Wall clock time and date at job start Fri Apr 10 2020 17:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48505 * 109.46677 * 240.00106 * 3 2 1 5 5 H 1.48501 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47416 * 120.00100 * 3 2 1 7 7 C 1.38811 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00527 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.48160 * 126.40142 * 0.02562 * 9 7 2 11 11 C 1.55297 * 107.03829 * 184.92587 * 10 9 7 12 12 C 1.53743 * 101.83998 * 22.48556 * 11 10 9 13 13 H 1.08996 * 111.31542 * 79.85006 * 12 11 10 14 14 C 1.52247 * 114.73509 * 207.24858 * 12 11 10 15 15 N 1.47715 * 106.36508 * 169.56856 * 14 12 11 16 16 C 1.34778 * 119.68162 * 127.92361 * 15 14 12 17 17 O 1.21279 * 120.00325 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00033 * 179.97438 * 16 15 14 19 19 N 1.46503 * 109.47225 * 179.97438 * 18 16 15 20 20 C 1.36880 * 126.40101 * 89.99665 * 19 18 16 21 21 C 1.34666 * 106.81960 * 180.02562 * 20 19 18 22 22 N 1.34126 * 108.01903 * 0.02562 * 21 20 19 23 23 C 1.30503 * 109.25981 * 359.72826 * 22 21 20 24 24 C 1.46595 * 120.63894 * 307.93503 * 15 14 12 25 25 C 1.53963 * 110.56760 * 47.82883 * 24 15 14 26 26 C 1.45459 * 126.40667 * 179.71408 * 9 7 2 27 27 H 1.09000 * 109.26349 * 266.19757 * 26 9 7 28 28 H 0.96998 * 120.00243 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.92500 * 304.27335 * 10 9 7 30 30 H 1.09004 * 109.91830 * 65.38281 * 10 9 7 31 31 H 1.09000 * 110.94833 * 140.61578 * 11 10 9 32 32 H 1.08992 * 110.95322 * 264.30772 * 11 10 9 33 33 H 1.09010 * 110.06722 * 288.77924 * 14 12 11 34 34 H 1.09004 * 110.07111 * 50.24713 * 14 12 11 35 35 H 1.09003 * 109.46791 * 299.99434 * 18 16 15 36 36 H 1.09000 * 109.47180 * 59.99420 * 18 16 15 37 37 H 1.08000 * 126.58698 * 0.03641 * 20 19 18 38 38 H 1.07993 * 125.98651 * 180.02562 * 21 20 19 39 39 H 1.08000 * 125.65268 * 180.29297 * 23 22 21 40 40 H 1.08996 * 109.26046 * 168.10557 * 24 15 14 41 41 H 1.08996 * 109.26084 * 287.58842 * 24 15 14 42 42 H 1.09001 * 109.88133 * 68.40744 * 25 24 15 43 43 H 1.09005 * 109.87808 * 189.48325 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1467 -2.5534 -0.0005 11 6 -0.4340 -4.0742 0.1274 12 6 0.8680 -4.5888 0.7629 13 1 0.8839 -4.4056 1.8372 14 6 1.2008 -6.0404 0.4467 15 7 2.5820 -6.2634 0.9205 16 6 2.8478 -7.3019 1.7375 17 8 1.9551 -8.0476 2.0805 18 6 4.2545 -7.5364 2.2247 19 7 4.2804 -8.7168 3.0920 20 6 4.4915 -10.0104 2.6973 21 6 4.4328 -10.7710 3.8071 22 7 4.1919 -9.9639 4.8509 23 6 4.1048 -8.7314 4.4310 24 6 3.6664 -5.3660 0.5109 25 6 3.2474 -3.8951 0.6883 26 6 1.9079 -3.7211 -0.0048 27 1 1.9853 -4.0756 -1.0326 28 1 -0.4850 0.8400 0.0004 29 1 -0.5809 -2.0210 0.8457 30 1 -0.5626 -2.1710 -0.9327 31 1 -1.2859 -4.2561 0.7826 32 1 -0.5948 -4.5242 -0.8521 33 1 0.5136 -6.7045 0.9711 34 1 1.1399 -6.2126 -0.6279 35 1 4.9125 -7.6980 1.3709 36 1 4.5945 -6.6661 2.7859 37 1 4.6708 -10.3548 1.6895 38 1 4.5578 -11.8428 3.8491 39 1 3.9207 -7.8665 5.0511 40 1 4.5474 -5.5648 1.1211 41 1 3.9065 -5.5469 -0.5368 42 1 3.1534 -3.6618 1.7489 43 1 3.9877 -3.2407 0.2280 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036907434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:34 Heat of formation + Delta-G solvation = 71.215370 kcal Electronic energy + Delta-G solvation = -25237.292741 eV Core-core repulsion = 21705.865610 eV Total energy + Delta-G solvation = -3531.427131 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.19507 -40.34627 -38.40131 -35.58362 -34.19604 -32.78075 -31.71819 -30.11385 -29.55276 -28.63815 -27.40259 -25.00109 -23.57282 -22.55410 -21.46029 -21.41679 -20.23227 -19.99051 -19.21957 -17.77570 -17.42831 -16.42718 -15.80716 -15.73763 -15.19045 -14.77953 -14.45652 -14.39177 -14.04704 -13.97165 -13.76829 -13.49231 -13.31659 -12.99412 -12.84296 -12.58204 -12.47951 -11.76825 -11.60774 -11.54022 -10.96840 -10.88759 -10.84290 -10.46482 -10.23714 -10.17662 -10.09881 -9.99543 -9.72391 -9.60558 -9.51486 -8.74364 -8.70215 -8.60207 -6.93233 -5.79585 -3.13617 1.84448 2.31580 2.44311 2.95170 3.12332 3.33635 3.38038 3.40085 4.11997 4.31515 4.41256 4.59542 4.62519 4.68743 4.79590 4.91617 5.07869 5.20694 5.31010 5.36109 5.44093 5.47086 5.56138 5.66479 5.75549 5.88285 5.99386 6.02942 6.08807 6.09472 6.18608 6.33364 6.48806 6.51600 6.61059 6.67949 6.93498 6.97831 7.21297 7.46355 7.52691 7.72861 7.90600 7.97239 8.15980 9.10552 9.74328 10.41845 11.32745 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.027711 B = 0.003166 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.180016 B = 8840.809579 C = 9351.013823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.080 0.920 14 C 0.126 3.874 15 N -0.601 5.601 16 C 0.494 3.506 17 O -0.528 6.528 18 C 0.086 3.914 19 N -0.445 5.445 20 C -0.047 4.047 21 C -0.031 4.031 22 N -0.496 5.496 23 C 0.194 3.806 24 C 0.107 3.893 25 C -0.131 4.131 26 C 0.168 3.832 27 H 0.022 0.978 28 H 0.254 0.746 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.171 0.829 38 H 0.168 0.832 39 H 0.202 0.798 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.189 -14.520 1.132 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.175 4.175 12 C -0.144 4.144 13 H 0.098 0.902 14 C 0.005 3.995 15 N -0.335 5.335 16 C 0.279 3.721 17 O -0.404 6.404 18 C -0.041 4.041 19 N -0.128 5.128 20 C -0.180 4.180 21 C -0.178 4.178 22 N -0.214 5.214 23 C -0.089 4.089 24 C -0.016 4.016 25 C -0.170 4.170 26 C 0.060 3.940 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.188 0.812 38 H 0.185 0.815 39 H 0.219 0.781 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.564 -14.789 2.018 17.208 hybrid contribution 0.504 1.392 -1.012 1.793 sum 9.067 -13.397 1.006 16.208 Atomic orbital electron populations 1.69922 1.04928 1.25291 1.56609 1.24802 0.95677 0.97693 1.02118 0.86231 0.78506 0.83327 0.77864 1.21172 1.21586 1.21159 1.18927 0.90285 0.82288 1.44296 0.90422 1.44192 1.01656 0.99406 1.86655 1.21540 0.83889 0.88251 1.01070 1.22719 0.95758 0.99697 0.99343 1.22698 0.98046 0.93066 1.00638 0.90172 1.21674 0.81151 0.97393 0.99289 1.48332 1.10369 1.27179 1.47618 1.20669 0.90592 0.81477 0.79386 1.90771 1.46930 1.45930 1.56787 1.21800 0.96769 0.88842 0.96705 1.45051 1.52862 1.06751 1.08105 1.22655 1.10879 0.83320 1.01127 1.22234 1.07542 0.99683 0.88386 1.70283 1.19333 1.00330 1.31452 1.24969 1.04481 0.97853 0.81552 1.21889 0.88306 0.90900 1.00488 1.21962 0.99737 0.93087 1.02194 1.20742 0.90920 0.87348 0.95031 0.96119 0.93608 0.92678 0.94299 0.92010 0.92304 0.89225 0.91098 0.86099 0.85722 0.81164 0.81459 0.78105 0.90500 0.91109 0.91205 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.15 10.43 55.49 0.58 -25.58 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.18 29.55 -169.99 -5.02 16.16 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.23 -5.95 9.88 -15.06 -0.15 -6.10 16 8 H 0.08 1.90 7.21 -52.49 -0.38 1.52 16 9 N -0.59 -14.01 3.35 -162.72 -0.54 -14.55 16 10 C 0.18 4.07 5.45 -1.91 -0.01 4.06 16 11 C -0.14 -2.40 6.53 -25.13 -0.16 -2.56 16 12 C -0.12 -2.03 2.86 -89.19 -0.26 -2.29 16 13 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 14 C 0.13 1.75 5.96 -3.76 -0.02 1.73 16 15 N -0.60 -7.21 3.00 -172.48 -0.52 -7.73 16 16 C 0.49 6.02 7.74 -10.98 -0.09 5.93 16 17 O -0.53 -8.74 15.79 5.56 0.09 -8.65 16 18 C 0.09 0.70 4.96 -5.19 -0.03 0.67 16 19 N -0.44 -4.74 2.24 -119.86 -0.27 -5.00 16 20 C -0.05 -0.50 11.58 -16.56 -0.19 -0.69 16 21 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 22 N -0.50 -6.87 11.25 -14.67 -0.17 -7.03 16 23 C 0.19 2.29 12.56 -90.37 -1.14 1.16 16 24 C 0.11 1.08 6.21 -3.49 -0.02 1.06 16 25 C -0.13 -1.88 5.48 -26.83 -0.15 -2.03 16 26 C 0.17 3.04 2.59 -67.66 -0.18 2.87 16 27 H 0.02 0.40 7.94 -51.93 -0.41 -0.02 16 28 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.05 1.43 7.21 -51.93 -0.37 1.05 16 30 H 0.04 0.99 7.76 -51.93 -0.40 0.59 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 33 H 0.09 1.32 7.00 -51.92 -0.36 0.96 16 34 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 35 H 0.12 0.64 7.99 -51.93 -0.41 0.23 16 36 H 0.12 0.72 7.54 -51.93 -0.39 0.33 16 37 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.20 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.08 0.51 5.83 -51.93 -0.30 0.21 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 43 H 0.08 1.16 7.62 -51.93 -0.40 0.76 16 LS Contribution 343.44 15.07 5.18 5.18 Total: -1.00 -34.01 343.44 -9.74 -43.75 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.37 Total: 0.50 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -2.69 Total: 2.96 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.92 Total: -59.89 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.01 -9.74 -43.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036907434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.965 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds