Wall clock time and date at job start Fri Apr 10 2020 17:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32159 * 120.54353 * 2 1 4 4 C 1.31850 * 120.96914 * 179.97438 * 3 2 1 5 5 N 1.31881 * 122.10069 * 0.02685 * 4 3 2 6 6 C 1.32136 * 120.95958 * 359.65341 * 5 4 3 7 7 C 1.39928 * 120.53292 * 179.97438 * 2 1 3 8 8 C 1.47833 * 120.94185 * 0.02562 * 7 2 1 9 9 O 1.21552 * 120.00108 * 54.69236 * 8 7 2 10 10 N 1.34779 * 120.00030 * 234.69898 * 8 7 2 11 11 C 1.46933 * 120.62750 * 355.93154 * 10 8 7 12 12 C 1.53199 * 108.77208 * 126.37586 * 11 10 8 13 13 C 1.53040 * 109.34060 * 54.61643 * 12 11 10 14 14 H 1.09003 * 109.45559 * 58.66910 * 13 12 11 15 15 N 1.46494 * 109.46137 * 178.63183 * 13 12 11 16 16 C 1.36936 * 119.99693 * 275.00303 * 15 13 12 17 17 H 1.08000 * 120.00670 * 359.97438 * 16 15 13 18 18 C 1.38813 * 119.99758 * 179.97438 * 16 15 13 19 19 N 1.31619 * 120.00177 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 120.00067 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47154 * 90.00089 * 20 18 16 22 22 H 1.48497 * 109.46942 * 210.00056 * 20 18 16 23 23 H 1.48498 * 109.46901 * 329.99914 * 20 18 16 24 24 C 1.53039 * 109.53906 * 298.68627 * 13 12 11 25 25 H 1.08997 * 109.49711 * 301.34575 * 24 13 12 26 26 C 1.53001 * 109.49634 * 181.28037 * 24 13 12 27 27 C 1.46921 * 120.63419 * 175.92043 * 10 8 7 28 28 H 1.08997 * 109.47378 * 274.40560 * 1 2 3 29 29 H 1.09009 * 109.46893 * 34.39726 * 1 2 3 30 30 H 1.08997 * 109.47254 * 154.39752 * 1 2 3 31 31 H 1.08002 * 118.94915 * 179.97438 * 4 3 2 32 32 H 1.08000 * 120.53709 * 180.31196 * 6 5 4 33 33 H 1.08992 * 109.58936 * 6.58866 * 11 10 8 34 34 H 1.09005 * 109.58721 * 246.16117 * 11 10 8 35 35 H 1.08993 * 109.49718 * 174.58617 * 12 11 10 36 36 H 1.08999 * 109.49462 * 294.65450 * 12 11 10 37 37 H 0.96994 * 120.00366 * 94.99812 * 15 13 12 38 38 H 0.97007 * 120.00174 * 179.97438 * 19 18 16 39 39 H 1.08994 * 109.47390 * 300.13384 * 26 24 13 40 40 H 1.09006 * 109.47159 * 60.12861 * 26 24 13 41 41 H 1.09002 * 109.47223 * 180.12416 * 26 24 13 42 42 H 1.09003 * 109.58415 * 353.40705 * 27 10 8 43 43 H 1.08996 * 109.59577 * 113.69199 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1382 0.0000 4 6 3.4971 1.1480 0.0005 5 7 4.2062 0.0361 0.0005 6 6 3.6163 -1.1463 0.0069 7 6 2.2179 -1.2053 0.0005 8 6 1.5119 -2.5041 0.0006 9 8 0.6874 -2.7478 -0.8587 10 7 1.7823 -3.4181 0.9535 11 6 2.8384 -3.1750 1.9457 12 6 2.2470 -3.3499 3.3481 13 6 1.5910 -4.7286 3.4532 14 1 2.3337 -5.5004 3.2506 15 7 1.0532 -4.9115 4.8035 16 6 1.8651 -5.3661 5.8081 17 1 2.9019 -5.5903 5.6049 18 6 1.3556 -5.5389 7.0877 19 7 0.0923 -5.2653 7.3355 20 14 2.4631 -6.1599 8.4580 21 1 3.1042 -5.0057 9.1377 22 1 1.6537 -6.9254 9.4399 23 1 3.5115 -7.0421 7.8857 24 6 0.4555 -4.8343 2.4327 25 1 -0.2759 -4.0480 2.6195 26 6 -0.2202 -6.2011 2.5604 27 6 1.0266 -4.6763 1.0200 28 1 -0.3634 0.0789 1.0246 29 1 -0.3633 0.8480 -0.5806 30 1 -0.3633 -0.9267 -0.4441 31 1 4.0128 2.0969 0.0001 32 1 4.2037 -2.0526 0.0119 33 1 3.2185 -2.1597 1.8334 34 1 3.6488 -3.8891 1.7992 35 1 3.0406 -3.2670 4.0905 36 1 1.4996 -2.5769 3.5266 37 1 0.1220 -4.7105 4.9860 38 1 -0.2639 -5.3865 8.2297 39 1 0.5117 -6.9870 2.3747 40 1 -0.6264 -6.3131 3.5657 41 1 -1.0275 -6.2768 1.8319 42 1 0.2113 -4.6515 0.2970 43 1 1.6886 -5.5126 0.7955 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035946654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:00 Heat of formation + Delta-G solvation = 5.368347 kcal Electronic energy + Delta-G solvation = -25409.025135 eV Core-core repulsion = 21874.742663 eV Total energy + Delta-G solvation = -3534.282472 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.52251 -40.95697 -39.06008 -36.32128 -35.49905 -34.72299 -33.60099 -32.99664 -31.09236 -29.90837 -27.77507 -26.99407 -25.88555 -24.31095 -24.07862 -23.08837 -21.55964 -20.57397 -19.10451 -19.05745 -18.29853 -17.89446 -17.37303 -16.77445 -16.24774 -15.89147 -15.74219 -15.48918 -15.31351 -14.92453 -14.88656 -14.41610 -14.19807 -14.09479 -13.90987 -13.65997 -13.28992 -13.20091 -12.96805 -12.84676 -12.82744 -12.71652 -12.46875 -12.15083 -12.09362 -11.83895 -11.71241 -11.62209 -11.16693 -11.04538 -10.88096 -10.58683 -10.43955 -9.77048 -8.96335 -7.90885 -5.18299 -0.53952 -0.13659 1.37060 1.49596 1.49678 1.57961 1.83000 2.57101 2.58782 2.92553 3.04613 3.22392 3.27219 3.42849 3.76155 3.78236 3.82821 3.95955 4.04805 4.22205 4.28035 4.35192 4.36954 4.49145 4.53073 4.63765 4.69880 4.75777 4.78390 4.82077 4.93042 4.95946 5.02035 5.17644 5.24246 5.28783 5.39859 5.48511 5.56392 5.61283 5.74258 6.21292 6.30766 6.88811 6.90309 7.37558 8.13830 8.36240 9.32637 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018298 B = 0.003779 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.870160 B = 7408.568447 C = 8100.874130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.214 3.786 3 N -0.535 5.535 4 C 0.312 3.688 5 N -0.533 5.533 6 C 0.189 3.811 7 C -0.248 4.248 8 C 0.576 3.424 9 O -0.560 6.560 10 N -0.593 5.593 11 C 0.111 3.889 12 C -0.142 4.142 13 C 0.179 3.821 14 H 0.053 0.947 15 N -0.732 5.732 16 C -0.231 4.231 17 H 0.079 0.921 18 C -0.075 4.075 19 N -0.971 5.971 20 Si 0.965 3.035 21 H -0.291 1.291 22 H -0.301 1.301 23 H -0.268 1.268 24 C -0.100 4.100 25 H 0.053 0.947 26 C -0.130 4.130 27 C 0.128 3.872 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.234 0.766 32 H 0.198 0.802 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.370 0.630 38 H 0.248 0.752 39 H 0.060 0.940 40 H 0.039 0.961 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.482 8.131 -17.089 20.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.068 3.932 3 N -0.250 5.250 4 C 0.026 3.974 5 N -0.246 5.246 6 C 0.022 3.978 7 C -0.256 4.256 8 C 0.363 3.637 9 O -0.440 6.440 10 N -0.324 5.324 11 C -0.012 4.012 12 C -0.183 4.183 13 C 0.071 3.929 14 H 0.071 0.929 15 N -0.370 5.370 16 C -0.362 4.362 17 H 0.097 0.903 18 C -0.267 4.267 19 N -0.622 5.622 20 Si 0.795 3.205 21 H -0.218 1.218 22 H -0.228 1.228 23 H -0.192 1.192 24 C -0.120 4.120 25 H 0.072 0.928 26 C -0.188 4.188 27 C 0.005 3.995 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.250 0.750 32 H 0.214 0.786 33 H 0.106 0.894 34 H 0.120 0.880 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.202 0.798 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.690 8.785 -17.450 20.650 hybrid contribution -0.529 -0.896 1.470 1.801 sum 6.160 7.888 -15.980 18.856 Atomic orbital electron populations 1.21032 0.86784 1.05455 1.04536 1.22039 0.98449 0.86909 0.85807 1.68436 1.11135 1.29289 1.16096 1.25904 0.86399 0.98433 0.86685 1.68580 1.41327 0.99139 1.15602 1.23858 0.90027 0.97727 0.86178 1.21529 0.97407 0.95481 1.11156 1.17930 0.81573 0.82976 0.81189 1.90750 1.35897 1.79131 1.38180 1.48130 1.36507 1.18543 1.29200 1.22061 0.89595 1.02978 0.86567 1.22482 1.00428 0.99499 0.95914 1.20439 0.94070 0.94332 0.84103 0.92874 1.42589 1.10525 1.78734 1.05189 1.19603 0.93586 1.33855 0.89201 0.90336 1.25456 0.97330 1.03940 0.99952 1.69815 1.14396 1.57197 1.20782 0.85253 0.78001 0.77707 0.79502 1.21843 1.22801 1.19233 1.21614 0.97446 0.98483 0.94471 0.92827 1.21573 1.00382 0.95533 1.01286 1.21717 0.96685 0.84862 0.96202 0.88898 0.88227 0.89546 0.74976 0.78578 0.89435 0.88014 0.91535 0.94105 0.79795 0.94316 0.92107 0.94218 0.91529 0.89092 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 9.93 71.24 0.71 -1.85 16 2 C 0.21 4.97 6.86 42.92 0.29 5.26 16 3 N -0.53 -11.63 10.36 -187.07 -1.94 -13.57 16 4 C 0.31 5.56 12.27 180.84 2.22 7.78 16 5 N -0.53 -10.24 10.42 -198.97 -2.07 -12.31 16 6 C 0.19 3.55 8.76 85.07 0.74 4.29 16 7 C -0.25 -5.63 4.89 -19.91 -0.10 -5.73 16 8 C 0.58 14.69 6.64 86.78 0.58 15.27 16 9 O -0.56 -17.22 14.67 -3.88 -0.06 -17.28 16 10 N -0.59 -14.03 2.97 -822.31 -2.44 -16.47 16 11 C 0.11 2.40 5.60 86.36 0.48 2.88 16 12 C -0.14 -4.36 5.66 30.67 0.17 -4.18 16 13 C 0.18 6.23 2.19 45.02 0.10 6.33 16 14 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 15 N -0.73 -34.20 4.41 -322.82 -1.42 -35.63 16 16 C -0.23 -12.00 9.93 84.03 0.83 -11.16 16 17 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 18 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 19 N -0.97 -58.06 13.06 21.65 0.28 -57.78 16 20 Si 0.97 44.76 29.55 68.60 2.03 46.79 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 24 C -0.10 -2.98 2.46 -10.71 -0.03 -3.01 16 25 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 26 C -0.13 -3.87 9.02 71.98 0.65 -3.22 16 27 C 0.13 3.08 5.71 86.36 0.49 3.58 16 28 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.09 2.07 5.75 -2.39 -0.01 2.06 16 31 H 0.23 2.27 8.06 -2.91 -0.02 2.24 16 32 H 0.20 2.60 7.46 -2.91 -0.02 2.58 16 33 H 0.09 1.71 4.75 -2.39 -0.01 1.70 16 34 H 0.10 1.74 8.14 -2.38 -0.02 1.73 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.37 19.21 7.51 -92.71 -0.70 18.51 16 38 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.04 1.46 7.37 -2.38 -0.02 1.45 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.09 2.28 7.03 -2.39 -0.02 2.26 16 43 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -67.08 347.61 2.32 -64.75 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.33 Total: 28.92 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 7.62 Total: 12.58 kcal Atomic # 7 Polarization: -128.16 SS G_CDS: -7.60 Total: -135.76 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.06 Total: -17.28 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -67.08 2.32 -64.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035946654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.123 kcal (2) G-P(sol) polarization free energy of solvation -67.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds