Wall clock time and date at job start Fri Apr 10 2020 17:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00013 * 2 1 4 4 H 1.48502 * 109.47077 * 85.01451 * 3 2 1 5 5 H 1.48496 * 109.46859 * 325.01580 * 3 2 1 6 6 H 1.48497 * 109.47235 * 205.01490 * 3 2 1 7 7 C 1.38809 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00588 * 187.33387 * 7 2 1 9 9 N 1.36942 * 119.99937 * 7.34283 * 7 2 1 10 10 C 1.47432 * 126.05380 * 6.27210 * 9 7 2 11 11 C 1.54518 * 107.14028 * 178.31996 * 10 9 7 12 12 C 1.56016 * 102.70299 * 337.49931 * 11 10 9 13 13 H 1.08995 * 113.55659 * 157.21629 * 12 11 10 14 14 C 1.53209 * 106.35665 * 281.52354 * 12 11 10 15 15 N 1.46518 * 110.21799 * 157.03326 * 14 12 11 16 16 C 1.34778 * 121.01428 * 124.38539 * 15 14 12 17 17 O 1.21286 * 119.99696 * 0.02562 * 16 15 14 18 18 C 1.50693 * 120.00293 * 180.02562 * 16 15 14 19 19 N 1.46503 * 109.47426 * 179.97438 * 18 16 15 20 20 C 1.36876 * 126.39809 * 269.71962 * 19 18 16 21 21 C 1.34681 * 106.81772 * 179.83558 * 20 19 18 22 22 N 1.34129 * 108.01635 * 0.42273 * 21 20 19 23 23 C 1.30504 * 109.26027 * 359.73058 * 22 21 20 24 24 C 1.47144 * 117.97760 * 304.40737 * 15 14 12 25 25 C 1.53049 * 107.67214 * 57.44957 * 24 15 14 26 26 C 1.46464 * 126.05874 * 186.58896 * 9 7 2 27 27 H 1.08997 * 108.35146 * 90.80254 * 26 9 7 28 28 H 0.97004 * 120.00257 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.90124 * 297.82707 * 10 9 7 30 30 H 1.09003 * 109.89889 * 59.06795 * 10 9 7 31 31 H 1.09003 * 110.90638 * 219.11130 * 11 10 9 32 32 H 1.08998 * 110.57240 * 95.73739 * 11 10 9 33 33 H 1.08999 * 109.35020 * 36.80440 * 14 12 11 34 34 H 1.09003 * 109.34280 * 277.26127 * 14 12 11 35 35 H 1.08994 * 109.47460 * 300.00062 * 18 16 15 36 36 H 1.09005 * 109.47074 * 60.00427 * 18 16 15 37 37 H 1.07996 * 126.59529 * 359.97438 * 20 19 18 38 38 H 1.07995 * 125.99174 * 180.18590 * 21 20 19 39 39 H 1.07994 * 125.65513 * 179.97438 * 23 22 21 40 40 H 1.08995 * 109.81844 * 297.90807 * 24 15 14 41 41 H 1.09002 * 109.87272 * 177.01973 * 24 15 14 42 42 H 1.09001 * 109.14929 * 185.15173 * 25 24 15 43 43 H 1.08999 * 109.10984 * 65.96599 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 1.3948 5 1 1.5042 2.6199 -0.8027 6 1 3.5964 1.4121 -0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0836 -1.2059 0.1199 9 7 1.3340 -2.3833 -0.1505 10 6 -0.1020 -2.5287 -0.4513 11 6 -0.3917 -4.0419 -0.5688 12 6 1.0131 -4.6357 -0.8976 13 1 1.1117 -5.6900 -0.6394 14 6 1.2555 -4.3708 -2.3871 15 7 2.6920 -4.3789 -2.6756 16 6 3.2073 -5.1978 -3.6138 17 8 2.4789 -5.9429 -4.2346 18 6 4.6883 -5.1877 -3.8917 19 7 4.9944 -6.1593 -4.9446 20 6 5.3178 -7.4771 -4.7647 21 6 5.5163 -8.0003 -5.9897 22 7 5.3286 -7.0261 -6.8923 23 6 5.0157 -5.9205 -6.2736 24 6 3.5550 -3.4661 -1.9094 25 6 3.3670 -3.7857 -0.4245 26 6 1.9077 -3.7259 -0.0354 27 1 1.8130 -4.0520 1.0003 28 1 -0.4851 0.8401 -0.0004 29 1 -0.6955 -2.0966 0.3544 30 1 -0.3355 -2.0337 -1.3940 31 1 -1.0950 -4.2417 -1.3773 32 1 -0.7660 -4.4347 0.3766 33 1 0.8391 -3.3994 -2.6536 34 1 0.7645 -5.1455 -2.9761 35 1 4.9903 -4.1921 -4.2166 36 1 5.2301 -5.4536 -2.9839 37 1 5.3962 -7.9979 -3.8219 38 1 5.7838 -9.0238 -6.2070 39 1 4.8085 -4.9717 -6.7460 40 1 3.2661 -2.4334 -2.1046 41 1 4.5971 -3.6177 -2.1910 42 1 3.9256 -3.0630 0.1703 43 1 3.7501 -4.7862 -0.2235 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036907433.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:30 Heat of formation + Delta-G solvation = 50.128028 kcal Electronic energy + Delta-G solvation = -25734.587608 eV Core-core repulsion = 22202.246061 eV Total energy + Delta-G solvation = -3532.341547 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.97932 -41.44405 -39.71796 -36.55199 -35.04142 -34.50621 -33.17953 -31.24261 -30.40618 -29.70359 -28.43336 -26.77279 -25.41920 -23.99697 -22.33246 -22.25013 -21.83053 -21.02324 -19.79177 -18.63452 -18.43226 -18.01577 -16.97746 -16.77212 -16.52052 -16.24465 -15.71001 -15.54296 -15.17333 -14.93708 -14.81351 -14.52864 -14.34976 -14.07096 -13.97780 -13.83369 -13.33533 -13.16745 -13.02188 -12.80768 -12.65757 -12.55704 -12.21951 -11.98749 -11.71250 -11.54961 -11.48362 -11.28477 -11.19344 -10.95923 -10.63939 -10.41755 -9.64955 -9.39455 -8.78721 -7.77249 -5.12083 1.04899 1.45386 1.50436 1.50842 1.59297 1.71986 2.15401 2.27890 2.54472 3.34433 3.41868 3.59530 3.79021 3.82834 3.89616 3.92399 4.01969 4.04511 4.12138 4.24564 4.26523 4.43958 4.55703 4.61132 4.62357 4.74348 4.79660 4.81038 4.89320 4.96707 5.13258 5.22757 5.26954 5.31949 5.39041 5.50463 5.57539 5.70249 5.81050 5.85472 6.21273 6.26043 6.42783 7.02290 7.14860 7.15888 7.85952 8.53382 9.33584 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.003828 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.945423 B = 7313.373520 C = 7986.188583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.071 4.071 3 Si 0.966 3.034 4 H -0.295 1.295 5 H -0.307 1.307 6 H -0.258 1.258 7 C -0.216 4.216 8 H 0.097 0.903 9 N -0.606 5.606 10 C 0.181 3.819 11 C -0.131 4.131 12 C -0.101 4.101 13 H 0.103 0.897 14 C 0.134 3.866 15 N -0.594 5.594 16 C 0.496 3.504 17 O -0.580 6.580 18 C 0.091 3.909 19 N -0.446 5.446 20 C -0.043 4.043 21 C -0.059 4.059 22 N -0.536 5.536 23 C 0.180 3.820 24 C 0.113 3.887 25 C -0.126 4.126 26 C 0.161 3.839 27 H 0.010 0.990 28 H 0.241 0.759 29 H 0.017 0.983 30 H -0.004 1.004 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.155 0.845 36 H 0.159 0.841 37 H 0.199 0.801 38 H 0.182 0.818 39 H 0.221 0.779 40 H 0.063 0.937 41 H 0.124 0.876 42 H 0.076 0.924 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.029 -11.391 -3.495 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.796 3.204 4 H -0.222 1.222 5 H -0.234 1.234 6 H -0.182 1.182 7 C -0.345 4.345 8 H 0.114 0.886 9 N -0.332 5.332 10 C 0.056 3.944 11 C -0.170 4.170 12 C -0.121 4.121 13 H 0.121 0.879 14 C 0.011 3.989 15 N -0.325 5.325 16 C 0.284 3.716 17 O -0.460 6.460 18 C -0.034 4.034 19 N -0.128 5.128 20 C -0.176 4.176 21 C -0.205 4.205 22 N -0.255 5.255 23 C -0.103 4.103 24 C -0.009 4.009 25 C -0.164 4.164 26 C 0.054 3.946 27 H 0.028 0.972 28 H 0.050 0.950 29 H 0.035 0.965 30 H 0.014 0.986 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.172 0.828 36 H 0.177 0.823 37 H 0.216 0.784 38 H 0.199 0.801 39 H 0.238 0.762 40 H 0.081 0.919 41 H 0.142 0.858 42 H 0.094 0.906 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.682 -11.557 -4.554 17.052 hybrid contribution -0.755 1.530 1.082 2.020 sum 10.928 -10.027 -3.472 15.232 Atomic orbital electron populations 1.70182 1.06513 1.24752 1.58988 1.25564 0.96239 1.00858 1.03686 0.85235 0.78324 0.80045 0.76827 1.22229 1.23402 1.18211 1.19396 0.91707 0.83017 1.40407 0.88570 1.44544 1.05309 1.00767 1.82551 1.20983 0.85461 0.91362 0.96578 1.22996 0.96617 0.95807 1.01535 1.22686 0.95841 0.99269 0.94273 0.87889 1.21294 0.81043 1.01024 0.95546 1.48088 1.08593 1.38834 1.37026 1.21284 0.91638 0.79470 0.79179 1.90750 1.62439 1.42005 1.50790 1.22016 0.91906 0.95816 0.93654 1.45193 1.50312 1.09796 1.07512 1.23148 1.08050 0.84404 1.02006 1.22652 1.08728 1.00032 0.89106 1.70230 1.20265 1.00323 1.34713 1.25393 1.04124 1.00530 0.80214 1.21937 0.94956 0.93243 0.90726 1.21563 0.95978 1.02818 0.96090 1.20478 0.93351 0.85020 0.95716 0.97205 0.94985 0.96488 0.98575 0.90671 0.91083 0.93321 0.90743 0.82757 0.82314 0.78363 0.80078 0.76231 0.91862 0.85833 0.90570 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.21 10.54 21.65 0.23 -54.98 16 2 C -0.07 -3.74 5.45 84.86 0.46 -3.28 16 3 Si 0.97 42.60 29.56 68.60 2.03 44.63 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.31 -14.18 7.11 99.48 0.71 -13.48 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 7 C -0.22 -10.49 9.03 84.03 0.76 -9.73 16 8 H 0.10 4.23 6.66 -2.91 -0.02 4.21 16 9 N -0.61 -26.99 3.12 -674.32 -2.10 -29.09 16 10 C 0.18 8.37 4.69 86.72 0.41 8.77 16 11 C -0.13 -4.50 6.28 32.16 0.20 -4.29 16 12 C -0.10 -3.05 3.86 -9.34 -0.04 -3.08 16 13 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 14 C 0.13 4.19 5.45 86.45 0.47 4.66 16 15 N -0.59 -15.06 2.93 -819.63 -2.40 -17.46 16 16 C 0.50 11.99 7.78 87.65 0.68 12.67 16 17 O -0.58 -19.62 15.86 -3.05 -0.05 -19.67 16 18 C 0.09 1.28 4.99 85.63 0.43 1.71 16 19 N -0.45 -8.83 2.24 -533.15 -1.19 -10.02 16 20 C -0.04 -0.85 11.58 83.09 0.96 0.11 16 21 C -0.06 -1.38 11.87 83.53 0.99 -0.39 16 22 N -0.54 -14.92 11.25 -200.30 -2.25 -17.17 16 23 C 0.18 4.15 12.56 180.26 2.26 6.41 16 24 C 0.11 2.50 6.26 86.27 0.54 3.04 16 25 C -0.13 -3.13 5.16 30.01 0.15 -2.97 16 26 C 0.16 5.43 2.85 44.73 0.13 5.56 16 27 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.24 13.84 8.31 -92.71 -0.77 13.07 16 29 H 0.02 0.91 7.07 -2.39 -0.02 0.90 16 30 H 0.00 -0.21 7.53 -2.39 -0.02 -0.23 16 31 H 0.07 2.37 7.97 -2.39 -0.02 2.35 16 32 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.05 1.82 6.82 -2.39 -0.02 1.81 16 34 H 0.07 2.42 7.00 -2.39 -0.02 2.40 16 35 H 0.15 1.27 7.90 -2.39 -0.02 1.25 16 36 H 0.16 1.10 7.78 -2.38 -0.02 1.08 16 37 H 0.20 2.57 8.06 -2.91 -0.02 2.54 16 38 H 0.18 3.35 8.06 -2.91 -0.02 3.32 16 39 H 0.22 3.75 8.06 -2.91 -0.02 3.72 16 40 H 0.06 1.86 7.48 -2.39 -0.02 1.84 16 41 H 0.12 1.44 6.00 -2.39 -0.01 1.43 16 42 H 0.08 1.98 7.02 -2.39 -0.02 1.97 16 43 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -75.04 338.90 3.68 -71.36 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 1.01 Total: 13.22 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 8.41 Total: 19.19 kcal Atomic # 7 Polarization: -121.00 SS G_CDS: -7.73 Total: -128.73 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.05 Total: -19.67 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -75.04 3.68 -71.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036907433.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.490 kcal (2) G-P(sol) polarization free energy of solvation -75.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds