Wall clock time and date at job start Fri Apr 10 2020 17:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00050 * 2 1 4 4 H 1.48495 * 109.47274 * 240.00308 * 3 2 1 5 5 H 1.48500 * 109.46959 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47019 * 120.00047 * 3 2 1 7 7 C 1.38812 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00143 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99615 * 0.02562 * 7 2 1 10 10 C 1.47428 * 126.05823 * 359.97438 * 9 7 2 11 11 C 1.54503 * 107.14860 * 181.59653 * 10 9 7 12 12 C 1.56021 * 102.62151 * 22.83090 * 11 10 9 13 13 H 1.08997 * 112.89313 * 202.90065 * 12 11 10 14 14 C 1.53211 * 106.36129 * 78.29092 * 12 11 10 15 15 N 1.46527 * 110.20238 * 202.93215 * 14 12 11 16 16 C 1.34778 * 121.00953 * 235.60382 * 15 14 12 17 17 O 1.21282 * 120.00298 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99698 * 179.97438 * 16 15 14 19 19 C 1.50703 * 109.46944 * 180.02562 * 18 16 15 20 20 C 1.39867 * 125.89402 * 125.00619 * 19 18 16 21 21 C 1.35317 * 107.91682 * 179.97438 * 20 19 18 22 22 N 1.34944 * 107.74677 * 0.02562 * 21 20 19 23 23 H 0.96997 * 126.03767 * 180.02562 * 22 21 20 24 24 N 1.30828 * 125.89750 * 304.69469 * 19 18 16 25 25 C 1.47142 * 117.97531 * 55.60690 * 15 14 12 26 26 C 1.53046 * 107.68628 * 302.56124 * 25 15 14 27 27 C 1.46467 * 126.05014 * 179.97438 * 9 7 2 28 28 H 1.09005 * 108.34115 * 269.14281 * 27 9 7 29 29 H 0.97003 * 119.99960 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.90343 * 300.97875 * 10 9 7 31 31 H 1.08997 * 109.90061 * 62.03972 * 10 9 7 32 32 H 1.09004 * 110.77833 * 141.10816 * 11 10 9 33 33 H 1.08996 * 110.78056 * 264.54322 * 11 10 9 34 34 H 1.09002 * 109.35004 * 323.15772 * 14 12 11 35 35 H 1.09003 * 109.34834 * 82.71098 * 14 12 11 36 36 H 1.08999 * 109.47237 * 300.00587 * 18 16 15 37 37 H 1.09005 * 109.46750 * 60.00546 * 18 16 15 38 38 H 1.07997 * 126.04320 * 359.97406 * 20 19 18 39 39 H 1.08003 * 126.12705 * 180.02562 * 21 20 19 40 40 H 1.08997 * 109.81461 * 183.01244 * 25 15 14 41 41 H 1.09002 * 109.81424 * 62.10601 * 25 15 14 42 42 H 1.09001 * 109.14884 * 174.81406 * 26 25 15 43 43 H 1.08995 * 109.14710 * 294.02811 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1406 -2.5436 -0.0017 11 6 -0.4379 -4.0592 0.0380 12 6 0.8717 -4.6476 0.6486 13 1 1.0212 -5.6981 0.3992 14 6 0.7969 -4.3927 2.1575 15 7 2.1421 -4.3959 2.7386 16 6 2.4559 -5.2191 3.7585 17 8 1.6193 -5.9729 4.2090 18 6 3.8468 -5.2039 4.3385 19 6 3.9356 -6.2097 5.4572 20 6 4.8669 -7.2487 5.5538 21 6 4.6176 -7.9261 6.6984 22 7 3.5656 -7.3369 7.3043 23 1 3.1649 -7.6094 8.1446 24 7 3.1586 -6.2581 6.5086 25 6 3.1397 -3.4730 2.1746 26 6 3.2667 -3.7816 0.6810 27 6 1.9200 -3.7267 -0.0028 28 1 2.0450 -4.0455 -1.0376 29 1 -0.4850 0.8401 0.0004 30 1 -0.5652 -2.0589 0.8774 31 1 -0.5602 -2.1040 -0.9066 32 1 -1.2926 -4.2688 0.6813 33 1 -0.6045 -4.4471 -0.9669 34 1 0.3280 -3.4253 2.3376 35 1 0.1991 -5.1742 2.6266 36 1 4.5672 -5.4604 3.5617 37 1 4.0683 -4.2091 4.7252 38 1 5.6470 -7.4711 4.8409 39 1 5.1630 -8.7845 7.0620 40 1 4.1010 -3.6228 2.6660 41 1 2.8099 -2.4432 2.3124 42 1 3.9317 -3.0511 0.2203 43 1 3.6897 -4.7784 0.5567 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036677290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:21 Heat of formation + Delta-G solvation = 73.391792 kcal Electronic energy + Delta-G solvation = -25617.446274 eV Core-core repulsion = 22086.113520 eV Total energy + Delta-G solvation = -3531.332754 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.23232 -39.91328 -38.10007 -34.89448 -33.13307 -32.59977 -31.56216 -29.98718 -29.58008 -28.60717 -27.26559 -25.08797 -23.83591 -22.47976 -21.69720 -20.49132 -19.98432 -19.08988 -18.19625 -18.00493 -16.84827 -16.32102 -15.61535 -15.22319 -15.04913 -14.51484 -14.33000 -13.97018 -13.89924 -13.61407 -13.47142 -13.11366 -12.82695 -12.63478 -12.31471 -12.08907 -11.95886 -11.47382 -11.36529 -11.06099 -10.99923 -10.75620 -10.64861 -10.61587 -10.16592 -9.97244 -9.88285 -9.61005 -9.59590 -9.57257 -9.25477 -8.78289 -8.59121 -8.08355 -6.80823 -5.71071 -3.03855 1.86768 2.66698 2.83014 2.99409 3.39268 3.43860 3.45832 3.47933 4.48858 4.53485 4.66574 4.91502 5.11567 5.20953 5.32502 5.38233 5.42488 5.57015 5.57893 5.60525 5.64663 5.67931 5.82333 5.88785 5.94384 6.08394 6.18699 6.30684 6.36431 6.40555 6.48753 6.52910 6.59739 6.76170 6.81801 6.93968 7.01966 7.20823 7.56957 7.63437 7.66603 7.82641 7.87744 8.25712 8.55782 9.21124 9.83638 10.51644 11.40942 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021358 B = 0.003763 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.653191 B = 7439.112519 C = 8044.178705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.594 5.594 10 C 0.177 3.823 11 C -0.143 4.143 12 C -0.116 4.116 13 H 0.076 0.924 14 C 0.128 3.872 15 N -0.602 5.602 16 C 0.516 3.484 17 O -0.540 6.540 18 C -0.061 4.061 19 C 0.090 3.910 20 C -0.266 4.266 21 C 0.050 3.950 22 N -0.480 5.480 23 H 0.437 0.563 24 N -0.261 5.261 25 C 0.112 3.888 26 C -0.128 4.128 27 C 0.171 3.829 28 H 0.016 0.984 29 H 0.252 0.748 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.147 0.853 39 H 0.174 0.826 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.556 -13.723 8.893 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.182 4.182 12 C -0.137 4.137 13 H 0.094 0.906 14 C 0.006 3.994 15 N -0.334 5.334 16 C 0.303 3.697 17 O -0.417 6.417 18 C -0.102 4.102 19 C -0.078 4.078 20 C -0.296 4.296 21 C -0.097 4.097 22 N -0.188 5.188 23 H 0.280 0.720 24 N -0.084 5.084 25 C -0.011 4.011 26 C -0.168 4.168 27 C 0.063 3.937 28 H 0.034 0.966 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.165 0.835 39 H 0.191 0.809 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.072 -13.337 9.725 18.374 hybrid contribution 0.998 0.381 -0.150 1.079 sum 9.070 -12.956 9.574 18.488 Atomic orbital electron populations 1.69947 1.04870 1.25086 1.56821 1.24774 0.95620 0.97526 1.02389 0.86273 0.78495 0.83590 0.77828 1.21273 1.21745 1.21197 1.18908 0.90333 0.82194 1.43895 0.90367 1.44314 1.01491 0.99374 1.86770 1.21234 0.84323 0.88277 1.00951 1.23139 0.95998 0.99601 0.99437 1.22750 0.97741 0.98346 0.94816 0.90574 1.21494 0.82800 1.02761 0.92323 1.48046 1.13361 1.38495 1.33526 1.20218 0.89519 0.80169 0.79837 1.90691 1.50539 1.40104 1.60346 1.20086 0.96672 0.98682 0.94794 1.21630 0.94225 0.97096 0.94817 1.21394 1.06175 1.00713 1.01325 1.22516 0.92097 0.99735 0.95324 1.46399 1.26182 1.24749 1.21501 0.71968 1.77443 1.20957 1.05188 1.04811 1.21806 0.90663 0.94820 0.93768 1.21591 0.99160 1.00737 0.95280 1.20235 0.90829 0.87059 0.95576 0.96637 0.93754 0.93547 0.94008 0.92053 0.92420 0.90470 0.90430 0.87059 0.87309 0.83516 0.80886 0.90932 0.89162 0.90617 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.20 10.38 55.49 0.58 -25.62 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.30 29.55 -169.99 -5.02 16.27 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.23 -5.76 9.02 -15.06 -0.14 -5.89 16 8 H 0.08 1.89 6.69 -52.49 -0.35 1.54 16 9 N -0.59 -13.97 3.12 -164.50 -0.51 -14.48 16 10 C 0.18 4.13 4.64 -2.75 -0.01 4.12 16 11 C -0.14 -2.65 6.29 -24.33 -0.15 -2.81 16 12 C -0.12 -2.06 3.86 -88.38 -0.34 -2.40 16 13 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 14 C 0.13 2.36 5.45 -3.92 -0.02 2.33 16 15 N -0.60 -10.13 2.93 -172.99 -0.51 -10.64 16 16 C 0.52 8.65 7.70 -10.98 -0.08 8.57 16 17 O -0.54 -11.00 15.00 5.56 0.08 -10.92 16 18 C -0.06 -0.77 4.64 -29.03 -0.13 -0.91 16 19 C 0.09 1.25 6.01 -82.41 -0.50 0.75 16 20 C -0.27 -2.90 10.72 -40.01 -0.43 -3.33 16 21 C 0.05 0.45 11.99 -17.22 -0.21 0.25 16 22 N -0.48 -5.17 7.36 30.45 0.22 -4.95 16 23 H 0.44 3.20 8.96 -182.61 -1.64 1.56 16 24 N -0.26 -3.98 12.06 33.67 0.41 -3.58 16 25 C 0.11 1.74 6.26 -3.67 -0.02 1.72 16 26 C -0.13 -2.09 5.19 -27.64 -0.14 -2.23 16 27 C 0.17 3.31 2.85 -68.37 -0.19 3.11 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.05 1.21 6.99 -51.93 -0.36 0.84 16 31 H 0.04 1.09 7.56 -51.93 -0.39 0.70 16 32 H 0.06 1.05 7.97 -51.93 -0.41 0.64 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.60 6.80 -51.93 -0.35 1.24 16 35 H 0.08 1.45 7.00 -51.93 -0.36 1.09 16 36 H 0.11 1.09 7.76 -51.93 -0.40 0.68 16 37 H 0.11 1.23 7.90 -51.93 -0.41 0.82 16 38 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.17 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.07 0.86 5.99 -51.93 -0.31 0.55 16 41 H 0.09 1.68 7.48 -51.93 -0.39 1.29 16 42 H 0.08 1.25 7.01 -51.93 -0.36 0.89 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 336.92 15.07 5.08 5.08 Total: -1.00 -33.83 336.92 -9.57 -43.40 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.42 Total: 2.41 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -2.47 Total: 3.01 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: 0.18 Total: -59.26 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.08 Total: -10.92 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.83 -9.57 -43.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036677290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.793 kcal (2) G-P(sol) polarization free energy of solvation -33.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds