Wall clock time and date at job start Fri Apr 10 2020 17:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48505 * 109.46677 * 240.00106 * 3 2 1 5 5 H 1.48501 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47416 * 120.00100 * 3 2 1 7 7 C 1.38811 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00527 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.48160 * 126.40142 * 0.02562 * 9 7 2 11 11 C 1.55297 * 107.03829 * 184.92587 * 10 9 7 12 12 C 1.53743 * 101.83998 * 22.48556 * 11 10 9 13 13 H 1.08996 * 111.31542 * 79.85006 * 12 11 10 14 14 C 1.52247 * 114.73509 * 207.24858 * 12 11 10 15 15 N 1.47715 * 106.36508 * 169.56856 * 14 12 11 16 16 C 1.34778 * 119.68162 * 127.92361 * 15 14 12 17 17 O 1.21279 * 120.00325 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00033 * 179.97438 * 16 15 14 19 19 N 1.46503 * 109.47225 * 179.97438 * 18 16 15 20 20 C 1.36880 * 126.40101 * 89.99665 * 19 18 16 21 21 C 1.34666 * 106.81960 * 180.02562 * 20 19 18 22 22 N 1.34126 * 108.01903 * 0.02562 * 21 20 19 23 23 C 1.30503 * 109.25981 * 359.72826 * 22 21 20 24 24 C 1.46595 * 120.63894 * 307.93503 * 15 14 12 25 25 C 1.53963 * 110.56760 * 47.82883 * 24 15 14 26 26 C 1.45459 * 126.40667 * 179.71408 * 9 7 2 27 27 H 1.09000 * 109.26349 * 266.19757 * 26 9 7 28 28 H 0.96998 * 120.00243 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.92500 * 304.27335 * 10 9 7 30 30 H 1.09004 * 109.91830 * 65.38281 * 10 9 7 31 31 H 1.09000 * 110.94833 * 140.61578 * 11 10 9 32 32 H 1.08992 * 110.95322 * 264.30772 * 11 10 9 33 33 H 1.09010 * 110.06722 * 288.77924 * 14 12 11 34 34 H 1.09004 * 110.07111 * 50.24713 * 14 12 11 35 35 H 1.09003 * 109.46791 * 299.99434 * 18 16 15 36 36 H 1.09000 * 109.47180 * 59.99420 * 18 16 15 37 37 H 1.08000 * 126.58698 * 0.03641 * 20 19 18 38 38 H 1.07993 * 125.98651 * 180.02562 * 21 20 19 39 39 H 1.08000 * 125.65268 * 180.29297 * 23 22 21 40 40 H 1.08996 * 109.26046 * 168.10557 * 24 15 14 41 41 H 1.08996 * 109.26084 * 287.58842 * 24 15 14 42 42 H 1.09001 * 109.88133 * 68.40744 * 25 24 15 43 43 H 1.09005 * 109.87808 * 189.48325 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1467 -2.5534 -0.0005 11 6 -0.4340 -4.0742 0.1274 12 6 0.8680 -4.5888 0.7629 13 1 0.8839 -4.4056 1.8372 14 6 1.2008 -6.0404 0.4467 15 7 2.5820 -6.2634 0.9205 16 6 2.8478 -7.3019 1.7375 17 8 1.9551 -8.0476 2.0805 18 6 4.2545 -7.5364 2.2247 19 7 4.2804 -8.7168 3.0920 20 6 4.4915 -10.0104 2.6973 21 6 4.4328 -10.7710 3.8071 22 7 4.1919 -9.9639 4.8509 23 6 4.1048 -8.7314 4.4310 24 6 3.6664 -5.3660 0.5109 25 6 3.2474 -3.8951 0.6883 26 6 1.9079 -3.7211 -0.0048 27 1 1.9853 -4.0756 -1.0326 28 1 -0.4850 0.8400 0.0004 29 1 -0.5809 -2.0210 0.8457 30 1 -0.5626 -2.1710 -0.9327 31 1 -1.2859 -4.2561 0.7826 32 1 -0.5948 -4.5242 -0.8521 33 1 0.5136 -6.7045 0.9711 34 1 1.1399 -6.2126 -0.6279 35 1 4.9125 -7.6980 1.3709 36 1 4.5945 -6.6661 2.7859 37 1 4.6708 -10.3548 1.6895 38 1 4.5578 -11.8428 3.8491 39 1 3.9207 -7.8665 5.0511 40 1 4.5474 -5.5648 1.1211 41 1 3.9065 -5.5469 -0.5368 42 1 3.1534 -3.6618 1.7489 43 1 3.9877 -3.2407 0.2280 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036907434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:33 Heat of formation + Delta-G solvation = 50.392204 kcal Electronic energy + Delta-G solvation = -25238.195701 eV Core-core repulsion = 21705.865610 eV Total energy + Delta-G solvation = -3532.330091 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.98160 -41.42290 -39.70321 -36.86390 -35.05574 -34.45087 -33.01675 -31.55958 -30.41931 -29.98029 -28.39651 -26.66299 -24.89897 -23.76267 -22.31597 -22.24246 -21.85026 -21.24604 -20.29007 -18.80645 -18.45244 -17.90943 -16.94485 -16.71212 -16.66997 -16.04307 -15.71248 -15.55836 -15.23402 -14.91271 -14.81257 -14.75592 -14.20449 -14.15928 -13.98363 -13.82424 -13.38516 -13.27989 -13.12728 -13.01695 -12.64181 -12.50303 -12.11902 -12.02643 -11.79469 -11.60558 -11.54221 -11.35867 -10.96856 -10.95027 -10.69052 -10.42121 -9.75883 -9.39477 -8.86834 -7.82352 -5.16884 1.04264 1.44034 1.47411 1.49883 1.55905 1.70882 2.11163 2.27826 2.51745 3.30691 3.37025 3.50433 3.79527 3.83787 3.88996 3.90130 3.98303 4.03770 4.12837 4.22287 4.23846 4.39748 4.50910 4.61049 4.65285 4.70375 4.79243 4.81363 4.82405 4.92661 5.02688 5.07127 5.23846 5.31558 5.43795 5.54333 5.55572 5.66050 5.76730 5.85535 6.18070 6.21671 6.34915 7.00562 7.09816 7.16428 7.81077 8.49844 9.29589 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.027711 B = 0.003166 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.180016 B = 8840.809579 C = 9351.013823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.073 4.073 3 Si 0.974 3.026 4 H -0.276 1.276 5 H -0.302 1.302 6 H -0.275 1.275 7 C -0.228 4.228 8 H 0.092 0.908 9 N -0.616 5.616 10 C 0.182 3.818 11 C -0.124 4.124 12 C -0.109 4.109 13 H 0.062 0.938 14 C 0.136 3.864 15 N -0.601 5.601 16 C 0.494 3.506 17 O -0.577 6.577 18 C 0.088 3.912 19 N -0.446 5.446 20 C -0.042 4.042 21 C -0.060 4.060 22 N -0.538 5.538 23 C 0.180 3.820 24 C 0.114 3.886 25 C -0.126 4.126 26 C 0.157 3.843 27 H 0.026 0.974 28 H 0.244 0.756 29 H 0.014 0.986 30 H 0.002 0.998 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.162 0.838 36 H 0.156 0.844 37 H 0.201 0.799 38 H 0.181 0.819 39 H 0.221 0.779 40 H 0.124 0.876 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.207 -15.881 0.436 20.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.265 4.265 3 Si 0.803 3.197 4 H -0.202 1.202 5 H -0.229 1.229 6 H -0.201 1.201 7 C -0.357 4.357 8 H 0.110 0.890 9 N -0.341 5.341 10 C 0.057 3.943 11 C -0.163 4.163 12 C -0.129 4.129 13 H 0.080 0.920 14 C 0.013 3.987 15 N -0.333 5.333 16 C 0.282 3.718 17 O -0.457 6.457 18 C -0.037 4.037 19 N -0.129 5.129 20 C -0.175 4.175 21 C -0.207 4.207 22 N -0.257 5.257 23 C -0.103 4.103 24 C -0.008 4.008 25 C -0.165 4.165 26 C 0.050 3.950 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.033 0.967 30 H 0.020 0.980 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.180 0.820 36 H 0.174 0.826 37 H 0.218 0.782 38 H 0.198 0.802 39 H 0.237 0.763 40 H 0.142 0.858 41 H 0.110 0.890 42 H 0.076 0.924 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.642 -16.176 1.311 19.972 hybrid contribution -0.460 1.785 -0.816 2.016 sum 11.182 -14.391 0.495 18.231 Atomic orbital electron populations 1.70164 1.06476 1.25105 1.58888 1.25642 0.96461 1.01098 1.03296 0.85210 0.77092 0.79087 0.78325 1.20152 1.22902 1.20133 1.19405 0.91156 0.83264 1.41840 0.89007 1.44492 1.02077 1.01063 1.86433 1.21280 0.84058 0.91502 0.97455 1.22586 0.97125 0.95652 1.00914 1.22509 0.96490 0.94818 0.99102 0.91965 1.21438 0.82615 0.94631 1.00023 1.48357 1.09871 1.27609 1.47506 1.21352 0.91850 0.80440 0.78163 1.90765 1.48915 1.47662 1.58340 1.22108 0.94308 0.89132 0.98147 1.45203 1.52205 1.07512 1.07938 1.23146 1.09226 0.83182 1.01962 1.22648 1.08588 1.00672 0.88742 1.70228 1.20703 1.01662 1.33062 1.25388 1.04339 0.97952 0.82604 1.22029 0.88707 0.87157 1.02904 1.21906 0.97286 0.96612 1.00743 1.21026 0.93480 0.84706 0.95813 0.95704 0.94718 0.96748 0.97956 0.90908 0.90407 0.90194 0.89714 0.82012 0.82621 0.78243 0.80191 0.76292 0.85808 0.89032 0.92444 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.94 10.43 21.65 0.23 -56.71 16 2 C -0.07 -3.99 5.49 84.86 0.47 -3.53 16 3 Si 0.97 44.13 29.55 68.60 2.03 46.16 16 4 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.23 -11.84 9.88 84.03 0.83 -11.01 16 8 H 0.09 4.39 7.21 -2.91 -0.02 4.37 16 9 N -0.62 -29.34 3.35 -668.73 -2.24 -31.57 16 10 C 0.18 8.76 5.45 86.85 0.47 9.23 16 11 C -0.12 -4.36 6.53 31.63 0.21 -4.15 16 12 C -0.11 -3.44 2.86 -9.87 -0.03 -3.47 16 13 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 14 C 0.14 3.41 5.96 85.90 0.51 3.92 16 15 N -0.60 -12.04 3.00 -818.00 -2.45 -14.49 16 16 C 0.49 10.17 7.74 87.66 0.68 10.85 16 17 O -0.58 -17.89 15.79 -3.03 -0.05 -17.94 16 18 C 0.09 0.97 4.96 85.63 0.42 1.40 16 19 N -0.45 -7.98 2.24 -533.13 -1.19 -9.17 16 20 C -0.04 -0.77 11.58 83.09 0.96 0.20 16 21 C -0.06 -1.34 11.87 83.52 0.99 -0.35 16 22 N -0.54 -14.45 11.25 -200.31 -2.25 -16.70 16 23 C 0.18 3.92 12.56 180.26 2.26 6.18 16 24 C 0.11 1.70 6.21 86.69 0.54 2.24 16 25 C -0.13 -3.25 5.48 30.53 0.17 -3.08 16 26 C 0.16 5.43 2.59 45.72 0.12 5.55 16 27 H 0.03 0.88 7.94 -2.39 -0.02 0.86 16 28 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.01 0.79 7.21 -2.39 -0.02 0.77 16 30 H 0.00 0.12 7.76 -2.38 -0.02 0.10 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.08 2.44 8.11 -2.39 -0.02 2.42 16 33 H 0.08 2.23 7.00 -2.38 -0.02 2.21 16 34 H 0.08 1.93 8.08 -2.38 -0.02 1.91 16 35 H 0.16 0.54 7.99 -2.39 -0.02 0.52 16 36 H 0.16 0.82 7.54 -2.39 -0.02 0.80 16 37 H 0.20 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 39 H 0.22 3.52 8.06 -2.91 -0.02 3.49 16 40 H 0.12 0.76 5.83 -2.39 -0.01 0.75 16 41 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 43 H 0.08 2.06 7.62 -2.38 -0.02 2.04 16 Total: -1.00 -79.66 343.44 3.67 -75.98 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 1.00 Total: 10.48 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 8.61 Total: 13.96 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -7.91 Total: -128.64 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.05 Total: -17.94 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -79.66 3.67 -75.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036907434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.376 kcal (2) G-P(sol) polarization free energy of solvation -79.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds