Wall clock time and date at job start Fri Apr 10 2020 17:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00013 * 2 1 4 4 H 1.48502 * 109.47077 * 85.01451 * 3 2 1 5 5 H 1.48496 * 109.46859 * 325.01580 * 3 2 1 6 6 H 1.48497 * 109.47235 * 205.01490 * 3 2 1 7 7 C 1.38809 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00588 * 187.33387 * 7 2 1 9 9 N 1.36942 * 119.99937 * 7.34283 * 7 2 1 10 10 C 1.47432 * 126.05380 * 6.27210 * 9 7 2 11 11 C 1.54518 * 107.14028 * 178.31996 * 10 9 7 12 12 C 1.56016 * 102.70299 * 337.49931 * 11 10 9 13 13 H 1.08995 * 113.55659 * 157.21629 * 12 11 10 14 14 C 1.53209 * 106.35665 * 281.52354 * 12 11 10 15 15 N 1.46518 * 110.21799 * 157.03326 * 14 12 11 16 16 C 1.34778 * 121.01428 * 124.38539 * 15 14 12 17 17 O 1.21286 * 119.99696 * 0.02562 * 16 15 14 18 18 C 1.50693 * 120.00293 * 180.02562 * 16 15 14 19 19 N 1.46503 * 109.47426 * 179.97438 * 18 16 15 20 20 C 1.36876 * 126.39809 * 269.71962 * 19 18 16 21 21 C 1.34681 * 106.81772 * 179.83558 * 20 19 18 22 22 N 1.34129 * 108.01635 * 0.42273 * 21 20 19 23 23 C 1.30504 * 109.26027 * 359.73058 * 22 21 20 24 24 C 1.47144 * 117.97760 * 304.40737 * 15 14 12 25 25 C 1.53049 * 107.67214 * 57.44957 * 24 15 14 26 26 C 1.46464 * 126.05874 * 186.58896 * 9 7 2 27 27 H 1.08997 * 108.35146 * 90.80254 * 26 9 7 28 28 H 0.97004 * 120.00257 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.90124 * 297.82707 * 10 9 7 30 30 H 1.09003 * 109.89889 * 59.06795 * 10 9 7 31 31 H 1.09003 * 110.90638 * 219.11130 * 11 10 9 32 32 H 1.08998 * 110.57240 * 95.73739 * 11 10 9 33 33 H 1.08999 * 109.35020 * 36.80440 * 14 12 11 34 34 H 1.09003 * 109.34280 * 277.26127 * 14 12 11 35 35 H 1.08994 * 109.47460 * 300.00062 * 18 16 15 36 36 H 1.09005 * 109.47074 * 60.00427 * 18 16 15 37 37 H 1.07996 * 126.59529 * 359.97438 * 20 19 18 38 38 H 1.07995 * 125.99174 * 180.18590 * 21 20 19 39 39 H 1.07994 * 125.65513 * 179.97438 * 23 22 21 40 40 H 1.08995 * 109.81844 * 297.90807 * 24 15 14 41 41 H 1.09002 * 109.87272 * 177.01973 * 24 15 14 42 42 H 1.09001 * 109.14929 * 185.15173 * 25 24 15 43 43 H 1.08999 * 109.10984 * 65.96599 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 1.3948 5 1 1.5042 2.6199 -0.8027 6 1 3.5964 1.4121 -0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0836 -1.2059 0.1199 9 7 1.3340 -2.3833 -0.1505 10 6 -0.1020 -2.5287 -0.4513 11 6 -0.3917 -4.0419 -0.5688 12 6 1.0131 -4.6357 -0.8976 13 1 1.1117 -5.6900 -0.6394 14 6 1.2555 -4.3708 -2.3871 15 7 2.6920 -4.3789 -2.6756 16 6 3.2073 -5.1978 -3.6138 17 8 2.4789 -5.9429 -4.2346 18 6 4.6883 -5.1877 -3.8917 19 7 4.9944 -6.1593 -4.9446 20 6 5.3178 -7.4771 -4.7647 21 6 5.5163 -8.0003 -5.9897 22 7 5.3286 -7.0261 -6.8923 23 6 5.0157 -5.9205 -6.2736 24 6 3.5550 -3.4661 -1.9094 25 6 3.3670 -3.7857 -0.4245 26 6 1.9077 -3.7259 -0.0354 27 1 1.8130 -4.0520 1.0003 28 1 -0.4851 0.8401 -0.0004 29 1 -0.6955 -2.0966 0.3544 30 1 -0.3355 -2.0337 -1.3940 31 1 -1.0950 -4.2417 -1.3773 32 1 -0.7660 -4.4347 0.3766 33 1 0.8391 -3.3994 -2.6536 34 1 0.7645 -5.1455 -2.9761 35 1 4.9903 -4.1921 -4.2166 36 1 5.2301 -5.4536 -2.9839 37 1 5.3962 -7.9979 -3.8219 38 1 5.7838 -9.0238 -6.2070 39 1 4.8085 -4.9717 -6.7460 40 1 3.2661 -2.4334 -2.1046 41 1 4.5971 -3.6177 -2.1910 42 1 3.9256 -3.0630 0.1703 43 1 3.7501 -4.7862 -0.2235 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036907433.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:31 Heat of formation + Delta-G solvation = 69.038404 kcal Electronic energy + Delta-G solvation = -25733.767593 eV Core-core repulsion = 22202.246061 eV Total energy + Delta-G solvation = -3531.521531 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.11380 -40.22665 -38.38546 -35.21422 -34.08000 -32.88193 -31.79015 -29.78306 -29.44147 -28.43170 -27.24234 -25.24689 -23.93885 -22.72178 -21.38622 -21.37634 -20.21415 -19.87244 -18.47717 -17.65816 -17.23336 -16.48676 -15.69244 -15.56471 -15.31319 -14.82235 -14.31802 -14.27807 -14.05296 -13.92989 -13.69823 -13.36219 -13.27673 -12.99064 -12.62631 -12.38679 -12.29454 -11.68919 -11.58630 -11.22012 -11.14064 -10.92612 -10.79232 -10.36852 -10.24557 -10.14542 -10.05902 -10.04528 -9.76553 -9.70797 -9.41859 -8.72152 -8.53495 -8.41871 -6.92515 -5.82442 -3.17486 1.93317 2.47996 2.54747 3.13325 3.21139 3.30304 3.34898 3.38555 4.30209 4.37949 4.44108 4.68118 4.72195 4.78145 4.97525 5.09056 5.19600 5.35488 5.37651 5.40484 5.44681 5.60656 5.62956 5.72587 5.87222 5.98654 6.09106 6.13871 6.16556 6.20968 6.27458 6.39551 6.52105 6.62277 6.68035 6.73584 6.78286 7.06591 7.37301 7.48537 7.54787 7.70653 8.03017 8.09290 8.14059 9.07925 9.71329 10.38855 11.28511 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.003828 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.945423 B = 7313.373520 C = 7986.188583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.141 4.141 12 C -0.116 4.116 13 H 0.077 0.923 14 C 0.127 3.873 15 N -0.594 5.594 16 C 0.494 3.506 17 O -0.535 6.535 18 C 0.087 3.913 19 N -0.443 5.443 20 C -0.046 4.046 21 C -0.032 4.032 22 N -0.497 5.497 23 C 0.193 3.807 24 C 0.109 3.891 25 C -0.129 4.129 26 C 0.170 3.830 27 H 0.018 0.982 28 H 0.253 0.747 29 H 0.059 0.941 30 H 0.031 0.969 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.171 0.829 38 H 0.168 0.832 39 H 0.202 0.798 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.937 -9.933 -3.862 13.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.097 0.903 9 N -0.318 5.318 10 C 0.048 3.952 11 C -0.180 4.180 12 C -0.137 4.137 13 H 0.096 0.904 14 C 0.005 3.995 15 N -0.327 5.327 16 C 0.280 3.720 17 O -0.412 6.412 18 C -0.040 4.040 19 N -0.126 5.126 20 C -0.179 4.179 21 C -0.180 4.180 22 N -0.215 5.215 23 C -0.090 4.090 24 C -0.013 4.013 25 C -0.168 4.168 26 C 0.062 3.938 27 H 0.036 0.964 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.188 0.812 38 H 0.185 0.815 39 H 0.218 0.782 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.530 -10.070 -4.933 14.089 hybrid contribution 0.233 1.150 1.187 1.669 sum 8.762 -8.921 -3.746 13.054 Atomic orbital electron populations 1.69949 1.04953 1.25124 1.56202 1.24792 0.95576 0.97658 1.02134 0.86196 0.78647 0.83892 0.77542 1.21673 1.21707 1.20657 1.18926 0.90824 0.82373 1.43699 0.90343 1.44306 1.05142 0.99315 1.83075 1.21289 0.85418 0.88502 1.00010 1.23118 0.95040 0.99438 1.00375 1.22746 0.97685 0.98476 0.94750 0.90445 1.21593 0.79211 1.03009 0.95689 1.48089 1.09553 1.38448 1.36593 1.20555 0.89949 0.80894 0.80634 1.90757 1.60778 1.40202 1.49439 1.21762 0.95295 0.94465 0.92478 1.45048 1.50750 1.09356 1.07437 1.22661 1.09524 0.84391 1.01302 1.22224 1.07851 0.99331 0.88572 1.70274 1.18939 0.99109 1.33196 1.24937 1.04401 1.00127 0.79494 1.21887 0.92522 0.95206 0.91695 1.21593 0.99032 1.00848 0.95326 1.20218 0.90623 0.87252 0.95723 0.96435 0.93703 0.92307 0.95065 0.91984 0.92142 0.90199 0.90224 0.85890 0.86138 0.81185 0.81495 0.78174 0.88694 0.91170 0.90290 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.21 10.54 55.49 0.58 -24.62 16 2 C 0.00 -0.12 5.45 -17.43 -0.10 -0.21 16 3 Si 0.91 20.47 29.56 -169.99 -5.02 15.45 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.23 -5.60 9.03 -15.06 -0.14 -5.74 16 8 H 0.08 1.80 6.66 -52.49 -0.35 1.45 16 9 N -0.59 -13.14 3.12 -164.49 -0.51 -13.65 16 10 C 0.17 3.81 4.69 -2.74 -0.01 3.79 16 11 C -0.14 -2.43 6.28 -24.32 -0.15 -2.58 16 12 C -0.12 -1.87 3.86 -88.38 -0.34 -2.21 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 14 C 0.13 2.06 5.45 -3.92 -0.02 2.03 16 15 N -0.59 -8.45 2.93 -173.00 -0.51 -8.96 16 16 C 0.49 6.84 7.78 -10.99 -0.09 6.76 16 17 O -0.53 -9.60 15.86 5.55 0.09 -9.51 16 18 C 0.09 0.83 4.99 -5.20 -0.03 0.81 16 19 N -0.44 -5.19 2.24 -119.87 -0.27 -5.45 16 20 C -0.05 -0.53 11.58 -16.56 -0.19 -0.72 16 21 C -0.03 -0.41 11.87 -17.81 -0.21 -0.62 16 22 N -0.50 -7.20 11.25 -14.66 -0.16 -7.37 16 23 C 0.19 2.43 12.56 -90.36 -1.14 1.29 16 24 C 0.11 1.43 6.26 -3.66 -0.02 1.41 16 25 C -0.13 -1.87 5.16 -27.64 -0.14 -2.01 16 26 C 0.17 3.03 2.85 -68.37 -0.19 2.84 16 27 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.06 1.49 7.07 -51.93 -0.37 1.12 16 30 H 0.03 0.76 7.53 -51.93 -0.39 0.37 16 31 H 0.06 0.98 7.97 -51.93 -0.41 0.57 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.47 6.82 -51.93 -0.35 1.11 16 34 H 0.08 1.33 7.00 -51.93 -0.36 0.96 16 35 H 0.12 0.88 7.90 -51.93 -0.41 0.47 16 36 H 0.12 0.86 7.78 -51.93 -0.40 0.46 16 37 H 0.17 1.48 8.06 -52.49 -0.42 1.05 16 38 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.20 1.92 8.06 -52.49 -0.42 1.50 16 40 H 0.09 1.52 7.48 -51.93 -0.39 1.13 16 41 H 0.07 0.64 6.00 -51.93 -0.31 0.33 16 42 H 0.08 1.19 7.02 -51.93 -0.36 0.83 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 338.90 15.07 5.11 5.11 Total: -1.00 -32.18 338.90 -9.68 -41.86 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.21 Total: 2.32 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -2.77 Total: 4.84 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.87 Total: -60.06 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.18 -9.68 -41.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036907433.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.898 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds