Wall clock time and date at job start Fri Apr 10 2020 17:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35029 * 126.38887 * 2 1 4 4 H 0.97004 * 124.87979 * 0.04318 * 3 2 1 5 5 N 1.28458 * 110.23488 * 180.02562 * 3 2 1 6 6 C 1.31812 * 110.07384 * 0.02562 * 5 3 2 7 7 C 1.47711 * 126.51754 * 180.02562 * 6 5 3 8 8 O 1.21580 * 119.99598 * 186.37133 * 7 6 5 9 9 N 1.34773 * 120.00266 * 6.08919 * 7 6 5 10 10 C 1.47161 * 120.71026 * 356.71478 * 9 7 6 11 11 C 1.53880 * 108.02288 * 132.75487 * 10 9 7 12 12 H 1.09004 * 112.09218 * 181.91561 * 11 10 9 13 13 C 1.54545 * 107.83640 * 306.50826 * 11 10 9 14 14 C 1.54275 * 104.84936 * 89.08024 * 13 11 10 15 15 C 1.54545 * 104.85088 * 359.97438 * 14 13 11 16 16 H 1.09003 * 112.18345 * 146.41359 * 15 14 13 17 17 C 1.47168 * 120.70903 * 176.43859 * 9 7 6 18 18 N 1.48306 * 107.21494 * 58.37088 * 11 10 9 19 19 C 1.36936 * 128.08142 * 106.65583 * 18 11 10 20 20 H 1.07995 * 119.99718 * 15.18215 * 19 18 11 21 21 C 1.38813 * 120.00044 * 195.18118 * 19 18 11 22 22 N 1.31615 * 120.00028 * 9.62106 * 21 19 18 23 23 Si 1.86805 * 119.99782 * 189.61911 * 21 19 18 24 24 H 1.48497 * 109.46884 * 60.00043 * 23 21 19 25 25 H 1.48498 * 109.46813 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47320 * 300.00071 * 23 21 19 27 27 C 1.35369 * 126.38441 * 180.35212 * 2 1 3 28 28 C 1.50701 * 127.24883 * 359.97438 * 27 2 1 29 29 H 1.09003 * 109.47014 * 89.97646 * 1 2 3 30 30 H 1.09007 * 109.46846 * 209.97540 * 1 2 3 31 31 H 1.08995 * 109.47006 * 329.97358 * 1 2 3 32 32 H 1.09003 * 109.75071 * 252.38600 * 10 9 7 33 33 H 1.08998 * 109.74849 * 13.07262 * 10 9 7 34 34 H 1.09002 * 110.36704 * 207.92622 * 13 11 10 35 35 H 1.09008 * 110.36245 * 330.24121 * 13 11 10 36 36 H 1.09003 * 110.36433 * 241.15324 * 14 13 11 37 37 H 1.09001 * 110.36402 * 118.84003 * 14 13 11 38 38 H 1.09006 * 109.74634 * 346.87570 * 17 9 7 39 39 H 1.08993 * 109.74804 * 107.60828 * 17 9 7 40 40 H 0.97003 * 119.99868 * 180.02562 * 22 21 19 41 41 H 1.08999 * 109.47475 * 270.16269 * 28 27 2 42 42 H 1.09001 * 109.47300 * 30.16776 * 28 27 2 43 43 H 1.09001 * 109.46997 * 150.16155 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0870 0.0000 4 1 1.9966 2.0057 0.0006 5 7 3.5420 0.7296 -0.0005 6 6 3.6321 -0.5854 -0.0015 7 6 4.8765 -1.3812 -0.0018 8 8 4.8248 -2.5902 -0.1195 9 7 6.0695 -0.7666 0.1227 10 6 6.1556 0.7010 0.1877 11 6 7.0817 1.0721 1.3593 12 1 7.1664 2.1511 1.4891 13 6 6.5532 0.3594 2.6246 14 6 7.2595 -1.0122 2.6299 15 6 8.1501 -1.0040 1.3670 16 1 9.0767 -1.5591 1.5132 17 6 7.3133 -1.5491 0.2026 18 7 8.3952 0.4343 1.0995 19 6 9.5614 1.0332 0.7039 20 1 9.6705 2.1050 0.7789 21 6 10.6034 0.2626 0.2065 22 7 10.4095 -1.0110 -0.0631 23 14 12.2807 1.0332 -0.0803 24 1 12.8075 1.5637 1.2028 25 1 13.2126 0.0066 -0.6120 26 1 12.1551 2.1420 -1.0600 27 6 2.3100 -1.0898 -0.0067 28 6 1.8854 -2.5357 -0.0150 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8903 0.5135 31 1 -0.3633 0.8897 0.5142 32 1 6.5679 1.0875 -0.7444 33 1 5.1637 1.1212 0.3539 34 1 6.8179 0.9258 3.5176 35 1 5.4726 0.2294 2.5633 36 1 6.5262 -1.8166 2.5714 37 1 7.8715 -1.1202 3.5254 38 1 7.0775 -2.5986 0.3794 39 1 7.8723 -1.4482 -0.7276 40 1 11.1377 -1.5496 -0.4103 41 1 1.7806 -2.8896 1.0106 42 1 0.9303 -2.6309 -0.5317 43 1 2.6381 -3.1325 -0.5302 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029246705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:50 Heat of formation + Delta-G solvation = 64.514633 kcal Electronic energy + Delta-G solvation = -26312.058359 eV Core-core repulsion = 22780.340662 eV Total energy + Delta-G solvation = -3531.717697 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.74264 -41.37159 -39.24083 -35.55675 -34.43981 -34.13147 -33.47392 -32.12331 -31.07382 -29.35181 -27.97361 -27.01870 -25.94950 -25.41605 -24.12024 -21.32108 -21.16173 -20.93865 -20.16484 -18.64488 -18.44074 -17.49744 -17.21831 -16.62565 -16.51114 -16.42290 -15.58105 -15.07358 -14.82763 -14.65498 -14.51991 -14.34364 -14.00056 -13.82352 -13.59476 -13.57929 -13.33686 -13.28205 -12.97417 -12.94118 -12.78181 -12.68566 -12.55058 -12.03755 -11.91331 -11.69057 -11.49149 -11.23556 -11.13839 -10.89350 -10.60042 -10.30468 -9.72340 -9.56401 -8.69989 -7.84050 -5.19921 0.53341 1.13783 1.48962 1.51044 1.57385 1.86065 2.25359 2.37547 2.52699 3.33854 3.37235 3.51399 3.79566 3.99164 4.08286 4.13576 4.22693 4.28720 4.35443 4.37648 4.54345 4.66602 4.80757 4.84010 4.87451 4.93381 4.94844 4.99522 5.03359 5.05970 5.08310 5.14434 5.19823 5.24235 5.33414 5.38928 5.52678 5.56835 5.64618 5.83076 6.20691 6.24823 6.56854 6.92485 7.06042 7.22294 7.72976 8.53143 9.27748 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.004180 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.527151 B = 6696.508517 C = 6997.979925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.034 3.966 3 N -0.365 5.365 4 H 0.461 0.539 5 N -0.270 5.270 6 C -0.028 4.028 7 C 0.584 3.416 8 O -0.578 6.578 9 N -0.580 5.580 10 C 0.079 3.921 11 C 0.129 3.871 12 H 0.090 0.910 13 C -0.107 4.107 14 C -0.128 4.128 15 C 0.168 3.832 16 H 0.083 0.917 17 C 0.127 3.873 18 N -0.605 5.605 19 C -0.236 4.236 20 H 0.081 0.919 21 C -0.057 4.057 22 N -0.939 5.939 23 Si 0.975 3.025 24 H -0.279 1.279 25 H -0.298 1.298 26 H -0.280 1.280 27 C -0.174 4.174 28 C -0.074 4.074 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.034 0.966 33 H 0.146 0.854 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.039 0.961 40 H 0.247 0.753 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.592 5.154 2.666 23.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 N -0.081 5.081 4 H 0.310 0.690 5 N -0.106 5.106 6 C -0.186 4.186 7 C 0.371 3.629 8 O -0.458 6.458 9 N -0.311 5.311 10 C -0.046 4.046 11 C 0.022 3.978 12 H 0.108 0.892 13 C -0.146 4.146 14 C -0.167 4.167 15 C 0.060 3.940 16 H 0.101 0.899 17 C 0.003 3.997 18 N -0.327 5.327 19 C -0.364 4.364 20 H 0.099 0.901 21 C -0.251 4.251 22 N -0.586 5.586 23 Si 0.804 3.196 24 H -0.205 1.205 25 H -0.225 1.225 26 H -0.206 1.206 27 C -0.185 4.185 28 C -0.131 4.131 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.052 0.948 33 H 0.163 0.837 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.679 5.450 2.495 22.493 hybrid contribution 1.193 -0.214 -0.600 1.352 sum -20.487 5.236 1.895 21.230 Atomic orbital electron populations 1.20543 0.82969 1.05629 1.04752 1.21724 0.96841 0.85516 1.05259 1.43499 1.02227 1.10613 1.51785 0.69028 1.73153 1.02524 1.13941 1.21030 1.21672 0.94592 0.90297 1.12081 1.17520 0.82337 0.86324 0.76671 1.90674 1.86944 1.14707 1.53474 1.48074 1.05427 1.08416 1.69149 1.23302 1.04133 0.78513 0.98688 1.22208 0.85241 0.97236 0.93106 0.89205 1.22333 0.98671 0.95666 0.97911 1.22525 0.98268 0.97485 0.98418 1.21616 0.95331 0.86659 0.90382 0.89873 1.21925 0.83431 0.93963 1.00369 1.45390 1.05766 1.03290 1.78221 1.19302 0.90391 0.92346 1.34386 0.90128 1.25577 1.02095 0.96854 1.00547 1.70041 1.31693 1.07167 1.49744 0.85219 0.79760 0.76880 0.77776 1.20543 1.22465 1.20572 1.20386 0.90028 0.98172 1.09867 1.20137 1.01692 0.88938 1.02373 0.88807 0.88662 0.88522 0.94785 0.83746 0.91076 0.91786 0.92834 0.92212 0.92061 0.94212 0.94352 0.91360 0.89035 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.14 71.24 0.72 0.18 16 2 C 0.03 0.58 7.23 41.40 0.30 0.88 16 3 N -0.37 -6.48 6.83 -47.93 -0.33 -6.80 16 4 H 0.46 4.05 8.96 -219.99 -1.97 2.07 16 5 N -0.27 -7.48 8.58 -48.18 -0.41 -7.90 16 6 C -0.03 -0.93 6.89 42.46 0.29 -0.64 16 7 C 0.58 24.34 7.71 86.75 0.67 25.01 16 8 O -0.58 -26.74 14.58 -3.97 -0.06 -26.80 16 9 N -0.58 -25.18 2.26 -819.48 -1.85 -27.04 16 10 C 0.08 3.12 5.70 86.55 0.49 3.61 16 11 C 0.13 5.27 4.32 45.47 0.20 5.46 16 12 H 0.09 3.37 8.14 -2.38 -0.02 3.35 16 13 C -0.11 -3.88 6.18 31.55 0.20 -3.68 16 14 C -0.13 -5.24 6.18 31.55 0.20 -5.05 16 15 C 0.17 8.28 3.11 45.30 0.14 8.42 16 16 H 0.08 4.68 6.38 -2.39 -0.02 4.66 16 17 C 0.13 6.29 5.75 86.39 0.50 6.78 16 18 N -0.60 -30.46 2.81 -637.53 -1.79 -32.25 16 19 C -0.24 -12.88 10.37 84.03 0.87 -12.01 16 20 H 0.08 4.21 7.85 -2.91 -0.02 4.19 16 21 C -0.06 -3.16 5.42 84.86 0.46 -2.70 16 22 N -0.94 -55.38 10.41 21.65 0.23 -55.16 16 23 Si 0.97 45.48 29.56 68.60 2.03 47.50 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 26 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 27 C -0.17 -4.57 6.25 -19.72 -0.12 -4.69 16 28 C -0.07 -1.75 9.67 71.24 0.69 -1.06 16 29 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.09 0.55 7.99 -2.38 -0.02 0.53 16 31 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.15 4.94 3.98 -58.65 -0.23 4.70 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.06 2.17 7.84 -2.38 -0.02 2.15 16 36 H 0.05 2.16 7.83 -2.39 -0.02 2.15 16 37 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.06 3.04 7.14 -2.38 -0.02 3.02 16 39 H 0.04 2.25 7.80 -2.39 -0.02 2.23 16 40 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.09 1.48 8.00 -2.39 -0.02 1.46 16 43 H 0.05 1.59 6.62 -2.39 -0.02 1.58 16 Total: -1.00 -73.56 336.96 2.25 -71.31 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -1.16 Total: 16.61 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: 5.60 Total: 20.52 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -4.16 Total: -129.14 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.06 Total: -26.80 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -73.56 2.25 -71.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029246705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.825 kcal (2) G-P(sol) polarization free energy of solvation -73.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds