Wall clock time and date at job start Fri Apr 10 2020 17:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38827 * 120.41454 * 2 1 4 4 C 1.38782 * 118.50539 * 180.02562 * 3 2 1 5 5 N 1.32121 * 119.16303 * 359.73191 * 4 3 2 6 6 C 1.32442 * 120.77374 * 0.54624 * 5 4 3 7 7 C 1.48539 * 119.19023 * 179.71282 * 6 5 4 8 8 O 1.21466 * 120.00106 * 179.73077 * 7 6 5 9 9 N 1.34777 * 119.99833 * 359.73557 * 7 6 5 10 10 C 1.46490 * 120.00012 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.36838 * 35.00051 * 10 9 7 12 12 C 1.50883 * 109.26723 * 154.67843 * 10 9 7 13 13 C 1.52562 * 109.36071 * 212.01513 * 12 10 9 14 14 C 1.47090 * 114.32800 * 274.98257 * 13 12 10 15 15 C 1.54869 * 110.31718 * 62.80341 * 14 13 12 16 16 N 1.44575 * 109.60262 * 288.73036 * 15 14 13 17 17 C 1.36935 * 118.64867 * 270.70633 * 16 15 14 18 18 H 1.08005 * 119.99964 * 26.52294 * 17 16 15 19 19 C 1.38815 * 120.00172 * 206.52355 * 17 16 15 20 20 N 1.31615 * 119.99788 * 15.67123 * 19 17 16 21 21 Si 1.86797 * 119.99797 * 195.67008 * 19 17 16 22 22 H 1.48499 * 109.47192 * 59.99937 * 21 19 17 23 23 H 1.48502 * 109.46769 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47399 * 299.99938 * 21 19 17 25 25 C 1.47609 * 122.70717 * 90.72913 * 16 15 14 26 26 N 1.32094 * 120.42356 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.47238 * 269.96753 * 1 2 3 28 28 H 1.08991 * 109.47723 * 29.97209 * 1 2 3 29 29 H 1.09001 * 109.46852 * 149.97500 * 1 2 3 30 30 H 1.08002 * 120.74290 * 0.02562 * 3 2 1 31 31 H 1.07997 * 120.41736 * 180.02562 * 4 3 2 32 32 H 0.97004 * 119.99735 * 359.97438 * 9 7 6 33 33 H 1.08999 * 109.48786 * 331.98496 * 12 10 9 34 34 H 1.09003 * 109.49096 * 92.04594 * 12 10 9 35 35 H 1.09006 * 108.51493 * 153.73035 * 13 12 10 36 36 H 1.08997 * 108.51446 * 36.24439 * 13 12 10 37 37 H 1.08998 * 109.33301 * 302.54465 * 14 13 12 38 38 H 1.09001 * 109.19131 * 182.97172 * 14 13 12 39 39 H 1.09001 * 109.44534 * 168.69330 * 15 14 13 40 40 H 1.09002 * 109.44976 * 48.77688 * 15 14 13 41 41 H 0.97005 * 119.99797 * 180.02562 * 20 19 17 42 42 H 1.09009 * 108.94736 * 197.18264 * 25 16 15 43 43 H 1.08998 * 108.94770 * 78.55721 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2098 1.1972 0.0000 4 6 3.5968 1.1510 -0.0005 5 7 4.2019 -0.0235 0.0044 6 6 3.5006 -1.1471 -0.0011 7 6 4.2171 -2.4482 -0.0018 8 8 3.5886 -3.4877 -0.0019 9 7 5.5646 -2.4755 -0.0023 10 6 6.2712 -3.7587 -0.0024 11 1 5.7075 -4.4817 -0.5920 12 6 7.6389 -3.5738 -0.6122 13 6 8.0482 -4.8541 -1.3339 14 6 8.6718 -5.8656 -0.4669 15 6 7.6693 -6.3388 0.6144 16 7 7.4653 -5.2839 1.5818 17 6 8.2928 -5.2231 2.6711 18 1 9.2921 -5.6288 2.6135 19 6 7.8474 -4.6400 3.8494 20 7 6.5617 -4.4268 4.0331 21 14 9.0728 -4.1579 5.1743 22 1 10.0324 -3.1671 4.6242 23 1 8.3485 -3.5591 6.3242 24 1 9.8116 -5.3636 5.6277 25 6 6.4015 -4.2700 1.4438 26 7 2.1759 -1.1391 -0.0005 27 1 -0.3634 -0.0006 1.0277 28 1 -0.3634 0.8901 -0.5133 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6888 2.1433 0.0004 31 1 4.1743 2.0636 -0.0001 32 1 6.0665 -1.6454 -0.0026 33 1 7.6115 -2.7483 -1.3233 34 1 8.3608 -3.3529 0.1741 35 1 8.7517 -4.5955 -2.1254 36 1 7.1615 -5.2911 -1.7931 37 1 9.5482 -5.4348 0.0174 38 1 8.9774 -6.7181 -1.0734 39 1 8.0671 -7.2203 1.1172 40 1 6.7184 -6.5883 0.1435 41 1 6.2504 -4.0190 4.8564 42 1 6.6282 -3.4278 2.0978 43 1 5.4523 -4.7089 1.7509 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034189758.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:36 Heat of formation + Delta-G solvation = 13.542495 kcal Electronic energy + Delta-G solvation = -25246.196424 eV Core-core repulsion = 21712.268410 eV Total energy + Delta-G solvation = -3533.928014 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.34801 -40.77265 -39.18448 -36.22537 -35.59708 -35.13400 -33.74629 -32.69977 -31.66336 -29.48065 -27.99893 -26.80724 -25.85915 -24.63307 -24.11924 -22.13723 -21.46896 -20.93378 -18.99083 -18.81842 -18.60040 -17.23837 -17.05540 -16.80462 -16.61333 -16.17082 -15.91316 -15.51672 -15.34795 -15.09068 -14.81704 -14.39971 -14.16505 -14.09615 -13.86933 -13.76781 -13.19014 -13.02919 -12.95941 -12.80127 -12.46409 -12.36646 -12.18186 -12.08304 -11.88781 -11.76262 -11.57036 -11.40497 -11.20790 -11.13589 -10.61787 -10.50353 -10.42246 -10.10722 -8.67720 -7.84973 -5.33969 -0.63792 0.04204 1.45077 1.47401 1.51978 1.54865 1.71819 2.51329 2.74354 2.85417 3.12394 3.28823 3.51779 3.65981 3.84833 3.90907 4.02998 4.05974 4.27890 4.29919 4.41012 4.44135 4.57079 4.60880 4.69938 4.76535 4.82719 4.94754 5.04362 5.06673 5.10299 5.29059 5.30471 5.32898 5.36432 5.44096 5.52847 5.62479 5.69039 5.76253 5.91186 6.33031 6.39370 6.87401 7.06291 7.16408 7.91661 8.33311 9.19316 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015000 B = 0.004186 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.194304 B = 6687.553512 C = 7662.219811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.147 3.853 3 C -0.183 4.183 4 C 0.139 3.861 5 N -0.509 5.509 6 C 0.267 3.733 7 C 0.572 3.428 8 O -0.554 6.554 9 N -0.683 5.683 10 C 0.134 3.866 11 H 0.064 0.936 12 C -0.106 4.106 13 C -0.100 4.100 14 C -0.132 4.132 15 C 0.144 3.856 16 N -0.599 5.599 17 C -0.263 4.263 18 H 0.074 0.926 19 C -0.052 4.052 20 N -0.940 5.940 21 Si 0.967 3.033 22 H -0.273 1.273 23 H -0.300 1.300 24 H -0.274 1.274 25 C 0.196 3.804 26 N -0.512 5.512 27 H 0.095 0.905 28 H 0.122 0.878 29 H 0.070 0.930 30 H 0.206 0.794 31 H 0.222 0.778 32 H 0.417 0.583 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.029 0.971 41 H 0.245 0.755 42 H 0.047 0.953 43 H -0.026 1.026 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.807 15.859 -12.752 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.001 3.999 3 C -0.205 4.205 4 C -0.026 4.026 5 N -0.228 5.228 6 C -0.003 4.003 7 C 0.355 3.645 8 O -0.430 6.430 9 N -0.335 5.335 10 C 0.029 3.971 11 H 0.082 0.918 12 C -0.144 4.144 13 C -0.138 4.138 14 C -0.171 4.171 15 C 0.018 3.982 16 N -0.322 5.322 17 C -0.393 4.393 18 H 0.091 0.909 19 C -0.247 4.247 20 N -0.586 5.586 21 Si 0.795 3.205 22 H -0.198 1.198 23 H -0.226 1.226 24 H -0.200 1.200 25 C 0.069 3.931 26 N -0.230 5.230 27 H 0.114 0.886 28 H 0.140 0.860 29 H 0.089 0.911 30 H 0.223 0.777 31 H 0.238 0.762 32 H 0.255 0.745 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.066 0.934 43 H -0.008 1.008 Dipole moment (debyes) X Y Z Total from point charges -5.858 14.242 -12.634 19.920 hybrid contribution -0.023 0.886 1.358 1.622 sum -5.882 15.129 -11.276 19.764 Atomic orbital electron populations 1.20950 0.84845 1.05452 1.04826 1.22667 0.99702 0.87702 0.89815 1.23555 0.96246 1.01543 0.99119 1.24179 0.93513 0.95878 0.89002 1.68265 1.42009 0.99366 1.13120 1.22356 0.87829 0.92665 0.97450 1.17805 0.82920 0.86693 0.77087 1.90754 1.67748 1.34199 1.50305 1.45833 1.04873 1.10613 1.72205 1.21522 0.93576 0.83996 0.98010 0.91816 1.21222 0.93897 0.99459 0.99823 1.20239 1.00871 0.94522 0.98137 1.21321 0.99044 0.99194 0.97591 1.20981 0.96489 0.90163 0.90565 1.43724 1.36438 1.28496 1.23531 1.19538 0.94423 1.35621 0.89733 0.90865 1.25866 0.96862 1.02603 0.99351 1.70308 1.14034 1.48019 1.26233 0.85341 0.78371 0.78484 0.78280 1.19829 1.22614 1.19950 1.20892 0.88791 0.91648 0.91770 1.68021 1.08801 1.33410 1.12719 0.88613 0.86002 0.91083 0.77732 0.76209 0.74474 0.89610 0.91878 0.90001 0.92898 0.92932 0.90272 0.94193 0.95240 0.94557 0.93429 1.00786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 10.22 71.23 0.73 -0.65 16 2 C 0.15 3.17 6.82 42.66 0.29 3.46 16 3 C -0.18 -2.49 9.87 22.54 0.22 -2.27 16 4 C 0.14 2.32 11.30 84.78 0.96 3.27 16 5 N -0.51 -14.02 9.57 -189.10 -1.81 -15.83 16 6 C 0.27 9.44 7.60 137.69 1.05 10.49 16 7 C 0.57 24.30 7.82 86.99 0.68 24.98 16 8 O -0.55 -28.21 16.52 -3.61 -0.06 -28.27 16 9 N -0.68 -26.21 4.96 -446.52 -2.21 -28.42 16 10 C 0.13 5.60 2.27 44.62 0.10 5.70 16 11 H 0.06 2.82 6.75 -2.39 -0.02 2.81 16 12 C -0.11 -3.58 5.06 29.76 0.15 -3.43 16 13 C -0.10 -3.02 5.15 28.61 0.15 -2.87 16 14 C -0.13 -4.42 5.74 29.40 0.17 -4.25 16 15 C 0.14 6.26 5.65 87.38 0.49 6.76 16 16 N -0.60 -31.24 2.27 -698.33 -1.59 -32.82 16 17 C -0.26 -14.70 9.44 84.03 0.79 -13.91 16 18 H 0.07 3.92 7.88 -2.91 -0.02 3.90 16 19 C -0.05 -3.00 4.87 84.86 0.41 -2.58 16 20 N -0.94 -59.04 11.01 21.65 0.24 -58.80 16 21 Si 0.97 45.96 29.58 68.60 2.03 47.99 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 23 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 C 0.20 10.39 4.26 86.49 0.37 10.76 16 26 N -0.51 -17.25 10.07 -177.25 -1.78 -19.03 16 27 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.12 0.61 8.10 -2.39 -0.02 0.59 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.21 0.53 8.06 -2.91 -0.02 0.50 16 31 H 0.22 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.42 13.75 7.85 -92.71 -0.73 13.02 16 33 H 0.09 2.35 7.94 -2.39 -0.02 2.33 16 34 H 0.06 2.42 7.48 -2.39 -0.02 2.40 16 35 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.05 1.60 7.36 -2.39 -0.02 1.58 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.04 1.75 7.99 -2.39 -0.02 1.73 16 40 H 0.03 1.28 8.07 -2.39 -0.02 1.26 16 41 H 0.25 15.10 8.31 -92.70 -0.77 14.33 16 42 H 0.05 2.78 6.31 -2.38 -0.02 2.77 16 43 H -0.03 -1.65 8.03 -2.39 -0.02 -1.67 16 Total: -1.00 -83.40 350.26 1.67 -81.73 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.29 Total: 18.01 kcal Atomic # 6 Polarization: 28.89 SS G_CDS: 6.56 Total: 35.45 kcal Atomic # 7 Polarization: -147.75 SS G_CDS: -7.16 Total: -154.91 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.06 Total: -28.27 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -83.40 1.67 -81.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034189758.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.274 kcal (2) G-P(sol) polarization free energy of solvation -83.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds