Wall clock time and date at job start Fri Apr 10 2020 17:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38569 * 119.96219 * 2 1 4 4 C 1.38824 * 118.06327 * 179.70849 * 3 2 1 5 5 C 1.39717 * 117.90186 * 0.52187 * 4 3 2 6 6 C 1.48151 * 120.18519 * 179.74268 * 5 4 3 7 7 O 1.21517 * 120.00037 * 350.84974 * 6 5 4 8 8 N 1.34781 * 119.99952 * 170.85548 * 6 5 4 9 9 C 1.46917 * 120.63002 * 352.38449 * 8 6 5 10 10 C 1.53187 * 108.77660 * 233.62933 * 9 8 6 11 11 C 1.53040 * 109.31631 * 305.36686 * 10 9 8 12 12 H 1.09000 * 109.46409 * 181.36850 * 11 10 9 13 13 N 1.46494 * 109.46023 * 301.34304 * 11 10 9 14 14 C 1.36931 * 120.00465 * 274.99742 * 13 11 10 15 15 H 1.08005 * 119.99702 * 359.97438 * 14 13 11 16 16 C 1.38806 * 120.00593 * 179.97438 * 14 13 11 17 17 N 1.31618 * 120.00061 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 120.00390 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46702 * 90.00032 * 18 16 14 20 20 H 1.48498 * 109.47307 * 210.00197 * 18 16 14 21 21 H 1.48501 * 109.46629 * 330.00578 * 18 16 14 22 22 C 1.53352 * 109.60594 * 61.37227 * 11 10 9 23 23 H 1.09004 * 109.47533 * 58.55068 * 22 11 10 24 24 C 1.52996 * 109.68503 * 178.74988 * 22 11 10 25 25 C 1.46926 * 120.62687 * 172.40834 * 8 6 5 26 26 N 1.32789 * 119.62953 * 359.46872 * 5 4 3 27 27 N 1.28341 * 122.03021 * 0.27043 * 26 5 4 28 28 H 1.09000 * 109.46965 * 270.01868 * 1 2 3 29 29 H 1.09005 * 109.47024 * 30.02408 * 1 2 3 30 30 H 1.09000 * 109.47098 * 150.02233 * 1 2 3 31 31 H 1.07996 * 120.97108 * 359.97438 * 3 2 1 32 32 H 1.08008 * 121.04859 * 180.28870 * 4 3 2 33 33 H 1.08995 * 109.58906 * 353.42156 * 9 8 6 34 34 H 1.09001 * 109.58851 * 113.70445 * 9 8 6 35 35 H 1.09000 * 109.49946 * 65.32154 * 10 9 8 36 36 H 1.09004 * 109.50106 * 185.38184 * 10 9 8 37 37 H 0.97011 * 119.99918 * 94.99456 * 13 11 10 38 38 H 0.97001 * 120.00643 * 179.97438 * 17 16 14 39 39 H 1.09006 * 109.47231 * 179.75060 * 24 22 11 40 40 H 1.09001 * 109.46961 * 299.74823 * 24 22 11 41 41 H 1.08993 * 109.47231 * 59.75306 * 24 22 11 42 42 H 1.08999 * 109.58772 * 246.15366 * 25 8 6 43 43 H 1.09001 * 109.58974 * 6.44018 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5866 1.1545 0.0062 5 6 4.1992 -0.1012 0.0009 6 6 5.6767 -0.2092 0.0014 7 8 6.3586 0.7835 -0.1610 8 7 6.2647 -1.4085 0.1818 9 6 5.4656 -2.5870 0.5438 10 6 6.0624 -3.2187 1.8054 11 6 7.5458 -3.5130 1.5710 12 1 7.9671 -3.9849 2.4587 13 7 7.6895 -4.4138 0.4247 14 6 7.5835 -5.7677 0.6002 15 1 7.3944 -6.1715 1.5838 16 6 7.7192 -6.6211 -0.4861 17 7 7.9502 -6.1291 -1.6848 18 14 7.5753 -8.4682 -0.2465 19 1 6.1587 -8.8803 -0.4159 20 1 8.4171 -9.1649 -1.2521 21 1 8.0355 -8.8275 1.1189 22 6 8.2917 -2.2035 1.2875 23 1 8.1644 -1.5231 2.1296 24 6 9.7803 -2.4919 1.0837 25 6 7.7170 -1.5619 0.0206 26 7 3.4496 -1.1973 0.0009 27 7 2.1673 -1.1450 0.0005 28 1 -0.3633 0.0003 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6744 2.1444 -0.0004 32 1 4.1740 2.0609 0.0112 33 1 4.4365 -2.2851 0.7381 34 1 5.4868 -3.3080 -0.2734 35 1 5.9561 -2.5291 2.6427 36 1 5.5379 -4.1475 2.0302 37 1 7.8598 -4.0511 -0.4588 38 1 8.0454 -6.7255 -2.4439 39 1 10.3063 -1.5596 0.8782 40 1 10.1887 -2.9483 1.9854 41 1 9.9065 -3.1733 0.2425 42 1 7.9239 -2.2004 -0.8383 43 1 8.1730 -0.5839 -0.1329 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036028496.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:41 Heat of formation + Delta-G solvation = 29.772223 kcal Electronic energy + Delta-G solvation = -25476.918206 eV Core-core repulsion = 21943.693965 eV Total energy + Delta-G solvation = -3533.224240 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.48449 -41.00911 -39.15293 -36.08240 -35.20274 -34.30427 -34.09385 -32.99320 -30.95048 -29.75736 -27.55105 -26.92476 -25.89040 -25.18595 -24.10772 -23.06741 -21.80107 -20.01860 -19.29915 -19.08022 -18.04586 -17.20257 -16.90362 -16.81367 -16.49315 -16.04398 -15.86568 -15.53865 -15.34290 -14.89172 -14.73444 -14.50392 -14.24330 -14.23015 -13.76890 -13.62613 -13.23304 -13.03441 -12.99713 -12.86135 -12.69968 -12.48168 -12.33370 -12.10724 -11.94579 -11.88063 -11.59273 -11.34265 -11.18723 -11.08158 -10.91977 -10.81985 -10.34094 -9.67727 -8.91366 -7.88059 -5.14343 -0.65341 -0.29782 1.47620 1.49022 1.50169 1.57814 1.78055 2.46992 2.60251 2.69778 3.25567 3.40600 3.45802 3.60606 3.78369 3.84142 3.88194 3.99603 4.09622 4.12390 4.39146 4.45278 4.49050 4.56969 4.62778 4.66589 4.75403 4.78952 4.87394 4.95233 5.00352 5.04529 5.11272 5.14284 5.22416 5.28382 5.30529 5.43135 5.47933 5.59194 5.63870 6.27774 6.33579 6.82549 7.40872 7.46852 8.16930 8.40946 9.35405 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.004256 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.855644 B = 6576.893411 C = 7810.784242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.081 3.919 3 C -0.098 4.098 4 C -0.067 4.067 5 C 0.000 4.000 6 C 0.568 3.432 7 O -0.562 6.562 8 N -0.579 5.579 9 C 0.095 3.905 10 C -0.142 4.142 11 C 0.172 3.828 12 H 0.049 0.951 13 N -0.724 5.724 14 C -0.228 4.228 15 H 0.074 0.926 16 C -0.073 4.073 17 N -0.969 5.969 18 Si 0.965 3.035 19 H -0.292 1.292 20 H -0.300 1.300 21 H -0.270 1.270 22 C -0.097 4.097 23 H 0.087 0.913 24 C -0.130 4.130 25 C 0.120 3.880 26 N -0.225 5.225 27 N -0.283 5.283 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.209 0.791 32 H 0.178 0.822 33 H 0.139 0.861 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.373 0.627 38 H 0.247 0.753 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.039 0.961 42 H 0.053 0.947 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.431 18.606 6.543 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.062 4.062 3 C -0.127 4.127 4 C -0.095 4.095 5 C -0.146 4.146 6 C 0.354 3.646 7 O -0.442 6.442 8 N -0.308 5.308 9 C -0.027 4.027 10 C -0.183 4.183 11 C 0.063 3.937 12 H 0.067 0.933 13 N -0.365 5.365 14 C -0.360 4.360 15 H 0.092 0.908 16 C -0.265 4.265 17 N -0.621 5.621 18 Si 0.795 3.205 19 H -0.219 1.219 20 H -0.227 1.227 21 H -0.195 1.195 22 C -0.117 4.117 23 H 0.105 0.895 24 C -0.188 4.188 25 C -0.002 4.002 26 N -0.069 5.069 27 N -0.126 5.126 28 H 0.122 0.878 29 H 0.133 0.867 30 H 0.096 0.904 31 H 0.226 0.774 32 H 0.195 0.805 33 H 0.156 0.844 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.206 0.794 38 H 0.056 0.944 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.112 17.289 6.548 22.665 hybrid contribution 0.470 -0.117 -0.669 0.826 sum -12.642 17.172 5.879 22.119 Atomic orbital electron populations 1.20928 0.84115 1.05653 1.05240 1.23821 1.01220 0.90070 0.91104 1.22857 0.92960 1.01549 0.95310 1.22673 0.96462 0.97988 0.92382 1.22777 0.95275 0.93629 1.02883 1.17950 0.86351 0.83053 0.77230 1.90720 1.64368 1.36391 1.52697 1.48056 1.08666 1.08805 1.65298 1.22663 0.97564 0.85554 0.96947 1.22428 0.99018 1.00007 0.96804 1.20511 0.92869 0.89653 0.90655 0.93327 1.42562 1.85619 1.02095 1.06192 1.19580 1.38452 0.84161 0.93847 0.90769 1.25398 1.04119 1.01600 0.95395 1.69810 1.58437 1.34615 0.99216 0.85257 0.76878 0.81333 0.77010 1.21944 1.22696 1.19512 1.21677 0.96117 0.96579 0.97324 0.89467 1.21588 0.93866 1.01326 1.01993 1.21668 0.78977 1.01400 0.98200 1.73130 1.00274 1.25629 1.07904 1.73111 1.00894 1.27198 1.11417 0.87847 0.86684 0.90393 0.77415 0.80490 0.84434 0.93801 0.91325 0.91938 0.79362 0.94402 0.91280 0.92043 0.94138 0.92826 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 10.19 71.24 0.73 -0.11 16 2 C 0.08 1.39 6.87 42.59 0.29 1.68 16 3 C -0.10 -1.25 9.86 22.49 0.22 -1.03 16 4 C -0.07 -1.31 9.73 22.77 0.22 -1.09 16 5 C 0.00 0.01 6.67 41.99 0.28 0.29 16 6 C 0.57 19.41 7.66 86.88 0.67 20.07 16 7 O -0.56 -20.45 15.86 -3.77 -0.06 -20.51 16 8 N -0.58 -20.86 2.97 -821.98 -2.44 -23.30 16 9 C 0.10 3.61 5.65 86.36 0.49 4.10 16 10 C -0.14 -5.17 5.78 30.67 0.18 -4.99 16 11 C 0.17 6.76 2.54 45.12 0.11 6.88 16 12 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 13 N -0.72 -35.60 3.65 -322.33 -1.18 -36.77 16 14 C -0.23 -12.50 9.93 84.03 0.83 -11.66 16 15 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 16 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 17 N -0.97 -59.73 13.06 21.65 0.28 -59.44 16 18 Si 0.96 46.77 29.55 68.60 2.03 48.79 16 19 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 20 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 22 C -0.10 -3.27 2.69 -10.61 -0.03 -3.30 16 23 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 24 C -0.13 -4.20 9.07 71.98 0.65 -3.55 16 25 C 0.12 4.31 5.42 86.36 0.47 4.77 16 26 N -0.22 -7.08 7.33 -48.49 -0.36 -7.44 16 27 N -0.28 -7.71 11.43 -47.53 -0.54 -8.25 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.11 0.20 8.09 -2.38 -0.02 0.18 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.21 0.42 8.06 -2.91 -0.02 0.39 16 32 H 0.18 2.85 7.75 -2.91 -0.02 2.82 16 33 H 0.14 4.98 4.00 -107.58 -0.43 4.55 16 34 H 0.04 2.00 7.74 -2.39 -0.02 1.99 16 35 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.37 19.97 5.93 -92.70 -0.55 19.42 16 38 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 39 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.04 1.56 7.55 -2.39 -0.02 1.54 16 42 H 0.05 2.20 6.64 -2.39 -0.02 2.19 16 43 H 0.09 3.17 7.00 -2.39 -0.02 3.15 16 Total: -1.00 -72.61 346.69 3.37 -69.24 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.06 Total: 29.34 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 5.58 Total: 8.34 kcal Atomic # 7 Polarization: -130.97 SS G_CDS: -4.24 Total: -135.21 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.06 Total: -20.51 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -72.61 3.37 -69.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036028496.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.010 kcal (2) G-P(sol) polarization free energy of solvation -72.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds