Wall clock time and date at job start Fri Apr 10 2020 17:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38809 * 120.42674 * 2 1 4 4 C 1.39499 * 118.26202 * 180.23715 * 3 2 1 5 5 C 1.48455 * 120.54914 * 179.75956 * 4 3 2 6 6 O 1.21485 * 119.99996 * 359.72964 * 5 4 3 7 7 N 1.34770 * 120.00202 * 179.72265 * 5 4 3 8 8 C 1.46504 * 120.00263 * 179.72422 * 7 5 4 9 9 H 1.09005 * 109.32496 * 35.27897 * 8 7 5 10 10 C 1.47088 * 109.32898 * 154.93201 * 8 7 5 11 11 C 1.52566 * 114.32732 * 183.06384 * 10 8 7 12 12 C 1.50886 * 109.35272 * 274.98130 * 11 10 8 13 13 C 1.53949 * 110.09528 * 91.89050 * 12 11 10 14 14 N 1.47608 * 112.13893 * 319.43543 * 13 12 11 15 15 C 1.36939 * 118.64118 * 137.86871 * 14 13 12 16 16 H 1.07996 * 119.99607 * 207.05226 * 15 14 13 17 17 C 1.38810 * 120.00223 * 27.05433 * 15 14 13 18 18 N 1.31617 * 119.99844 * 16.57967 * 17 15 14 19 19 Si 1.86797 * 119.99954 * 196.57830 * 17 15 14 20 20 H 1.48507 * 109.47000 * 94.73945 * 19 17 15 21 21 H 1.48503 * 109.47202 * 214.73807 * 19 17 15 22 22 H 1.48499 * 109.47103 * 334.74241 * 19 17 15 23 23 C 1.44661 * 122.54360 * 317.85623 * 14 13 12 24 24 N 1.33097 * 118.90081 * 359.48957 * 4 3 2 25 25 C 1.31559 * 120.73756 * 0.27245 * 24 4 3 26 26 N 1.31908 * 121.91605 * 359.97438 * 25 24 4 27 27 H 1.09006 * 109.46723 * 270.27945 * 1 2 3 28 28 H 1.09003 * 109.47730 * 30.27358 * 1 2 3 29 29 H 1.09001 * 109.47357 * 150.27889 * 1 2 3 30 30 H 1.07999 * 120.86723 * 0.02562 * 3 2 1 31 31 H 0.97005 * 119.99795 * 0.02562 * 7 5 4 32 32 H 1.09003 * 108.51480 * 304.31660 * 10 8 7 33 33 H 1.08998 * 108.51633 * 61.96488 * 10 8 7 34 34 H 1.08997 * 109.48891 * 34.94447 * 11 10 8 35 35 H 1.08998 * 109.49657 * 155.01776 * 11 10 8 36 36 H 1.09004 * 109.36599 * 212.07889 * 12 11 10 37 37 H 1.09003 * 109.36558 * 331.82534 * 12 11 10 38 38 H 1.08994 * 108.94602 * 80.11852 * 13 12 11 39 39 H 1.09001 * 108.94933 * 198.74657 * 13 12 11 40 40 H 0.97003 * 119.99981 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.61260 * 330.84636 * 23 14 13 42 42 H 1.08997 * 109.32663 * 210.90044 * 23 14 13 43 43 H 1.07998 * 119.03787 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6039 1.1442 -0.0051 5 6 4.4062 2.3933 -0.0107 6 8 3.8493 3.4729 -0.0158 7 7 5.7524 2.3296 -0.0099 8 6 6.5442 3.5622 -0.0216 9 1 6.0325 4.3251 0.5652 10 6 7.8650 3.2979 0.5692 11 6 8.7607 4.5279 0.6815 12 6 9.4898 4.7363 -0.6230 13 6 8.6840 5.6796 -1.5345 14 7 7.2353 5.4012 -1.4814 15 6 6.3654 6.4575 -1.4312 16 1 5.3967 6.3377 -0.9690 17 6 6.7285 7.6822 -1.9745 18 7 7.7415 7.7564 -2.8115 19 14 5.7793 9.2249 -1.5178 20 1 6.4650 9.9137 -0.3950 21 1 5.7163 10.1329 -2.6911 22 1 4.4021 8.8544 -1.1040 23 6 6.7007 4.0570 -1.4806 24 7 4.2027 -0.0444 0.0007 25 6 3.4954 -1.1537 0.0056 26 7 2.1764 -1.1396 0.0056 27 1 -0.3633 0.0050 1.0277 28 1 -0.3635 0.8875 -0.5181 29 1 -0.3634 -0.8925 -0.5095 30 1 1.6912 2.1442 0.0004 31 1 6.1971 1.4675 -0.0061 32 1 7.7212 2.8823 1.5666 33 1 8.3760 2.5553 -0.0435 34 1 8.1500 5.4037 0.9008 35 1 9.4844 4.3789 1.4828 36 1 10.4681 5.1741 -0.4244 37 1 9.6181 3.7761 -1.1227 38 1 8.8583 6.7088 -1.2211 39 1 9.0299 5.5606 -2.5613 40 1 7.9955 8.6123 -3.1908 41 1 7.3782 3.3935 -2.0181 42 1 5.7272 4.0557 -1.9708 43 1 4.0097 -2.1033 0.0098 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034167068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:24 Heat of formation + Delta-G solvation = 32.210904 kcal Electronic energy + Delta-G solvation = -25072.711136 eV Core-core repulsion = 21539.592645 eV Total energy + Delta-G solvation = -3533.118491 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.39902 -39.50306 -37.65638 -34.89575 -34.48795 -33.20649 -32.80365 -30.90745 -30.07854 -28.90429 -26.16928 -25.24316 -24.15970 -23.79050 -22.85399 -20.51366 -20.16487 -19.17808 -18.24374 -17.40519 -16.57912 -15.85888 -15.65580 -15.61716 -15.57400 -14.96039 -14.53291 -14.23347 -13.88001 -13.59370 -13.45432 -13.23567 -13.11419 -12.74583 -12.60934 -12.52114 -12.10643 -11.56691 -11.18456 -11.05537 -10.93725 -10.78458 -10.74242 -10.55956 -10.19809 -10.13706 -10.09950 -9.82884 -9.72146 -9.62421 -9.56748 -9.45665 -8.85040 -8.31213 -6.62081 -5.73332 -3.17024 0.35756 0.66385 2.81627 3.08829 3.42729 3.49806 3.53706 3.68185 3.71686 3.78711 4.32723 4.57439 4.67345 4.75610 5.08429 5.18213 5.25287 5.29532 5.36393 5.45440 5.47292 5.54158 5.57657 5.75629 5.98440 6.03095 6.06659 6.16288 6.30464 6.39639 6.57344 6.60281 6.62950 6.68982 6.74875 6.82861 6.93370 7.09457 7.45644 7.63164 7.72859 7.81360 7.93900 8.34894 8.53270 9.29575 9.94477 10.39130 11.34355 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.003822 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.711491 B = 7324.047095 C = 8539.684588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.175 3.825 3 C -0.171 4.171 4 C 0.142 3.858 5 C 0.560 3.440 6 O -0.513 6.513 7 N -0.696 5.696 8 C 0.112 3.888 9 H 0.090 0.910 10 C -0.113 4.113 11 C -0.100 4.100 12 C -0.144 4.144 13 C 0.176 3.824 14 N -0.583 5.583 15 C -0.257 4.257 16 H 0.070 0.930 17 C 0.006 3.994 18 N -0.904 5.904 19 Si 0.899 3.101 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.277 1.277 23 C 0.158 3.842 24 N -0.503 5.503 25 C 0.296 3.704 26 N -0.514 5.514 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.161 0.839 31 H 0.403 0.597 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.025 0.975 40 H 0.252 0.748 41 H 0.033 0.967 42 H 0.048 0.952 43 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.441 -16.986 6.998 19.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.027 3.973 3 C -0.194 4.194 4 C -0.005 4.005 5 C 0.342 3.658 6 O -0.387 6.387 7 N -0.346 5.346 8 C 0.006 3.994 9 H 0.108 0.892 10 C -0.151 4.151 11 C -0.138 4.138 12 C -0.183 4.183 13 C 0.051 3.949 14 N -0.303 5.303 15 C -0.387 4.387 16 H 0.088 0.912 17 C -0.193 4.193 18 N -0.549 5.549 19 Si 0.729 3.271 20 H -0.215 1.215 21 H -0.219 1.219 22 H -0.202 1.202 23 C 0.028 3.972 24 N -0.220 5.220 25 C 0.007 3.993 26 N -0.229 5.229 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.178 0.822 31 H 0.238 0.762 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.043 0.957 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.237 -16.846 6.880 19.236 hybrid contribution -0.529 1.040 0.193 1.183 sum -6.766 -15.806 7.073 18.592 Atomic orbital electron populations 1.20820 0.87260 1.04432 1.03938 1.21832 0.97913 0.87774 0.89775 1.22868 0.94821 1.01437 1.00280 1.21891 0.92225 0.92759 0.93651 1.17753 0.82904 0.86747 0.78398 1.90868 1.71084 1.27865 1.48887 1.46040 1.05283 1.10977 1.72347 1.21399 0.90732 0.84725 1.02594 0.89162 1.20575 0.95670 0.99094 0.99718 1.20826 0.97636 0.98134 0.97229 1.22082 0.98873 1.00532 0.96774 1.21047 0.81487 0.97158 0.95226 1.43603 1.01780 1.00043 1.84902 1.19326 0.98788 0.89416 1.31155 0.91243 1.25017 0.98463 0.98965 0.96810 1.70089 1.30246 1.24134 1.30414 0.86308 0.79864 0.83398 0.77513 1.21519 1.21869 1.20230 1.20926 0.97654 0.87342 0.91315 1.68350 1.41931 0.98573 1.13128 1.24945 0.86568 0.96761 0.90988 1.68197 1.10559 1.30523 1.13667 0.89418 0.89670 0.89705 0.82157 0.76179 0.93299 0.92638 0.90440 0.93311 0.92857 0.93612 0.90834 0.95667 0.93785 0.94846 0.93343 0.78211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.22 36.00 0.37 -0.35 16 2 C 0.17 1.80 6.83 -82.24 -0.56 1.24 16 3 C -0.17 -2.06 9.41 -38.90 -0.37 -2.43 16 4 C 0.14 1.97 6.79 -82.64 -0.56 1.41 16 5 C 0.56 9.36 7.77 -12.05 -0.09 9.27 16 6 O -0.51 -10.47 16.09 5.38 0.09 -10.38 16 7 N -0.70 -10.84 5.05 -56.37 -0.28 -11.12 16 8 C 0.11 2.02 2.34 -69.78 -0.16 1.86 16 9 H 0.09 1.93 7.57 -51.93 -0.39 1.53 16 10 C -0.11 -1.76 4.55 -29.79 -0.14 -1.89 16 11 C -0.10 -1.70 5.51 -28.01 -0.15 -1.85 16 12 C -0.14 -2.62 5.70 -27.30 -0.16 -2.77 16 13 C 0.18 4.13 4.67 -2.94 -0.01 4.12 16 14 N -0.58 -14.46 2.27 -172.03 -0.39 -14.85 16 15 C -0.26 -7.16 9.44 -15.06 -0.14 -7.31 16 16 H 0.07 2.00 7.88 -52.49 -0.41 1.58 16 17 C 0.01 0.16 4.84 -17.43 -0.08 0.08 16 18 N -0.90 -26.33 11.11 55.49 0.62 -25.71 16 19 Si 0.90 22.27 29.58 -169.99 -5.03 17.24 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.16 3.38 5.23 -4.04 -0.02 3.36 16 24 N -0.50 -6.14 9.70 -11.14 -0.11 -6.25 16 25 C 0.30 3.02 12.28 -92.26 -1.13 1.89 16 26 N -0.51 -5.55 10.36 -10.81 -0.11 -5.66 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.16 1.83 7.74 -52.49 -0.41 1.43 16 31 H 0.40 5.32 7.96 -40.82 -0.33 4.99 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.80 7.34 -51.93 -0.38 0.42 16 34 H 0.08 1.53 7.48 -51.93 -0.39 1.15 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.78 7.31 -51.93 -0.38 0.40 16 38 H 0.07 1.93 6.40 -51.93 -0.33 1.59 16 39 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.03 0.68 8.05 -51.93 -0.42 0.26 16 42 H 0.05 1.15 7.97 -51.93 -0.41 0.73 16 43 H 0.20 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 349.97 15.07 5.27 5.27 Total: -1.00 -32.13 349.97 -9.52 -41.65 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.36 Total: 3.19 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -3.22 Total: 6.62 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: -0.28 Total: -63.59 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.13 -9.52 -41.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034167068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.863 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds