Wall clock time and date at job start Fri Apr 10 2020 17:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38822 * 120.42187 * 2 1 4 4 C 1.38777 * 118.51169 * 179.97438 * 3 2 1 5 5 N 1.32128 * 119.15861 * 359.72980 * 4 3 2 6 6 C 1.32445 * 120.77159 * 0.54486 * 5 4 3 7 7 C 1.48532 * 119.18454 * 179.71624 * 6 5 4 8 8 O 1.21477 * 120.00203 * 179.73132 * 7 6 5 9 9 N 1.34777 * 120.00088 * 359.45905 * 7 6 5 10 10 C 1.46506 * 119.99835 * 180.02562 * 9 7 6 11 11 H 1.09006 * 108.45687 * 327.28100 * 10 9 7 12 12 C 1.52530 * 108.51904 * 209.72062 * 10 9 7 13 13 C 1.50130 * 105.41777 * 149.35460 * 12 10 9 14 14 C 1.54843 * 110.81303 * 97.68166 * 13 12 10 15 15 C 1.54899 * 110.14016 * 321.13040 * 14 13 12 16 16 N 1.43427 * 116.08198 * 318.64084 * 15 14 13 17 17 C 1.36943 * 120.54147 * 271.59545 * 16 15 14 18 18 H 1.07999 * 119.99352 * 336.40657 * 17 16 15 19 19 C 1.38807 * 120.00089 * 156.40846 * 17 16 15 20 20 N 1.31620 * 120.00215 * 338.83732 * 19 17 16 21 21 Si 1.86803 * 120.00123 * 158.83952 * 19 17 16 22 22 H 1.48508 * 109.46930 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47195 * 119.99169 * 21 19 17 24 24 H 1.48493 * 109.47401 * 239.99959 * 21 19 17 25 25 C 1.46236 * 108.52504 * 85.00093 * 10 9 7 26 26 N 1.32102 * 120.41796 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47468 * 270.02150 * 1 2 3 28 28 H 1.09010 * 109.47145 * 30.02372 * 1 2 3 29 29 H 1.08999 * 109.47715 * 150.01854 * 1 2 3 30 30 H 1.08007 * 120.74317 * 359.97438 * 3 2 1 31 31 H 1.07995 * 120.41989 * 180.02562 * 4 3 2 32 32 H 0.96993 * 120.00131 * 359.97438 * 9 7 6 33 33 H 1.09007 * 110.24798 * 268.32604 * 12 10 9 34 34 H 1.09003 * 110.25016 * 30.37788 * 12 10 9 35 35 H 1.09000 * 109.20520 * 337.33238 * 13 12 10 36 36 H 1.09004 * 109.16992 * 217.99967 * 13 12 10 37 37 H 1.08998 * 109.35622 * 200.92718 * 14 13 12 38 38 H 1.08998 * 109.24620 * 81.26893 * 14 13 12 39 39 H 1.09004 * 108.15850 * 196.92250 * 15 14 13 40 40 H 1.08999 * 107.99802 * 80.23466 * 15 14 13 41 41 H 0.97001 * 119.99732 * 180.02562 * 20 19 17 42 42 H 1.09005 * 109.83857 * 299.15300 * 25 10 9 43 43 H 1.08992 * 109.84602 * 60.13747 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2099 1.1971 0.0000 4 6 3.5969 1.1508 0.0005 5 7 4.2018 -0.0238 0.0065 6 6 3.5004 -1.1473 0.0011 7 6 4.2168 -2.4484 0.0016 8 8 3.5883 -3.4879 0.0016 9 7 5.5643 -2.4758 -0.0034 10 6 6.2709 -3.7592 -0.0034 11 1 5.6774 -4.4799 0.5592 12 6 7.6076 -3.5763 0.7082 13 6 7.9072 -4.9039 1.3420 14 6 8.8714 -5.7311 0.4568 15 6 8.5159 -5.5430 -1.0391 16 7 7.1178 -5.5372 -1.3591 17 6 6.4627 -6.7073 -1.6369 18 1 7.0159 -7.5651 -1.9898 19 6 5.0879 -6.7906 -1.4650 20 7 4.4714 -5.9419 -0.6700 21 14 4.1125 -8.1074 -2.3619 22 1 5.0333 -8.9287 -3.1884 23 1 3.4272 -8.9764 -1.3717 24 1 3.1019 -7.4637 -3.2390 25 6 6.3839 -4.2273 -1.3842 26 7 2.1758 -1.1392 0.0005 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3634 -0.8901 -0.5135 30 1 1.6890 2.1432 -0.0004 31 1 4.1744 2.0634 0.0010 32 1 6.0662 -1.6458 -0.0078 33 1 8.3852 -3.3173 -0.0104 34 1 7.5255 -2.8033 1.4723 35 1 6.9770 -5.4568 1.4730 36 1 8.3670 -4.7396 2.3166 37 1 8.7867 -6.7859 0.7184 38 1 9.8942 -5.3968 0.6300 39 1 8.9906 -6.3450 -1.6045 40 1 8.9442 -4.5971 -1.3706 41 1 3.5106 -6.0004 -0.5497 42 1 5.3902 -4.3679 -1.8097 43 1 6.9416 -3.5020 -1.9764 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034189757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:34 Heat of formation + Delta-G solvation = 54.078665 kcal Electronic energy + Delta-G solvation = -25730.972146 eV Core-core repulsion = 22198.801912 eV Total energy + Delta-G solvation = -3532.170234 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.16028 -39.07029 -37.26575 -34.66666 -33.89841 -33.05824 -32.58930 -30.67776 -29.81746 -28.55101 -26.13793 -25.24133 -24.09677 -23.15548 -22.68018 -20.50537 -19.72832 -18.77944 -17.65352 -17.47920 -16.51853 -15.88912 -15.40040 -15.23160 -14.80626 -14.72317 -14.20339 -13.84360 -13.63969 -13.42323 -13.28115 -13.17490 -12.75500 -12.51566 -12.35508 -12.17506 -11.77882 -11.26041 -11.19047 -11.13757 -10.66780 -10.65228 -10.58599 -10.16321 -10.06429 -9.74473 -9.71286 -9.59226 -9.46576 -9.34540 -9.29506 -9.10141 -8.40896 -8.06749 -6.56433 -5.54585 -2.98410 0.54299 1.00554 3.14273 3.29793 3.51587 3.60041 3.61851 3.97923 4.13327 4.28020 4.49174 4.68877 4.82024 4.90583 5.20391 5.33221 5.34410 5.52403 5.58554 5.63518 5.64815 5.72873 5.78424 5.91462 6.19946 6.24182 6.28201 6.38515 6.48651 6.60067 6.67605 6.91093 6.92991 7.01452 7.06410 7.14627 7.26000 7.31888 7.62226 7.71492 7.90533 8.03475 8.39467 8.60450 8.99675 9.37223 10.02891 10.55170 11.50620 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015214 B = 0.004856 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.946045 B = 5764.869021 C = 7209.086554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.170 3.830 3 C -0.225 4.225 4 C 0.144 3.856 5 N -0.503 5.503 6 C 0.301 3.699 7 C 0.557 3.443 8 O -0.448 6.448 9 N -0.710 5.710 10 C 0.130 3.870 11 H 0.131 0.869 12 C -0.122 4.122 13 C -0.105 4.105 14 C -0.144 4.144 15 C 0.157 3.843 16 N -0.580 5.580 17 C -0.276 4.276 18 H 0.066 0.934 19 C 0.011 3.989 20 N -0.861 5.861 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.292 1.292 25 C 0.157 3.843 26 N -0.471 5.471 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.148 0.852 31 H 0.171 0.829 32 H 0.393 0.607 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.051 0.949 38 H 0.042 0.958 39 H 0.032 0.968 40 H 0.026 0.974 41 H 0.262 0.738 42 H 0.094 0.906 43 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.508 16.964 3.240 17.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.022 3.978 3 C -0.247 4.247 4 C -0.022 4.022 5 N -0.221 5.221 6 C 0.031 3.969 7 C 0.335 3.665 8 O -0.314 6.314 9 N -0.364 5.364 10 C 0.027 3.973 11 H 0.148 0.852 12 C -0.160 4.160 13 C -0.143 4.143 14 C -0.186 4.186 15 C 0.028 3.972 16 N -0.301 5.301 17 C -0.406 4.406 18 H 0.084 0.916 19 C -0.191 4.191 20 N -0.503 5.503 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.220 1.220 24 H -0.218 1.218 25 C 0.032 3.968 26 N -0.186 5.186 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.166 0.834 31 H 0.189 0.811 32 H 0.227 0.773 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.050 0.950 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.112 0.888 43 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -1.704 15.216 3.263 15.655 hybrid contribution -0.789 0.823 -0.293 1.177 sum -2.493 16.039 2.971 16.501 Atomic orbital electron populations 1.20799 0.87598 1.04219 1.03780 1.21884 0.97909 0.87991 0.89979 1.22918 0.96712 1.00464 1.04583 1.23250 0.92146 0.96176 0.90599 1.68387 1.41662 0.98822 1.13186 1.23705 0.87354 0.93723 0.92147 1.17334 0.83271 0.85398 0.80516 1.91022 1.65892 1.30322 1.44173 1.46251 1.04982 1.10718 1.74436 1.21297 0.91518 0.83376 1.01154 0.85164 1.21356 0.97729 0.97648 0.99269 1.21291 1.00893 0.95585 0.96563 1.22913 0.96532 0.99288 0.99834 1.20420 0.86970 0.97827 0.91976 1.44035 1.04628 1.02779 1.78653 1.19046 0.90417 0.91333 1.39767 0.91594 1.24987 0.97841 0.97968 0.98270 1.69833 1.09774 1.36922 1.33738 0.86464 0.80344 0.81636 0.79661 1.20677 1.22023 1.21847 1.20422 0.98417 0.84856 0.93067 1.68191 1.08998 1.30033 1.11419 0.89587 0.90124 0.89546 0.83421 0.81148 0.77350 0.91921 0.92689 0.90629 0.94442 0.93024 0.93968 0.94980 0.95588 0.92640 0.88803 0.97593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.22 36.00 0.37 -0.56 16 2 C 0.17 2.13 6.82 -82.26 -0.56 1.57 16 3 C -0.22 -2.14 9.87 -39.17 -0.39 -2.53 16 4 C 0.14 1.51 11.30 -17.23 -0.19 1.32 16 5 N -0.50 -7.34 9.58 -11.13 -0.11 -7.45 16 6 C 0.30 5.40 7.59 -157.08 -1.19 4.21 16 7 C 0.56 11.78 7.77 -12.01 -0.09 11.69 16 8 O -0.45 -11.42 14.42 5.39 0.08 -11.34 16 9 N -0.71 -13.62 4.86 -57.93 -0.28 -13.90 16 10 C 0.13 2.79 1.83 -71.38 -0.13 2.65 16 11 H 0.13 3.40 4.55 -51.93 -0.24 3.16 16 12 C -0.12 -2.21 5.25 -28.40 -0.15 -2.36 16 13 C -0.11 -2.02 5.65 -27.19 -0.15 -2.17 16 14 C -0.14 -2.74 6.41 -24.76 -0.16 -2.90 16 15 C 0.16 3.32 5.18 -4.67 -0.02 3.29 16 16 N -0.58 -14.43 2.60 -175.09 -0.46 -14.88 16 17 C -0.28 -7.64 9.61 -15.06 -0.14 -7.79 16 18 H 0.07 1.83 7.90 -52.49 -0.41 1.42 16 19 C 0.01 0.31 4.86 -17.43 -0.08 0.23 16 20 N -0.86 -24.95 7.83 55.49 0.43 -24.51 16 21 Si 0.89 22.55 29.60 -169.99 -5.03 17.52 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 24 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 25 C 0.16 3.76 4.67 -5.20 -0.02 3.74 16 26 N -0.47 -8.21 10.07 -7.38 -0.07 -8.28 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.46 8.10 -51.92 -0.42 0.04 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 31 H 0.17 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.39 6.43 7.92 -40.82 -0.32 6.11 16 33 H 0.06 1.09 6.28 -51.93 -0.33 0.76 16 34 H 0.05 0.89 8.04 -51.93 -0.42 0.47 16 35 H 0.08 1.73 6.82 -51.93 -0.35 1.38 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.03 0.68 7.99 -51.93 -0.41 0.26 16 40 H 0.03 0.51 6.87 -51.93 -0.36 0.15 16 41 H 0.26 7.83 8.08 -40.82 -0.33 7.50 16 42 H 0.09 2.62 6.05 -51.93 -0.31 2.30 16 43 H 0.01 0.13 8.12 -51.93 -0.42 -0.29 16 LS Contribution 340.84 15.07 5.14 5.14 Total: -1.00 -32.89 340.84 -9.32 -42.21 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.08 Total: 5.12 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: -2.93 Total: 10.39 kcal Atomic # 7 Polarization: -68.54 SS G_CDS: -0.48 Total: -69.03 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.03 Total: 17.52 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.89 -9.32 -42.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034189757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.286 kcal (2) G-P(sol) polarization free energy of solvation -32.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds