Wall clock time and date at job start Fri Apr 10 2020 17:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35029 * 126.38887 * 2 1 4 4 H 0.97004 * 124.87979 * 0.04318 * 3 2 1 5 5 N 1.28458 * 110.23488 * 180.02562 * 3 2 1 6 6 C 1.31812 * 110.07384 * 0.02562 * 5 3 2 7 7 C 1.47711 * 126.51754 * 180.02562 * 6 5 3 8 8 O 1.21580 * 119.99598 * 186.37133 * 7 6 5 9 9 N 1.34773 * 120.00266 * 6.08919 * 7 6 5 10 10 C 1.47161 * 120.71026 * 356.71478 * 9 7 6 11 11 C 1.53880 * 108.02288 * 132.75487 * 10 9 7 12 12 H 1.09004 * 112.09218 * 181.91561 * 11 10 9 13 13 C 1.54545 * 107.83640 * 306.50826 * 11 10 9 14 14 C 1.54275 * 104.84936 * 89.08024 * 13 11 10 15 15 C 1.54545 * 104.85088 * 359.97438 * 14 13 11 16 16 H 1.09003 * 112.18345 * 146.41359 * 15 14 13 17 17 C 1.47168 * 120.70903 * 176.43859 * 9 7 6 18 18 N 1.48306 * 107.21494 * 58.37088 * 11 10 9 19 19 C 1.36936 * 128.08142 * 106.65583 * 18 11 10 20 20 H 1.07995 * 119.99718 * 15.18215 * 19 18 11 21 21 C 1.38813 * 120.00044 * 195.18118 * 19 18 11 22 22 N 1.31615 * 120.00028 * 9.62106 * 21 19 18 23 23 Si 1.86805 * 119.99782 * 189.61911 * 21 19 18 24 24 H 1.48497 * 109.46884 * 60.00043 * 23 21 19 25 25 H 1.48498 * 109.46813 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47320 * 300.00071 * 23 21 19 27 27 C 1.35369 * 126.38441 * 180.35212 * 2 1 3 28 28 C 1.50701 * 127.24883 * 359.97438 * 27 2 1 29 29 H 1.09003 * 109.47014 * 89.97646 * 1 2 3 30 30 H 1.09007 * 109.46846 * 209.97540 * 1 2 3 31 31 H 1.08995 * 109.47006 * 329.97358 * 1 2 3 32 32 H 1.09003 * 109.75071 * 252.38600 * 10 9 7 33 33 H 1.08998 * 109.74849 * 13.07262 * 10 9 7 34 34 H 1.09002 * 110.36704 * 207.92622 * 13 11 10 35 35 H 1.09008 * 110.36245 * 330.24121 * 13 11 10 36 36 H 1.09003 * 110.36433 * 241.15324 * 14 13 11 37 37 H 1.09001 * 110.36402 * 118.84003 * 14 13 11 38 38 H 1.09006 * 109.74634 * 346.87570 * 17 9 7 39 39 H 1.08993 * 109.74804 * 107.60828 * 17 9 7 40 40 H 0.97003 * 119.99868 * 180.02562 * 22 21 19 41 41 H 1.08999 * 109.47475 * 270.16269 * 28 27 2 42 42 H 1.09001 * 109.47300 * 30.16776 * 28 27 2 43 43 H 1.09001 * 109.46997 * 150.16155 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0870 0.0000 4 1 1.9966 2.0057 0.0006 5 7 3.5420 0.7296 -0.0005 6 6 3.6321 -0.5854 -0.0015 7 6 4.8765 -1.3812 -0.0018 8 8 4.8248 -2.5902 -0.1195 9 7 6.0695 -0.7666 0.1227 10 6 6.1556 0.7010 0.1877 11 6 7.0817 1.0721 1.3593 12 1 7.1664 2.1511 1.4891 13 6 6.5532 0.3594 2.6246 14 6 7.2595 -1.0122 2.6299 15 6 8.1501 -1.0040 1.3670 16 1 9.0767 -1.5591 1.5132 17 6 7.3133 -1.5491 0.2026 18 7 8.3952 0.4343 1.0995 19 6 9.5614 1.0332 0.7039 20 1 9.6705 2.1050 0.7789 21 6 10.6034 0.2626 0.2065 22 7 10.4095 -1.0110 -0.0631 23 14 12.2807 1.0332 -0.0803 24 1 12.8075 1.5637 1.2028 25 1 13.2126 0.0066 -0.6120 26 1 12.1551 2.1420 -1.0600 27 6 2.3100 -1.0898 -0.0067 28 6 1.8854 -2.5357 -0.0150 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8903 0.5135 31 1 -0.3633 0.8897 0.5142 32 1 6.5679 1.0875 -0.7444 33 1 5.1637 1.1212 0.3539 34 1 6.8179 0.9258 3.5176 35 1 5.4726 0.2294 2.5633 36 1 6.5262 -1.8166 2.5714 37 1 7.8715 -1.1202 3.5254 38 1 7.0775 -2.5986 0.3794 39 1 7.8723 -1.4482 -0.7276 40 1 11.1377 -1.5496 -0.4103 41 1 1.7806 -2.8896 1.0106 42 1 0.9303 -2.6309 -0.5317 43 1 2.6381 -3.1325 -0.5302 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029246705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:51 Heat of formation + Delta-G solvation = 84.535746 kcal Electronic energy + Delta-G solvation = -26311.190178 eV Core-core repulsion = 22780.340662 eV Total energy + Delta-G solvation = -3530.849516 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.68774 -39.68920 -37.56520 -33.97197 -33.26958 -32.47865 -32.18286 -30.45207 -29.20877 -28.41974 -26.37126 -26.04677 -24.23404 -23.67589 -22.58424 -20.02175 -19.61734 -19.41583 -18.52169 -17.56317 -16.75432 -15.99807 -15.84891 -15.13593 -14.82134 -14.58341 -14.01776 -13.72041 -13.48705 -13.18475 -13.08411 -12.96284 -12.80555 -12.69480 -12.64787 -12.37741 -12.09170 -11.65521 -11.57715 -11.41520 -11.05059 -10.84914 -10.80951 -10.27281 -10.25920 -9.92342 -9.75866 -9.56616 -9.43484 -9.26209 -9.13247 -8.71068 -8.63372 -7.90433 -6.74926 -5.77641 -3.12077 1.75622 2.14370 2.84231 3.39879 3.45103 3.45946 3.71088 3.85655 4.46542 4.57128 4.61774 4.83062 5.21715 5.24937 5.27362 5.39261 5.40362 5.55574 5.74049 5.75937 5.84707 5.87029 5.87847 5.96955 6.08215 6.19592 6.26461 6.37619 6.46891 6.54366 6.61292 6.67177 6.78000 6.83838 6.88797 6.96339 7.04188 7.21317 7.39164 7.57188 7.76473 7.95377 8.20833 8.24124 8.80505 9.12173 9.74522 10.52676 11.35550 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.004180 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.527151 B = 6696.508517 C = 6997.979925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.004 3.996 3 N -0.390 5.390 4 H 0.441 0.559 5 N -0.254 5.254 6 C 0.008 3.992 7 C 0.586 3.414 8 O -0.551 6.551 9 N -0.574 5.574 10 C 0.069 3.931 11 C 0.135 3.865 12 H 0.075 0.925 13 C -0.121 4.121 14 C -0.137 4.137 15 C 0.169 3.831 16 H 0.119 0.881 17 C 0.112 3.888 18 N -0.586 5.586 19 C -0.226 4.226 20 H 0.075 0.925 21 C -0.003 4.003 22 N -0.913 5.913 23 Si 0.911 3.089 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C -0.148 4.148 28 C -0.078 4.078 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.117 0.883 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.255 0.745 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.241 2.949 1.763 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 N -0.102 5.102 4 H 0.285 0.715 5 N -0.089 5.089 6 C -0.153 4.153 7 C 0.372 3.628 8 O -0.429 6.429 9 N -0.304 5.304 10 C -0.057 4.057 11 C 0.026 3.974 12 H 0.093 0.907 13 C -0.160 4.160 14 C -0.176 4.176 15 C 0.061 3.939 16 H 0.136 0.864 17 C -0.011 4.011 18 N -0.307 5.307 19 C -0.354 4.354 20 H 0.093 0.907 21 C -0.201 4.201 22 N -0.559 5.559 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.158 4.158 28 C -0.136 4.136 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.134 0.866 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.291 3.200 1.579 18.636 hybrid contribution 0.319 0.438 -0.272 0.606 sum -17.973 3.637 1.307 18.384 Atomic orbital electron populations 1.20305 0.86909 1.03673 1.03059 1.21157 0.94973 0.87153 1.08928 1.43452 1.03424 1.09217 1.54149 0.71546 1.73502 1.00214 1.14924 1.20232 1.22114 0.95189 0.89406 1.08609 1.17027 0.81592 0.86245 0.77960 1.90703 1.86341 1.13288 1.52594 1.48096 1.05865 1.08118 1.68326 1.23305 1.02853 0.79288 1.00216 1.21958 0.86944 0.96378 0.92091 0.90706 1.22437 0.98268 0.97061 0.98224 1.22652 0.98718 0.96184 1.00079 1.21788 0.96140 0.87135 0.88797 0.86391 1.22390 0.82422 0.93913 1.02384 1.45196 1.04699 1.02743 1.78072 1.18949 0.89397 0.91915 1.35108 0.90716 1.24823 0.98895 0.96342 0.99991 1.69834 1.31422 1.06035 1.48652 0.86218 0.83832 0.77933 0.77836 1.21245 1.21628 1.21196 1.20090 0.90763 0.96531 1.08457 1.20173 1.01205 0.90046 1.02132 0.90560 0.89718 0.91302 0.92323 0.86580 0.92933 0.93128 0.92929 0.92886 0.91280 0.90120 0.93477 0.91735 0.92348 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.14 36.01 0.37 -0.13 16 2 C 0.00 0.04 7.23 -82.21 -0.59 -0.56 16 3 N -0.39 -4.20 6.83 33.50 0.23 -3.97 16 4 H 0.44 2.96 8.96 -190.44 -1.71 1.25 16 5 N -0.25 -3.80 8.58 33.42 0.29 -3.51 16 6 C 0.01 0.13 6.89 -82.76 -0.57 -0.44 16 7 C 0.59 11.94 7.71 -12.39 -0.10 11.85 16 8 O -0.55 -12.22 14.58 5.29 0.08 -12.14 16 9 N -0.57 -12.07 2.26 -172.99 -0.39 -12.46 16 10 C 0.07 1.37 5.70 -3.22 -0.02 1.35 16 11 C 0.13 2.79 4.32 -65.67 -0.28 2.50 16 12 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 13 C -0.12 -2.29 6.18 -25.25 -0.16 -2.45 16 14 C -0.14 -2.81 6.18 -25.25 -0.16 -2.96 16 15 C 0.17 4.00 3.11 -65.90 -0.20 3.79 16 16 H 0.12 3.12 6.38 -51.93 -0.33 2.79 16 17 C 0.11 2.59 5.75 -3.47 -0.02 2.57 16 18 N -0.59 -14.46 2.81 -152.86 -0.43 -14.89 16 19 C -0.23 -6.06 10.37 -15.06 -0.16 -6.22 16 20 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 21 C 0.00 -0.09 5.42 -17.43 -0.09 -0.19 16 22 N -0.91 -25.66 10.41 55.49 0.58 -25.08 16 23 Si 0.91 21.63 29.56 -169.99 -5.03 16.61 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 C -0.15 -2.10 6.25 -104.40 -0.65 -2.75 16 28 C -0.08 -0.98 9.67 36.01 0.35 -0.63 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.48 7.99 -51.93 -0.41 0.06 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.12 2.06 3.98 -95.42 -0.38 1.68 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.92 7.84 -51.92 -0.41 0.51 16 36 H 0.05 1.06 7.83 -51.93 -0.41 0.65 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 1.59 7.14 -51.93 -0.37 1.22 16 39 H 0.08 2.11 7.80 -51.93 -0.40 1.71 16 40 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.56 8.00 -51.93 -0.42 0.14 16 43 H 0.09 1.29 6.62 -51.93 -0.34 0.94 16 LS Contribution 336.96 15.07 5.08 5.08 Total: -1.00 -31.89 336.96 -9.57 -41.47 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.69 Total: 3.17 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -2.29 Total: 5.74 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 0.27 Total: -59.92 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.08 Total: -12.14 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.89 -9.57 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029246705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.001 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds