Wall clock time and date at job start Fri Apr 10 2020 17:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38827 * 120.41454 * 2 1 4 4 C 1.38782 * 118.50539 * 180.02562 * 3 2 1 5 5 N 1.32121 * 119.16303 * 359.73191 * 4 3 2 6 6 C 1.32442 * 120.77374 * 0.54624 * 5 4 3 7 7 C 1.48539 * 119.19023 * 179.71282 * 6 5 4 8 8 O 1.21466 * 120.00106 * 179.73077 * 7 6 5 9 9 N 1.34777 * 119.99833 * 359.73557 * 7 6 5 10 10 C 1.46490 * 120.00012 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.36838 * 35.00051 * 10 9 7 12 12 C 1.50883 * 109.26723 * 154.67843 * 10 9 7 13 13 C 1.52562 * 109.36071 * 212.01513 * 12 10 9 14 14 C 1.47090 * 114.32800 * 274.98257 * 13 12 10 15 15 C 1.54869 * 110.31718 * 62.80341 * 14 13 12 16 16 N 1.44575 * 109.60262 * 288.73036 * 15 14 13 17 17 C 1.36935 * 118.64867 * 270.70633 * 16 15 14 18 18 H 1.08005 * 119.99964 * 26.52294 * 17 16 15 19 19 C 1.38815 * 120.00172 * 206.52355 * 17 16 15 20 20 N 1.31615 * 119.99788 * 15.67123 * 19 17 16 21 21 Si 1.86797 * 119.99797 * 195.67008 * 19 17 16 22 22 H 1.48499 * 109.47192 * 59.99937 * 21 19 17 23 23 H 1.48502 * 109.46769 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47399 * 299.99938 * 21 19 17 25 25 C 1.47609 * 122.70717 * 90.72913 * 16 15 14 26 26 N 1.32094 * 120.42356 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.47238 * 269.96753 * 1 2 3 28 28 H 1.08991 * 109.47723 * 29.97209 * 1 2 3 29 29 H 1.09001 * 109.46852 * 149.97500 * 1 2 3 30 30 H 1.08002 * 120.74290 * 0.02562 * 3 2 1 31 31 H 1.07997 * 120.41736 * 180.02562 * 4 3 2 32 32 H 0.97004 * 119.99735 * 359.97438 * 9 7 6 33 33 H 1.08999 * 109.48786 * 331.98496 * 12 10 9 34 34 H 1.09003 * 109.49096 * 92.04594 * 12 10 9 35 35 H 1.09006 * 108.51493 * 153.73035 * 13 12 10 36 36 H 1.08997 * 108.51446 * 36.24439 * 13 12 10 37 37 H 1.08998 * 109.33301 * 302.54465 * 14 13 12 38 38 H 1.09001 * 109.19131 * 182.97172 * 14 13 12 39 39 H 1.09001 * 109.44534 * 168.69330 * 15 14 13 40 40 H 1.09002 * 109.44976 * 48.77688 * 15 14 13 41 41 H 0.97005 * 119.99797 * 180.02562 * 20 19 17 42 42 H 1.09009 * 108.94736 * 197.18264 * 25 16 15 43 43 H 1.08998 * 108.94770 * 78.55721 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2098 1.1972 0.0000 4 6 3.5968 1.1510 -0.0005 5 7 4.2019 -0.0235 0.0044 6 6 3.5006 -1.1471 -0.0011 7 6 4.2171 -2.4482 -0.0018 8 8 3.5886 -3.4877 -0.0019 9 7 5.5646 -2.4755 -0.0023 10 6 6.2712 -3.7587 -0.0024 11 1 5.7075 -4.4817 -0.5920 12 6 7.6389 -3.5738 -0.6122 13 6 8.0482 -4.8541 -1.3339 14 6 8.6718 -5.8656 -0.4669 15 6 7.6693 -6.3388 0.6144 16 7 7.4653 -5.2839 1.5818 17 6 8.2928 -5.2231 2.6711 18 1 9.2921 -5.6288 2.6135 19 6 7.8474 -4.6400 3.8494 20 7 6.5617 -4.4268 4.0331 21 14 9.0728 -4.1579 5.1743 22 1 10.0324 -3.1671 4.6242 23 1 8.3485 -3.5591 6.3242 24 1 9.8116 -5.3636 5.6277 25 6 6.4015 -4.2700 1.4438 26 7 2.1759 -1.1391 -0.0005 27 1 -0.3634 -0.0006 1.0277 28 1 -0.3634 0.8901 -0.5133 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6888 2.1433 0.0004 31 1 4.1743 2.0636 -0.0001 32 1 6.0665 -1.6454 -0.0026 33 1 7.6115 -2.7483 -1.3233 34 1 8.3608 -3.3529 0.1741 35 1 8.7517 -4.5955 -2.1254 36 1 7.1615 -5.2911 -1.7931 37 1 9.5482 -5.4348 0.0174 38 1 8.9774 -6.7181 -1.0734 39 1 8.0671 -7.2203 1.1172 40 1 6.7184 -6.5883 0.1435 41 1 6.2504 -4.0190 4.8564 42 1 6.6282 -3.4278 2.0978 43 1 5.4523 -4.7089 1.7509 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034189758.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:37 Heat of formation + Delta-G solvation = 37.684962 kcal Electronic energy + Delta-G solvation = -25245.149528 eV Core-core repulsion = 21712.268410 eV Total energy + Delta-G solvation = -3532.881118 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.31979 -39.24588 -37.52995 -34.85421 -34.23536 -33.47699 -32.76264 -30.74392 -30.09386 -28.68400 -26.18097 -25.42007 -24.16330 -23.30256 -22.88992 -20.64584 -19.99145 -19.17136 -17.80071 -17.68072 -16.60055 -16.02397 -15.62538 -15.52496 -15.14154 -14.97646 -14.23681 -14.06189 -13.86790 -13.55866 -13.39539 -13.17234 -13.05172 -12.73179 -12.59682 -12.38812 -12.03664 -11.36904 -11.26385 -11.09600 -10.95451 -10.77570 -10.66798 -10.41111 -10.23180 -10.12338 -9.91512 -9.76100 -9.74733 -9.68257 -9.45053 -9.43930 -8.51444 -8.33202 -6.60208 -5.71655 -3.16685 0.37856 0.89018 2.83156 3.01320 3.40626 3.46580 3.47290 3.83237 3.86863 4.15784 4.29283 4.54666 4.70293 4.79516 5.08036 5.17824 5.26310 5.29457 5.38394 5.49147 5.51136 5.65260 5.68045 5.76781 5.94935 6.06965 6.11303 6.24126 6.38424 6.52522 6.64853 6.70036 6.71025 6.78092 6.82881 6.93550 7.00722 7.15419 7.40860 7.69761 7.80744 7.87912 8.03077 8.50873 8.54893 9.28602 9.95968 10.41436 11.34584 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015000 B = 0.004186 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.194304 B = 6687.553512 C = 7662.219811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.170 3.830 3 C -0.218 4.218 4 C 0.148 3.852 5 N -0.499 5.499 6 C 0.299 3.701 7 C 0.579 3.421 8 O -0.503 6.503 9 N -0.692 5.692 10 C 0.119 3.881 11 H 0.076 0.924 12 C -0.115 4.115 13 C -0.098 4.098 14 C -0.147 4.147 15 C 0.154 3.846 16 N -0.586 5.586 17 C -0.260 4.260 18 H 0.066 0.934 19 C 0.005 3.995 20 N -0.900 5.900 21 Si 0.899 3.101 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.283 1.283 25 C 0.174 3.826 26 N -0.470 5.470 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.151 0.849 31 H 0.175 0.825 32 H 0.406 0.594 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.033 0.967 41 H 0.253 0.747 42 H 0.078 0.922 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.791 12.802 -11.083 18.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.023 3.977 3 C -0.240 4.240 4 C -0.018 4.018 5 N -0.216 5.216 6 C 0.029 3.971 7 C 0.359 3.641 8 O -0.375 6.375 9 N -0.344 5.344 10 C 0.014 3.986 11 H 0.094 0.906 12 C -0.153 4.153 13 C -0.136 4.136 14 C -0.188 4.188 15 C 0.026 3.974 16 N -0.308 5.308 17 C -0.390 4.390 18 H 0.084 0.916 19 C -0.194 4.194 20 N -0.544 5.544 21 Si 0.729 3.271 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.209 1.209 25 C 0.047 3.953 26 N -0.186 5.186 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.169 0.831 31 H 0.192 0.808 32 H 0.241 0.759 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.096 0.904 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.879 11.164 -10.925 17.068 hybrid contribution 0.402 1.775 0.849 2.009 sum -6.476 12.939 -10.076 17.632 Atomic orbital electron populations 1.20810 0.87371 1.04216 1.04006 1.21891 0.97973 0.87863 0.89946 1.22972 0.96688 1.00589 1.03767 1.23282 0.92185 0.96073 0.90308 1.68332 1.41629 0.98836 1.12838 1.23153 0.87364 0.93226 0.93350 1.17207 0.82729 0.85640 0.78557 1.90808 1.66739 1.31918 1.48003 1.45962 1.04959 1.10768 1.72713 1.21896 0.91635 0.83409 1.01610 0.90600 1.21280 0.96930 0.97331 0.99805 1.20217 0.99923 0.95677 0.97803 1.21507 1.00942 0.97691 0.98649 1.20745 0.95406 0.91113 0.90143 1.43516 1.36960 1.27276 1.23003 1.19156 0.93991 1.36669 0.89165 0.91618 1.25056 0.95375 1.01978 0.96950 1.70085 1.11892 1.46430 1.25963 0.86420 0.80659 0.78592 0.81389 1.21080 1.21764 1.20879 1.21327 0.91625 0.93126 0.89178 1.68132 1.08765 1.30305 1.11410 0.89383 0.89997 0.89565 0.83126 0.80820 0.75869 0.92914 0.89916 0.93660 0.93198 0.92044 0.93440 0.93536 0.94875 0.93660 0.90373 0.94906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.22 36.00 0.37 -0.45 16 2 C 0.17 1.97 6.82 -82.26 -0.56 1.41 16 3 C -0.22 -1.92 9.87 -39.16 -0.39 -2.31 16 4 C 0.15 1.47 11.30 -17.23 -0.19 1.28 16 5 N -0.50 -7.06 9.57 -11.12 -0.11 -7.16 16 6 C 0.30 5.11 7.60 -157.07 -1.19 3.92 16 7 C 0.58 11.48 7.82 -12.01 -0.09 11.38 16 8 O -0.50 -11.74 16.52 5.40 0.09 -11.65 16 9 N -0.69 -12.67 4.96 -55.09 -0.27 -12.94 16 10 C 0.12 2.38 2.27 -68.51 -0.16 2.22 16 11 H 0.08 1.60 6.75 -51.93 -0.35 1.25 16 12 C -0.12 -2.01 5.06 -28.02 -0.14 -2.15 16 13 C -0.10 -1.60 5.15 -29.79 -0.15 -1.76 16 14 C -0.15 -2.61 5.74 -28.58 -0.16 -2.77 16 15 C 0.15 3.28 5.65 -4.08 -0.02 3.26 16 16 N -0.59 -14.67 2.27 -172.08 -0.39 -15.07 16 17 C -0.26 -7.09 9.44 -15.06 -0.14 -7.23 16 18 H 0.07 1.75 7.88 -52.48 -0.41 1.34 16 19 C 0.01 0.15 4.87 -17.43 -0.08 0.06 16 20 N -0.90 -26.73 11.01 55.49 0.61 -26.12 16 21 Si 0.90 21.85 29.58 -169.99 -5.03 16.83 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.17 4.31 4.26 -2.94 -0.01 4.29 16 26 N -0.47 -7.68 10.07 -7.37 -0.07 -7.75 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.38 8.10 -51.93 -0.42 -0.04 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 31 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.41 6.54 7.85 -40.82 -0.32 6.22 16 33 H 0.05 0.79 7.94 -51.93 -0.41 0.38 16 34 H 0.08 1.61 7.48 -51.93 -0.39 1.23 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.80 7.36 -51.93 -0.38 0.42 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 1.00 7.99 -51.93 -0.41 0.59 16 40 H 0.03 0.69 8.07 -51.93 -0.42 0.28 16 41 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.08 2.14 6.31 -51.92 -0.33 1.81 16 43 H 0.03 0.95 8.03 -51.93 -0.42 0.53 16 LS Contribution 350.26 15.07 5.28 5.28 Total: -1.00 -34.14 350.26 -9.19 -43.34 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.36 Total: 4.09 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: -2.94 Total: 11.16 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -0.23 Total: -69.04 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.14 -9.19 -43.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034189758.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.022 kcal (2) G-P(sol) polarization free energy of solvation -34.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds