Wall clock time and date at job start Fri Apr 10 2020 17:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38569 * 119.96219 * 2 1 4 4 C 1.38824 * 118.06327 * 179.70849 * 3 2 1 5 5 C 1.39717 * 117.90186 * 0.52187 * 4 3 2 6 6 C 1.48151 * 120.18519 * 179.74268 * 5 4 3 7 7 O 1.21517 * 120.00037 * 350.84974 * 6 5 4 8 8 N 1.34781 * 119.99952 * 170.85548 * 6 5 4 9 9 C 1.46917 * 120.63002 * 352.38449 * 8 6 5 10 10 C 1.53187 * 108.77660 * 233.62933 * 9 8 6 11 11 C 1.53040 * 109.31631 * 305.36686 * 10 9 8 12 12 H 1.09000 * 109.46409 * 181.36850 * 11 10 9 13 13 N 1.46494 * 109.46023 * 301.34304 * 11 10 9 14 14 C 1.36931 * 120.00465 * 274.99742 * 13 11 10 15 15 H 1.08005 * 119.99702 * 359.97438 * 14 13 11 16 16 C 1.38806 * 120.00593 * 179.97438 * 14 13 11 17 17 N 1.31618 * 120.00061 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 120.00390 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46702 * 90.00032 * 18 16 14 20 20 H 1.48498 * 109.47307 * 210.00197 * 18 16 14 21 21 H 1.48501 * 109.46629 * 330.00578 * 18 16 14 22 22 C 1.53352 * 109.60594 * 61.37227 * 11 10 9 23 23 H 1.09004 * 109.47533 * 58.55068 * 22 11 10 24 24 C 1.52996 * 109.68503 * 178.74988 * 22 11 10 25 25 C 1.46926 * 120.62687 * 172.40834 * 8 6 5 26 26 N 1.32789 * 119.62953 * 359.46872 * 5 4 3 27 27 N 1.28341 * 122.03021 * 0.27043 * 26 5 4 28 28 H 1.09000 * 109.46965 * 270.01868 * 1 2 3 29 29 H 1.09005 * 109.47024 * 30.02408 * 1 2 3 30 30 H 1.09000 * 109.47098 * 150.02233 * 1 2 3 31 31 H 1.07996 * 120.97108 * 359.97438 * 3 2 1 32 32 H 1.08008 * 121.04859 * 180.28870 * 4 3 2 33 33 H 1.08995 * 109.58906 * 353.42156 * 9 8 6 34 34 H 1.09001 * 109.58851 * 113.70445 * 9 8 6 35 35 H 1.09000 * 109.49946 * 65.32154 * 10 9 8 36 36 H 1.09004 * 109.50106 * 185.38184 * 10 9 8 37 37 H 0.97011 * 119.99918 * 94.99456 * 13 11 10 38 38 H 0.97001 * 120.00643 * 179.97438 * 17 16 14 39 39 H 1.09006 * 109.47231 * 179.75060 * 24 22 11 40 40 H 1.09001 * 109.46961 * 299.74823 * 24 22 11 41 41 H 1.08993 * 109.47231 * 59.75306 * 24 22 11 42 42 H 1.08999 * 109.58772 * 246.15366 * 25 8 6 43 43 H 1.09001 * 109.58974 * 6.44018 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5866 1.1545 0.0062 5 6 4.1992 -0.1012 0.0009 6 6 5.6767 -0.2092 0.0014 7 8 6.3586 0.7835 -0.1610 8 7 6.2647 -1.4085 0.1818 9 6 5.4656 -2.5870 0.5438 10 6 6.0624 -3.2187 1.8054 11 6 7.5458 -3.5130 1.5710 12 1 7.9671 -3.9849 2.4587 13 7 7.6895 -4.4138 0.4247 14 6 7.5835 -5.7677 0.6002 15 1 7.3944 -6.1715 1.5838 16 6 7.7192 -6.6211 -0.4861 17 7 7.9502 -6.1291 -1.6848 18 14 7.5753 -8.4682 -0.2465 19 1 6.1587 -8.8803 -0.4159 20 1 8.4171 -9.1649 -1.2521 21 1 8.0355 -8.8275 1.1189 22 6 8.2917 -2.2035 1.2875 23 1 8.1644 -1.5231 2.1296 24 6 9.7803 -2.4919 1.0837 25 6 7.7170 -1.5619 0.0206 26 7 3.4496 -1.1973 0.0009 27 7 2.1673 -1.1450 0.0005 28 1 -0.3633 0.0003 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6744 2.1444 -0.0004 32 1 4.1740 2.0609 0.0112 33 1 4.4365 -2.2851 0.7381 34 1 5.4868 -3.3080 -0.2734 35 1 5.9561 -2.5291 2.6427 36 1 5.5379 -4.1475 2.0302 37 1 7.8598 -4.0511 -0.4588 38 1 8.0454 -6.7255 -2.4439 39 1 10.3063 -1.5596 0.8782 40 1 10.1887 -2.9483 1.9854 41 1 9.9065 -3.1733 0.2425 42 1 7.9239 -2.2004 -0.8383 43 1 8.1730 -0.5839 -0.1329 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036028496.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:41 Heat of formation + Delta-G solvation = 50.381410 kcal Electronic energy + Delta-G solvation = -25476.024524 eV Core-core repulsion = 21943.693965 eV Total energy + Delta-G solvation = -3532.330559 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.47984 -39.69550 -37.68366 -34.74441 -33.91270 -33.27252 -32.66063 -31.33059 -29.14129 -28.92974 -26.26684 -25.59710 -24.56292 -23.44374 -23.16909 -21.58144 -20.56829 -18.55294 -17.99221 -17.25467 -16.89552 -16.09337 -15.80617 -15.65536 -14.90109 -14.67136 -14.40785 -14.14938 -13.95997 -13.53759 -13.45489 -13.24287 -13.16432 -12.93943 -12.69117 -12.48041 -12.28743 -11.72502 -11.41231 -11.18305 -11.04960 -10.85278 -10.71291 -10.59379 -10.43815 -10.42363 -10.14052 -9.97366 -9.87802 -9.77748 -9.51109 -9.28397 -8.80176 -8.20859 -6.90688 -5.73087 -3.01011 0.28114 0.53092 2.62377 3.03705 3.46354 3.49074 3.51844 3.52994 3.70131 4.12128 4.27739 4.39762 4.62902 4.65431 4.71514 5.10459 5.17256 5.24065 5.37488 5.41455 5.46901 5.52276 5.69645 5.71257 5.72144 5.84015 5.88585 5.96639 6.04710 6.11961 6.19989 6.32361 6.47477 6.54081 6.60374 6.70337 6.84982 6.85778 7.02605 7.07143 7.65519 7.74407 8.15419 8.42042 8.45421 9.57024 10.14091 10.49242 11.49504 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.004256 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.855644 B = 6576.893411 C = 7810.784242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.080 3.920 3 C -0.125 4.125 4 C -0.064 4.064 5 C 0.025 3.975 6 C 0.568 3.432 7 O -0.546 6.546 8 N -0.573 5.573 9 C 0.083 3.917 10 C -0.149 4.149 11 C 0.177 3.823 12 H 0.050 0.950 13 N -0.718 5.718 14 C -0.235 4.235 15 H 0.069 0.931 16 C -0.012 4.012 17 N -0.933 5.933 18 Si 0.904 3.096 19 H -0.291 1.291 20 H -0.293 1.293 21 H -0.283 1.283 22 C -0.107 4.107 23 H 0.065 0.935 24 C -0.137 4.137 25 C 0.116 3.884 26 N -0.190 5.190 27 N -0.247 5.247 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.126 0.874 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.043 0.957 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.498 16.254 4.979 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.063 4.063 3 C -0.153 4.153 4 C -0.093 4.093 5 C -0.121 4.121 6 C 0.352 3.648 7 O -0.424 6.424 8 N -0.302 5.302 9 C -0.039 4.039 10 C -0.191 4.191 11 C 0.067 3.933 12 H 0.068 0.932 13 N -0.360 5.360 14 C -0.367 4.367 15 H 0.087 0.913 16 C -0.207 4.207 17 N -0.581 5.581 18 Si 0.735 3.265 19 H -0.218 1.218 20 H -0.220 1.220 21 H -0.209 1.209 22 C -0.127 4.127 23 H 0.084 0.916 24 C -0.195 4.195 25 C -0.006 4.006 26 N -0.035 5.035 27 N -0.090 5.090 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.173 0.827 32 H 0.179 0.821 33 H 0.143 0.857 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.219 0.781 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.166 14.926 4.933 19.282 hybrid contribution 0.019 0.460 -0.206 0.504 sum -11.147 15.386 4.727 19.579 Atomic orbital electron populations 1.20740 0.87194 1.04335 1.03843 1.23088 0.99307 0.90550 0.93387 1.22300 0.94224 1.00089 0.98726 1.22411 0.94999 0.99087 0.92781 1.22986 0.96767 0.91966 1.00362 1.17585 0.85084 0.83770 0.78337 1.90750 1.63494 1.36118 1.52072 1.48058 1.08863 1.08595 1.64685 1.22859 0.96396 0.86087 0.98587 1.22543 1.00512 0.99998 0.95999 1.20296 0.91602 0.89097 0.92305 0.93242 1.42454 1.85775 1.02390 1.05405 1.19217 1.40823 0.82723 0.93892 0.91281 1.24684 1.02899 0.97694 0.95470 1.69647 1.56171 1.33705 0.98608 0.86242 0.77401 0.85961 0.76886 1.21811 1.21952 1.20895 1.21752 0.96174 0.97824 0.96990 0.91630 1.21658 0.94003 1.00776 1.03015 1.21779 0.78407 1.01624 0.98808 1.73411 0.99137 1.24563 1.06392 1.73202 1.01598 1.24700 1.09531 0.89538 0.90109 0.89578 0.82661 0.82061 0.85733 0.89644 0.93814 0.90679 0.78143 0.93600 0.93762 0.92766 0.90988 0.90180 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 10.19 36.01 0.37 -0.25 16 2 C 0.08 0.80 6.87 -82.32 -0.57 0.23 16 3 C -0.12 -1.05 9.86 -39.24 -0.39 -1.44 16 4 C -0.06 -0.70 9.73 -38.81 -0.38 -1.08 16 5 C 0.02 0.36 6.67 -82.83 -0.55 -0.19 16 6 C 0.57 9.68 7.66 -12.19 -0.09 9.59 16 7 O -0.55 -10.06 15.86 5.35 0.08 -9.97 16 8 N -0.57 -10.10 2.97 -173.77 -0.52 -10.62 16 9 C 0.08 1.51 5.65 -3.72 -0.02 1.49 16 10 C -0.15 -2.71 5.78 -26.61 -0.15 -2.86 16 11 C 0.18 3.46 2.54 -67.73 -0.17 3.29 16 12 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 13 N -0.72 -17.06 3.65 -53.23 -0.19 -17.26 16 14 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 15 H 0.07 1.82 7.83 -52.48 -0.41 1.40 16 16 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 17 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 18 Si 0.90 22.26 29.55 -169.99 -5.02 17.23 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C -0.11 -1.83 2.69 -90.34 -0.24 -2.07 16 23 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 24 C -0.14 -2.24 9.07 37.16 0.34 -1.90 16 25 C 0.12 2.04 5.42 -3.71 -0.02 2.02 16 26 N -0.19 -2.97 7.33 33.32 0.24 -2.72 16 27 N -0.25 -3.44 11.43 33.63 0.38 -3.06 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.29 8.09 -51.93 -0.42 -0.13 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.16 0.67 8.06 -52.49 -0.42 0.25 16 32 H 0.16 1.53 7.75 -52.48 -0.41 1.12 16 33 H 0.13 2.18 4.00 -133.25 -0.53 1.65 16 34 H 0.09 1.82 7.74 -51.93 -0.40 1.42 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.38 9.73 5.93 -40.82 -0.24 9.49 16 38 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.36 7.55 -51.93 -0.39 0.97 16 42 H 0.08 1.55 6.64 -51.93 -0.34 1.20 16 43 H 0.08 1.45 7.00 -51.93 -0.36 1.08 16 LS Contribution 346.69 15.07 5.22 5.22 Total: -1.00 -31.83 346.69 -7.65 -39.48 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.45 Total: 8.67 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -2.13 Total: -0.05 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.64 Total: -60.58 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.83 -7.65 -39.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036028496.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.858 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds