Wall clock time and date at job start Fri Apr 10 2020 17:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38040 * 126.29203 * 2 1 4 4 C 1.47430 * 126.41689 * 359.97438 * 3 2 1 5 5 O 1.21607 * 119.99403 * 47.56825 * 4 3 2 6 6 N 1.34772 * 120.00641 * 227.57499 * 4 3 2 7 7 C 1.47167 * 120.70684 * 356.06065 * 6 4 3 8 8 C 1.55887 * 107.94699 * 132.41090 * 7 6 4 9 9 H 1.09004 * 112.45617 * 181.84871 * 8 7 6 10 10 C 1.54545 * 108.44742 * 307.13893 * 8 7 6 11 11 C 1.53734 * 104.95839 * 88.28695 * 10 8 7 12 12 C 1.54548 * 104.94942 * 359.97438 * 11 10 8 13 13 H 1.09008 * 112.17717 * 146.28566 * 12 11 10 14 14 C 1.47156 * 120.71471 * 176.04544 * 6 4 3 15 15 N 1.48310 * 106.17628 * 58.78709 * 8 7 6 16 16 C 1.36932 * 128.07785 * 106.44241 * 15 8 7 17 17 H 1.08007 * 119.99865 * 203.91092 * 16 15 8 18 18 C 1.38809 * 120.00359 * 23.90746 * 16 15 8 19 19 N 1.31615 * 120.00230 * 201.12978 * 18 16 15 20 20 Si 1.86796 * 119.99883 * 21.12512 * 18 16 15 21 21 H 1.48503 * 109.47358 * 267.19893 * 20 18 16 22 22 H 1.48504 * 109.46876 * 27.19546 * 20 18 16 23 23 H 1.48499 * 109.47469 * 147.19711 * 20 18 16 24 24 C 1.41296 * 107.17163 * 180.26007 * 3 2 1 25 25 N 1.30447 * 108.01805 * 359.58869 * 24 3 2 26 26 N 1.34264 * 126.29161 * 180.02562 * 2 1 3 27 27 C 1.46497 * 125.75176 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.46610 * 90.00307 * 1 2 3 29 29 H 1.09005 * 109.46925 * 210.00292 * 1 2 3 30 30 H 1.08997 * 109.47139 * 330.00466 * 1 2 3 31 31 H 1.08995 * 109.75717 * 252.37171 * 7 6 4 32 32 H 1.09001 * 109.74703 * 13.05997 * 7 6 4 33 33 H 1.08999 * 110.36433 * 207.00881 * 10 8 7 34 34 H 1.09004 * 110.36307 * 329.20971 * 10 8 7 35 35 H 1.09003 * 110.41404 * 241.07341 * 11 10 8 36 36 H 1.08997 * 110.20577 * 118.81883 * 11 10 8 37 37 H 1.09001 * 109.74949 * 107.62653 * 14 6 4 38 38 H 1.09004 * 109.78820 * 346.92429 * 14 6 4 39 39 H 0.97007 * 120.00067 * 180.02562 * 19 18 16 40 40 H 1.07997 * 125.98812 * 179.73711 * 24 3 2 41 41 H 1.09001 * 109.47467 * 89.99930 * 27 26 2 42 42 H 1.09004 * 109.46655 * 209.99990 * 27 26 2 43 43 H 1.09002 * 109.47249 * 329.99486 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 1.0264 2.8897 0.7764 6 7 2.4376 3.3976 -0.8621 7 6 3.5382 2.9886 -1.7493 8 6 3.2034 3.4830 -3.1893 9 1 3.9603 3.1894 -3.9168 10 6 1.7908 2.9798 -3.5630 11 6 0.8339 4.0711 -3.0562 12 6 1.7501 5.1402 -2.4189 13 1 1.3577 6.1488 -2.5490 14 6 1.9523 4.7849 -0.9360 15 7 3.0566 4.9559 -3.0968 16 6 3.9223 5.9203 -3.5389 17 1 3.9082 6.9040 -3.0932 18 6 4.8181 5.6337 -4.5598 19 7 5.9002 6.3675 -4.7111 20 14 4.4878 4.2065 -5.7188 21 1 5.1588 2.9856 -5.2045 22 1 3.0247 3.9679 -5.8057 23 1 5.0174 4.5314 -7.0676 24 6 3.6591 0.6498 -0.0061 25 7 3.6340 -0.6544 -0.0006 26 7 2.3017 -1.0822 -0.0005 27 6 1.8501 -2.4758 -0.0006 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 4.4720 3.4357 -1.4082 32 1 3.6280 1.9023 -1.7481 33 1 1.7002 2.8719 -4.6438 34 1 1.5833 2.0305 -3.0691 35 1 0.1524 3.6626 -2.3100 36 1 0.2747 4.4978 -3.8888 37 1 2.6877 5.4565 -0.4931 38 1 1.0052 4.8733 -0.4036 39 1 6.5260 6.1674 -5.4248 40 1 4.5449 1.2676 -0.0117 41 1 1.7377 -2.8213 -1.0282 42 1 2.5850 -3.0959 0.5129 43 1 0.8916 -2.5472 0.5137 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029214026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:43 Heat of formation + Delta-G solvation = 71.332470 kcal Electronic energy + Delta-G solvation = -26486.823773 eV Core-core repulsion = 22955.401720 eV Total energy + Delta-G solvation = -3531.422053 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.58016 -41.31729 -39.23240 -35.55859 -34.68546 -34.18286 -33.08108 -32.28916 -31.74554 -28.94058 -27.72604 -27.55737 -25.64672 -25.38334 -23.25268 -21.84856 -21.72392 -20.66882 -19.98788 -18.85034 -18.00354 -17.58033 -17.22368 -16.62672 -16.52481 -16.45944 -15.39276 -15.25724 -15.13990 -15.05750 -14.69337 -14.60266 -14.05401 -14.02218 -13.93378 -13.69115 -13.47903 -13.32284 -13.27224 -13.02540 -12.98448 -12.79116 -12.50086 -12.19602 -11.97697 -11.85303 -11.57966 -11.43538 -11.24738 -10.89393 -10.68348 -10.34299 -9.83008 -9.53748 -8.89354 -8.15790 -5.43728 0.61031 1.19065 1.27713 1.41039 1.45309 1.50429 1.95814 2.26552 2.42542 3.00692 3.23773 3.45823 3.61775 3.81679 3.85396 3.99779 4.02744 4.08393 4.14173 4.27871 4.33153 4.40263 4.47909 4.54217 4.57199 4.65571 4.69954 4.72981 4.76027 4.85257 4.90655 4.96949 4.99654 5.04945 5.07239 5.23341 5.34682 5.37424 5.59883 5.72922 5.94572 6.14685 6.51506 6.55306 6.72039 7.24580 7.51859 8.20572 9.04643 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019224 B = 0.005189 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.171559 B = 5394.799118 C = 5926.701395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.148 3.852 3 C -0.315 4.315 4 C 0.600 3.400 5 O -0.581 6.581 6 N -0.586 5.586 7 C 0.107 3.893 8 C 0.112 3.888 9 H 0.064 0.936 10 C -0.120 4.120 11 C -0.113 4.113 12 C 0.132 3.868 13 H 0.088 0.912 14 C 0.113 3.887 15 N -0.614 5.614 16 C -0.220 4.220 17 H 0.059 0.941 18 C -0.031 4.031 19 N -0.956 5.956 20 Si 0.934 3.066 21 H -0.276 1.276 22 H -0.248 1.248 23 H -0.315 1.315 24 C 0.076 3.924 25 N -0.321 5.321 26 N -0.360 5.360 27 C 0.085 3.915 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.094 0.906 39 H 0.261 0.739 40 H 0.194 0.806 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.100 -18.993 7.910 24.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.015 3.985 3 C -0.330 4.330 4 C 0.389 3.611 5 O -0.463 6.463 6 N -0.316 5.316 7 C -0.018 4.018 8 C 0.006 3.994 9 H 0.082 0.918 10 C -0.159 4.159 11 C -0.152 4.152 12 C 0.026 3.974 13 H 0.106 0.894 14 C -0.011 4.011 15 N -0.337 5.337 16 C -0.349 4.349 17 H 0.076 0.924 18 C -0.226 4.226 19 N -0.602 5.602 20 Si 0.764 3.236 21 H -0.204 1.204 22 H -0.172 1.172 23 H -0.244 1.244 24 C -0.110 4.110 25 N -0.141 5.141 26 N -0.140 5.140 27 C -0.054 4.054 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.211 0.789 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.660 -19.890 8.186 24.958 hybrid contribution 0.504 0.818 -0.840 1.277 sum -12.156 -19.072 7.346 23.780 Atomic orbital electron populations 1.20725 0.84175 1.05600 1.05014 1.21757 0.95886 0.85775 0.95078 1.19938 0.93941 0.93180 1.25904 1.17463 0.80276 0.84343 0.78976 1.90686 1.34923 1.79908 1.40777 1.47846 1.35451 1.11012 1.37309 1.22764 0.88720 1.00116 0.90243 1.22760 0.96964 0.84947 0.94750 0.91801 1.22384 0.94228 0.98832 1.00408 1.22294 0.96978 0.95760 1.00191 1.22217 0.85819 0.98758 0.90652 0.89374 1.22157 0.99749 0.81327 0.97877 1.45541 1.18806 1.00565 1.68803 1.18486 1.10478 0.93436 1.12469 0.92352 1.25651 0.96647 1.00704 0.99547 1.69949 1.11548 1.44376 1.34354 0.86021 0.79671 0.79609 0.78297 1.20372 1.17239 1.24398 1.24170 0.97408 0.92018 0.97405 1.77123 0.97642 1.13051 1.26263 1.48655 1.03136 1.07671 1.54530 1.22380 1.02674 0.75007 1.05357 0.88152 0.87487 0.89920 0.92461 0.88417 0.92368 0.90281 0.90372 0.91400 0.93155 0.88786 0.92988 0.78929 0.88754 0.88369 0.86339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 9.93 71.24 0.71 -0.75 16 2 C 0.15 3.28 7.01 42.14 0.30 3.57 16 3 C -0.31 -8.84 5.15 -20.15 -0.10 -8.94 16 4 C 0.60 19.50 7.36 86.67 0.64 20.14 16 5 O -0.58 -21.37 15.51 -4.05 -0.06 -21.43 16 6 N -0.59 -19.59 2.29 -814.97 -1.86 -21.45 16 7 C 0.11 3.68 5.23 87.25 0.46 4.14 16 8 C 0.11 4.43 2.96 46.17 0.14 4.56 16 9 H 0.06 2.78 3.29 -2.38 -0.01 2.77 16 10 C -0.12 -3.92 6.01 31.37 0.19 -3.73 16 11 C -0.11 -3.52 6.18 31.37 0.19 -3.33 16 12 C 0.13 4.83 4.27 45.44 0.19 5.02 16 13 H 0.09 3.17 8.14 -2.38 -0.02 3.15 16 14 C 0.11 3.91 5.90 86.53 0.51 4.42 16 15 N -0.61 -27.62 2.50 -632.97 -1.58 -29.20 16 16 C -0.22 -12.14 10.72 84.03 0.90 -11.24 16 17 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 18 C -0.03 -1.75 5.46 84.86 0.46 -1.29 16 19 N -0.96 -59.32 13.97 21.65 0.30 -59.01 16 20 Si 0.93 44.98 24.76 68.60 1.70 46.68 16 21 H -0.28 -12.67 6.64 99.48 0.66 -12.01 16 22 H -0.25 -11.14 5.74 99.48 0.57 -10.57 16 23 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 24 C 0.08 2.07 9.64 85.65 0.83 2.90 16 25 N -0.32 -8.40 12.50 -56.27 -0.70 -9.10 16 26 N -0.36 -7.29 3.98 -354.31 -1.41 -8.70 16 27 C 0.08 0.78 11.24 127.77 1.44 2.22 16 28 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.11 0.84 7.05 -2.38 -0.02 0.83 16 30 H 0.08 1.63 7.01 -2.39 -0.02 1.62 16 31 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.10 2.97 4.85 -2.39 -0.01 2.96 16 33 H 0.06 1.94 7.04 -2.39 -0.02 1.92 16 34 H 0.08 2.26 7.88 -2.38 -0.02 2.24 16 35 H 0.08 2.17 7.86 -2.39 -0.02 2.16 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.09 3.04 7.15 -2.38 -0.02 3.03 16 39 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 40 H 0.19 4.80 7.51 -2.91 -0.02 4.78 16 41 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.12 0.39 7.02 -2.39 -0.02 0.37 16 Total: -1.00 -73.48 332.06 4.07 -69.41 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.84 Total: 15.11 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 6.84 Total: 17.70 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -5.26 Total: -127.46 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.06 Total: -21.43 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.70 Total: 46.68 kcal Total: -73.48 4.07 -69.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029214026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.743 kcal (2) G-P(sol) polarization free energy of solvation -73.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds