18945 1.23032 1.24078 0.97306 0.91710 0.97167 1.77171 0.95866 1.13249 1.25683 1.48256 1.04087 1.06108 1.56315 1.21900 1.01100 0.77633 1.03641 0.89824 0.90933 0.88046 0.90774 0.90646 0.92201 0.92460 0.92250 0.92233 0.91437 0.90021 0.92630 0.79243 0.90430 0.89022 0.89391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 9.93 36.01 0.36 -0.60 16 2 C 0.14 1.75 7.01 -81.60 -0.57 1.18 16 3 C -0.28 -4.23 5.15 -105.06 -0.54 -4.77 16 4 C 0.59 10.14 7.36 -12.52 -0.09 10.05 16 5 O -0.56 -10.72 15.51 5.27 0.08 -10.64 16 6 N -0.58 -10.14 2.29 -171.57 -0.39 -10.54 16 7 C 0.09 1.66 5.23 -2.14 -0.01 1.65 16 8 C 0.12 2.52 2.96 -64.58 -0.19 2.33 16 9 H 0.08 1.85 3.29 -51.93 -0.17 1.68 16 10 C -0.13 -2.28 6.01 -25.54 -0.15 -2.43 16 11 C -0.12 -2.11 6.18 -25.54 -0.16 -2.27 16 12 C 0.14 2.56 4.27 -65.68 -0.28 2.28 16 13 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 14 C 0.11 1.87 5.90 -3.25 -0.02 1.85 16 15 N -0.60 -13.46 2.50 -151.42 -0.38 -13.83 16 16 C -0.24 -6.35 10.72 -15.06 -0.16 -6.51 16 17 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 18 C 0.03 0.75 5.46 -17.43 -0.10 0.66 16 19 N -0.91 -27.03 13.97 55.49 0.78 -26.26 16 20 Si 0.87 21.48 24.76 -169.99 -4.21 17.28 16 21 H -0.29 -6.85 6.64 56.52 0.38 -6.47 16 22 H -0.26 -6.29 5.74 56.52 0.32 -5.97 16 23 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 24 C 0.08 1.21 9.64 -16.98 -0.16 1.04 16 25 N -0.30 -4.25 12.50 30.86 0.39 -3.87 16 26 N -0.37 -4.35 3.98 -63.34 -0.25 -4.60 16 27 C 0.10 0.67 11.24 59.85 0.67 1.34 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.48 7.05 -51.93 -0.37 0.12 16 30 H 0.10 1.16 7.01 -51.93 -0.36 0.80 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.08 1.21 4.85 -51.93 -0.25 0.96 16 33 H 0.06 1.11 7.04 -51.93 -0.37 0.74 16 34 H 0.06 0.94 7.88 -51.93 -0.41 0.53 16 35 H 0.06 0.94 7.86 -51.93 -0.41 0.53 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.08 1.38 7.15 -51.93 -0.37 1.01 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.19 2.41 7.51 -52.49 -0.39 2.01 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.38 7.02 -51.93 -0.36 0.02 16 LS Contribution 332.06 15.07 5.00 5.00 Total: -1.00 -33.17 332.06 -6.48 -39.64 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.09 Total: 2.02 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -1.41 Total: 5.79 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.14 Total: -59.10 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.08 Total: -10.64 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.21 Total: 17.28 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.17 -6.48 -39.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029214026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.967 kcal (2) G-P(sol) polarization free energy of solvation -33.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds