Wall clock time and date at job start Fri Apr 10 2020 17:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32157 * 120.53670 * 2 1 4 4 C 1.31857 * 120.96525 * 179.97438 * 3 2 1 5 5 N 1.31884 * 122.09752 * 0.02562 * 4 3 2 6 6 C 1.32127 * 120.96681 * 359.97438 * 5 4 3 7 7 C 1.39933 * 120.53527 * 180.02562 * 2 1 3 8 8 C 1.47832 * 120.94049 * 0.02585 * 7 2 1 9 9 O 1.21556 * 119.99961 * 53.77781 * 8 7 2 10 10 N 1.34780 * 119.99715 * 233.77580 * 8 7 2 11 11 C 1.46928 * 120.63057 * 5.79784 * 10 8 7 12 12 C 1.53188 * 108.77694 * 126.36498 * 11 10 8 13 13 C 1.53041 * 109.30943 * 54.63235 * 12 11 10 14 14 H 1.09008 * 109.45949 * 178.61589 * 13 12 11 15 15 N 1.46496 * 109.46095 * 58.65715 * 13 12 11 16 16 C 1.36947 * 120.00106 * 84.99817 * 15 13 12 17 17 H 1.07996 * 119.99374 * 359.97438 * 16 15 13 18 18 C 1.38805 * 119.99956 * 180.02562 * 16 15 13 19 19 N 1.31619 * 120.00315 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99861 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47107 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47383 * 120.00039 * 20 18 16 23 23 H 1.48500 * 109.47116 * 239.99958 * 20 18 16 24 24 C 1.53042 * 109.53971 * 298.63265 * 13 12 11 25 25 H 1.08991 * 109.49876 * 301.41315 * 24 13 12 26 26 C 1.53005 * 109.49424 * 181.31745 * 24 13 12 27 27 C 1.46927 * 120.62722 * 185.51511 * 10 8 7 28 28 H 1.08999 * 109.47167 * 95.07617 * 1 2 3 29 29 H 1.09000 * 109.46748 * 215.07189 * 1 2 3 30 30 H 1.08997 * 109.46969 * 335.06985 * 1 2 3 31 31 H 1.08006 * 118.94745 * 180.02562 * 4 3 2 32 32 H 1.08001 * 120.53892 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.58432 * 246.15267 * 11 10 8 34 34 H 1.09000 * 109.58307 * 6.57503 * 11 10 8 35 35 H 1.08997 * 109.49862 * 174.58765 * 12 11 10 36 36 H 1.09004 * 109.49909 * 294.68794 * 12 11 10 37 37 H 0.96999 * 120.00180 * 264.99800 * 15 13 12 38 38 H 0.96998 * 120.00386 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.47431 * 60.00689 * 26 24 13 40 40 H 1.09001 * 109.46655 * 180.02562 * 26 24 13 41 41 H 1.08996 * 109.47209 * 300.00175 * 26 24 13 42 42 H 1.08997 * 109.58847 * 353.41913 * 27 10 8 43 43 H 1.08995 * 109.58468 * 113.85148 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1481 0.0005 5 7 4.2062 0.0362 0.0005 6 6 3.6165 -1.1462 0.0006 7 6 2.2180 -1.2053 -0.0005 8 6 1.5120 -2.5041 -0.0017 9 8 0.6756 -2.7405 -0.8514 10 7 1.7960 -3.4262 0.9394 11 6 2.7096 -3.1099 2.0458 12 6 2.0069 -3.4231 3.3705 13 6 1.5183 -4.8733 3.3537 14 1 1.0395 -5.1062 4.3049 15 7 2.6585 -5.7701 3.1491 16 6 3.4124 -6.1743 4.2186 17 1 3.1665 -5.8315 5.2127 18 6 4.4930 -7.0235 4.0246 19 7 4.7929 -7.4408 2.8129 20 14 5.5217 -7.5743 5.4833 21 1 4.9811 -6.9688 6.7269 22 1 5.4744 -9.0546 5.5917 23 1 6.9276 -7.1367 5.2909 24 6 0.5114 -5.0611 2.2166 25 1 -0.3254 -4.3767 2.3550 26 6 -0.0010 -6.5028 2.2212 27 6 1.1929 -4.7648 0.8819 28 1 -0.3633 -0.0909 -1.0236 29 1 -0.3633 -0.8411 0.5905 30 1 -0.3633 0.9319 0.4332 31 1 4.0127 2.0971 0.0009 32 1 4.2040 -2.0525 0.0002 33 1 3.6120 -3.7151 1.9588 34 1 2.9717 -2.0524 2.0122 35 1 2.7061 -3.2842 4.1950 36 1 1.1558 -2.7540 3.4979 37 1 2.8795 -6.0776 2.2561 38 1 5.5479 -8.0346 2.6773 39 1 -0.4864 -6.7129 3.1743 40 1 -0.7178 -6.6362 1.4109 41 1 0.8363 -7.1865 2.0814 42 1 0.4546 -4.7988 0.0808 43 1 1.9690 -5.5076 0.6982 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035946653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:58 Heat of formation + Delta-G solvation = 24.347053 kcal Electronic energy + Delta-G solvation = -25796.994746 eV Core-core repulsion = 22263.535252 eV Total energy + Delta-G solvation = -3533.459494 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.49438 -39.81078 -37.78888 -34.75332 -34.32630 -33.25267 -32.39492 -31.49372 -29.28873 -28.94898 -26.60366 -25.61482 -24.37550 -23.51925 -23.09887 -21.74786 -20.25522 -18.48018 -18.06206 -17.41042 -17.10114 -16.93966 -16.11516 -15.20676 -14.96026 -14.49829 -14.47070 -14.06756 -13.98526 -13.75557 -13.40830 -13.34526 -13.18400 -12.94692 -12.60193 -12.49261 -12.28623 -11.76528 -11.70114 -11.46470 -11.24958 -10.97159 -10.86277 -10.78573 -10.56988 -10.52601 -10.20962 -9.92044 -9.90883 -9.62168 -9.56553 -9.48944 -8.99685 -8.38676 -7.04379 -5.85089 -3.13849 0.41475 0.82111 2.59684 3.03066 3.37731 3.44299 3.46131 3.53071 3.78714 3.93737 4.18155 4.39318 4.52522 4.77370 5.03379 5.11226 5.22102 5.25869 5.28620 5.39680 5.42890 5.50855 5.56315 5.63991 5.72110 5.78138 5.83327 5.97222 5.98462 6.12356 6.14094 6.24213 6.30086 6.42090 6.51027 6.59804 6.67980 6.69429 6.83740 6.91093 7.49431 7.64095 7.81274 8.12622 8.33370 9.45410 10.00827 10.35947 11.37283 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017328 B = 0.004387 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.533792 B = 6381.233985 C = 7327.743392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.219 3.781 3 N -0.524 5.524 4 C 0.308 3.692 5 N -0.523 5.523 6 C 0.187 3.813 7 C -0.228 4.228 8 C 0.567 3.433 9 O -0.537 6.537 10 N -0.590 5.590 11 C 0.112 3.888 12 C -0.149 4.149 13 C 0.178 3.822 14 H 0.052 0.948 15 N -0.718 5.718 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.010 4.010 19 N -0.932 5.932 20 Si 0.903 3.097 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.108 4.108 25 H 0.066 0.934 26 C -0.137 4.137 27 C 0.119 3.881 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.200 0.800 32 H 0.176 0.824 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.048 0.952 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.237 13.124 -4.374 15.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.073 3.927 3 N -0.238 5.238 4 C 0.021 3.979 5 N -0.237 5.237 6 C 0.021 3.979 7 C -0.236 4.236 8 C 0.353 3.647 9 O -0.416 6.416 10 N -0.321 5.321 11 C -0.011 4.011 12 C -0.190 4.190 13 C 0.068 3.932 14 H 0.070 0.930 15 N -0.361 5.361 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.206 4.206 19 N -0.580 5.580 20 Si 0.735 3.265 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.128 4.128 25 H 0.084 0.916 26 C -0.195 4.195 27 C -0.003 4.003 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.216 0.784 32 H 0.193 0.807 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.116 13.810 -4.643 16.214 hybrid contribution 0.602 -1.163 0.629 1.453 sum -6.514 12.647 -4.014 14.781 Atomic orbital electron populations 1.20832 0.87129 1.03927 1.04465 1.21813 0.97760 0.86635 0.86498 1.68346 1.10369 1.29549 1.15551 1.25160 0.86699 0.97303 0.88755 1.68480 1.41345 0.98898 1.14961 1.23559 0.90638 0.96817 0.86893 1.21644 0.96678 0.96290 1.08954 1.17791 0.82173 0.82860 0.81879 1.90772 1.33334 1.79143 1.38306 1.48087 1.45787 1.13141 1.25115 1.21838 0.93443 0.99846 0.85928 1.22525 0.99896 1.00174 0.96414 1.20218 0.88579 0.88766 0.95644 0.92965 1.42478 1.31116 1.54580 1.07912 1.19256 1.06727 1.22657 0.88343 0.91193 1.24691 0.99164 1.00408 0.96339 1.69648 1.30578 1.38357 1.19410 0.86179 0.80259 0.78200 0.81888 1.20639 1.21933 1.21940 1.21628 0.97996 0.97781 0.95417 0.91563 1.21664 1.01199 0.95809 1.00821 1.21650 0.98268 0.81988 0.98403 0.88749 0.89969 0.89814 0.78353 0.80737 0.89215 0.91822 0.90586 0.93335 0.78109 0.93526 0.92725 0.93690 0.90982 0.89486 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 9.26 36.01 0.33 -0.81 16 2 C 0.22 2.79 6.86 -81.82 -0.56 2.23 16 3 N -0.52 -6.39 10.36 -10.47 -0.11 -6.50 16 4 C 0.31 3.40 12.27 -92.02 -1.13 2.27 16 5 N -0.52 -6.57 10.42 -14.24 -0.15 -6.72 16 6 C 0.19 2.41 9.10 -16.78 -0.15 2.26 16 7 C -0.23 -3.09 4.62 -104.69 -0.48 -3.57 16 8 C 0.57 8.60 6.26 -12.33 -0.08 8.52 16 9 O -0.54 -9.33 15.69 5.32 0.08 -9.24 16 10 N -0.59 -8.90 2.98 -174.15 -0.52 -9.41 16 11 C 0.11 1.69 5.37 -3.71 -0.02 1.67 16 12 C -0.15 -2.35 5.78 -26.61 -0.15 -2.51 16 13 C 0.18 3.15 2.53 -67.89 -0.17 2.98 16 14 H 0.05 0.96 8.08 -51.92 -0.42 0.54 16 15 N -0.72 -15.74 3.64 -53.38 -0.19 -15.93 16 16 C -0.24 -6.02 9.93 -15.06 -0.15 -6.17 16 17 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 19 N -0.93 -26.30 13.06 55.49 0.72 -25.57 16 20 Si 0.90 21.33 29.55 -169.99 -5.02 16.31 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C -0.11 -1.66 2.66 -90.72 -0.24 -1.90 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 C -0.14 -2.07 9.05 37.16 0.34 -1.73 16 27 C 0.12 1.86 5.40 -3.93 -0.02 1.84 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.08 0.92 7.27 -51.93 -0.38 0.54 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.20 1.44 8.06 -52.48 -0.42 1.02 16 32 H 0.18 2.08 7.81 -52.49 -0.41 1.67 16 33 H 0.09 1.57 7.74 -51.93 -0.40 1.17 16 34 H 0.06 0.87 5.38 -51.93 -0.28 0.60 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.38 8.99 5.94 -40.82 -0.24 8.75 16 38 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 1.27 7.54 -51.93 -0.39 0.88 16 42 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 43 H 0.08 1.37 6.64 -51.93 -0.34 1.03 16 LS Contribution 346.21 15.07 5.22 5.22 Total: -1.00 -29.40 346.21 -8.71 -38.11 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.16 Total: 9.04 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -2.59 Total: 4.71 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: -0.25 Total: -64.14 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.24 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.40 -8.71 -38.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035946653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.456 kcal (2) G-P(sol) polarization free energy of solvation -29.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds