Wall clock time and date at job start Fri Apr 10 2020 17:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30858 * 125.41662 * 2 1 4 4 C 1.33324 * 109.68638 * 179.73996 * 3 2 1 5 5 C 1.36667 * 107.78331 * 0.37865 * 4 3 2 6 6 C 1.46761 * 126.84110 * 179.89286 * 5 4 3 7 7 O 1.21684 * 120.00244 * 0.71333 * 6 5 4 8 8 N 1.34782 * 119.99590 * 180.71496 * 6 5 4 9 9 C 1.44222 * 115.76291 * 354.56649 * 8 6 5 10 10 C 1.51801 * 112.77918 * 185.98367 * 9 8 6 11 11 C 1.50988 * 112.00762 * 324.62758 * 10 9 8 12 12 H 1.08996 * 108.32777 * 180.08663 * 11 10 9 13 13 C 1.53989 * 111.97281 * 59.88557 * 11 10 9 14 14 H 1.08997 * 112.96483 * 75.44602 * 13 11 10 15 15 C 1.56264 * 99.75452 * 195.21835 * 13 11 10 16 16 C 1.54652 * 102.20554 * 38.88274 * 15 13 11 17 17 N 1.46670 * 113.21091 * 301.07611 * 11 10 9 18 18 C 1.36933 * 126.19695 * 330.15014 * 17 11 10 19 19 H 1.07989 * 120.00447 * 359.97097 * 18 17 11 20 20 C 1.38814 * 119.99558 * 179.97438 * 18 17 11 21 21 N 1.31615 * 120.00346 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99906 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46626 * 59.99741 * 22 20 18 24 24 H 1.48496 * 109.47188 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47095 * 300.00102 * 22 20 18 26 26 C 1.43522 * 115.75905 * 174.81858 * 8 6 5 27 27 N 1.34493 * 125.42075 * 179.97438 * 2 1 3 28 28 H 0.96995 * 126.47454 * 0.04666 * 27 2 1 29 29 H 1.08998 * 109.47345 * 270.02182 * 1 2 3 30 30 H 1.08997 * 109.47058 * 30.02586 * 1 2 3 31 31 H 1.08996 * 109.46596 * 150.02468 * 1 2 3 32 32 H 1.07993 * 126.10625 * 180.27622 * 4 3 2 33 33 H 1.08995 * 108.82545 * 307.04576 * 9 8 6 34 34 H 1.09001 * 108.82504 * 65.36119 * 9 8 6 35 35 H 1.09000 * 109.08994 * 203.87077 * 10 9 8 36 36 H 1.08998 * 108.72330 * 85.13517 * 10 9 8 37 37 H 1.09001 * 110.85586 * 157.05717 * 15 13 11 38 38 H 1.09003 * 110.86000 * 280.70200 * 15 13 11 39 39 H 1.09003 * 109.97100 * 95.28692 * 16 15 13 40 40 H 1.09008 * 109.96433 * 216.50677 * 16 15 13 41 41 H 0.96999 * 120.00412 * 180.02562 * 21 20 18 42 42 H 1.09002 * 108.16838 * 302.27105 * 26 8 6 43 43 H 1.08993 * 108.17096 * 58.85877 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7050 0.0057 5 6 3.5977 -0.6608 0.0009 6 6 4.8030 -1.4981 0.0022 7 8 5.9038 -0.9799 0.0212 8 7 4.6905 -2.8411 -0.0177 9 6 3.3484 -3.3593 0.0837 10 6 3.3099 -4.8723 0.2003 11 6 4.3981 -5.5305 -0.6136 12 1 4.3144 -6.6100 -0.4884 13 6 5.8022 -5.0820 -0.1678 14 1 6.1190 -5.5434 0.7675 15 6 6.6383 -5.5728 -1.3933 16 6 5.7006 -5.2491 -2.5797 17 7 4.3257 -5.2089 -2.0428 18 6 3.1890 -4.9231 -2.7508 19 1 2.2297 -4.9222 -2.2548 20 6 3.2697 -4.6348 -4.1063 21 7 4.4388 -4.6355 -4.7108 22 14 1.7190 -4.2456 -5.0724 23 1 1.0599 -3.0492 -4.4896 24 1 2.0731 -3.9744 -6.4888 25 1 0.7912 -5.4032 -5.0065 26 6 5.9225 -3.5685 -0.1314 27 7 2.2865 -1.0960 0.0005 28 1 1.9851 -2.0179 0.0003 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3632 -0.8902 -0.5134 32 1 4.3977 1.3723 0.0113 33 1 2.8685 -2.9238 0.9600 34 1 2.7894 -3.0640 -0.8042 35 1 2.3410 -5.2320 -0.1461 36 1 3.4358 -5.1458 1.2479 37 1 7.5722 -5.0163 -1.4738 38 1 6.8281 -6.6443 -1.3297 39 1 5.9617 -4.2810 -3.0073 40 1 5.7812 -6.0256 -3.3405 41 1 4.4953 -4.4336 -5.6579 42 1 6.4250 -3.2455 -1.0431 43 1 6.5559 -3.2983 0.7134 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036669065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:03 Heat of formation + Delta-G solvation = 80.876659 kcal Electronic energy + Delta-G solvation = -26679.352025 eV Core-core repulsion = 23148.343840 eV Total energy + Delta-G solvation = -3531.008186 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.29257 -40.16226 -38.13465 -35.47059 -33.30044 -32.38559 -32.03981 -31.79572 -29.60076 -28.09541 -27.33226 -25.31496 -24.14184 -23.15863 -22.06286 -21.05839 -20.15695 -19.85406 -18.39735 -17.23117 -16.47709 -16.41624 -15.98356 -15.82118 -15.25982 -14.76472 -14.37784 -14.17631 -13.88738 -13.82336 -13.47208 -13.11955 -13.02324 -12.69995 -12.58236 -12.50017 -12.16942 -11.73135 -11.56688 -11.35159 -11.14930 -10.91841 -10.83447 -10.32655 -10.24751 -10.06195 -9.99829 -9.93051 -9.82449 -9.76856 -9.62256 -8.71483 -8.49072 -8.11567 -6.94210 -5.82124 -3.15553 1.47633 2.89415 2.97679 3.28806 3.32676 3.37346 3.37716 3.57678 4.36586 4.38411 4.66793 4.84597 4.94473 5.00510 5.11470 5.23375 5.29806 5.33157 5.37940 5.43827 5.49740 5.59412 5.61291 5.78733 5.84006 5.96221 5.97228 6.01540 6.11979 6.21393 6.23306 6.36590 6.54290 6.59522 6.67620 6.75224 6.99401 7.27706 7.40794 7.52783 7.54096 7.71536 8.01813 8.13269 8.38310 9.07941 9.70812 10.39078 11.29775 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.007101 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.551294 B = 3941.885669 C = 5312.431298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.223 3.777 3 N -0.499 5.499 4 C 0.063 3.937 5 C -0.077 4.077 6 C 0.582 3.418 7 O -0.534 6.534 8 N -0.571 5.571 9 C 0.112 3.888 10 C -0.124 4.124 11 C 0.170 3.830 12 H 0.028 0.972 13 C -0.114 4.114 14 H 0.083 0.917 15 C -0.142 4.142 16 C 0.176 3.824 17 N -0.591 5.591 18 C -0.231 4.231 19 H 0.075 0.925 20 C -0.002 4.002 21 N -0.914 5.914 22 Si 0.905 3.095 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.285 1.285 26 C 0.145 3.855 27 N -0.554 5.554 28 H 0.429 0.571 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.181 0.819 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.043 0.957 41 H 0.254 0.746 42 H 0.070 0.930 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.361 1.717 11.776 12.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.041 4.041 3 N -0.220 5.220 4 C -0.091 4.091 5 C -0.193 4.193 6 C 0.369 3.631 7 O -0.411 6.411 8 N -0.301 5.301 9 C -0.012 4.012 10 C -0.163 4.163 11 C 0.062 3.938 12 H 0.046 0.954 13 C -0.133 4.133 14 H 0.102 0.898 15 C -0.181 4.181 16 C 0.052 3.948 17 N -0.317 5.317 18 C -0.359 4.359 19 H 0.092 0.908 20 C -0.199 4.199 21 N -0.560 5.560 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.211 1.211 26 C 0.022 3.978 27 N -0.169 5.169 28 H 0.279 0.721 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.199 0.801 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.095 2.712 11.510 12.515 hybrid contribution -0.694 -1.135 -0.771 1.538 sum -4.789 1.577 10.739 11.864 Atomic orbital electron populations 1.20273 0.84570 1.04578 1.03699 1.23444 0.95915 0.82220 1.02472 1.70126 1.02087 1.28554 1.21195 1.22565 0.94674 0.91170 1.00728 1.21158 0.83907 0.95879 1.18355 1.17035 0.86989 0.81785 0.77250 1.90796 1.25984 1.73308 1.51038 1.46127 1.06993 1.05535 1.71468 1.21054 0.83671 0.96998 0.99445 1.21253 1.02051 0.92950 1.00048 1.20216 0.90921 0.96242 0.86426 0.95432 1.22465 0.98711 0.93754 0.98419 0.89841 1.23333 0.98437 0.99997 0.96318 1.21320 0.81879 1.00510 0.91126 1.44327 1.03488 1.82120 1.01717 1.18782 0.85115 1.41331 0.90708 0.90752 1.24773 0.96692 1.01767 0.96715 1.69919 1.21780 1.54193 1.10129 0.86318 0.82388 0.78039 0.79688 1.21330 1.21490 1.21121 1.20356 0.83785 0.91748 1.01865 1.44672 1.06137 1.11118 1.54935 0.72138 0.89831 0.88830 0.90400 0.80144 0.92967 0.90739 0.90198 0.91918 0.91779 0.92116 0.93474 0.93896 0.93571 0.91207 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.51 36.01 0.38 -0.28 16 2 C 0.22 3.09 8.12 -155.61 -1.26 1.83 16 3 N -0.50 -8.06 11.20 -10.58 -0.12 -8.18 16 4 C 0.06 1.05 11.66 -17.47 -0.20 0.84 16 5 C -0.08 -1.31 6.62 -82.14 -0.54 -1.86 16 6 C 0.58 11.00 7.48 -12.81 -0.10 10.91 16 7 O -0.53 -11.30 16.49 5.20 0.09 -11.21 16 8 N -0.57 -10.12 3.19 -180.73 -0.58 -10.70 16 9 C 0.11 1.72 3.77 -5.86 -0.02 1.70 16 10 C -0.12 -1.86 5.08 -28.35 -0.14 -2.00 16 11 C 0.17 3.07 2.93 -68.33 -0.20 2.87 16 12 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 13 C -0.11 -1.85 3.80 -88.93 -0.34 -2.18 16 14 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 15 C -0.14 -2.50 6.14 -24.11 -0.15 -2.65 16 16 C 0.18 4.04 4.82 -2.54 -0.01 4.03 16 17 N -0.59 -13.45 3.05 -164.16 -0.50 -13.95 16 18 C -0.23 -5.79 8.86 -15.06 -0.13 -5.92 16 19 H 0.07 1.74 6.89 -52.49 -0.36 1.38 16 20 C 0.00 -0.06 5.49 -17.43 -0.10 -0.15 16 21 N -0.91 -25.96 10.41 55.49 0.58 -25.38 16 22 Si 0.91 21.17 29.55 -169.99 -5.02 16.14 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C 0.14 2.56 4.61 -6.19 -0.03 2.54 16 27 N -0.55 -8.00 4.98 -7.02 -0.03 -8.03 16 28 H 0.43 5.44 4.48 -40.82 -0.18 5.26 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.18 2.74 8.06 -52.49 -0.42 2.32 16 33 H 0.05 0.66 6.34 -51.93 -0.33 0.33 16 34 H 0.07 1.29 5.80 -51.93 -0.30 0.99 16 35 H 0.08 1.17 7.36 -51.93 -0.38 0.79 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.05 7.81 -51.93 -0.41 0.64 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 1.24 7.13 -51.93 -0.37 0.87 16 40 H 0.04 1.10 7.59 -51.92 -0.39 0.71 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.07 1.43 6.63 -51.93 -0.34 1.08 16 43 H 0.05 0.90 7.97 -51.93 -0.41 0.48 16 LS Contribution 331.46 15.07 4.99 4.99 Total: -1.00 -31.96 331.46 -9.45 -41.41 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.00 Total: 5.22 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: -2.85 Total: 9.68 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: -0.65 Total: -66.24 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.96 -9.45 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036669065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.289 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds