Wall clock time and date at job start Fri Apr 10 2020 17:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00122 * 2 1 4 4 H 1.48500 * 109.47036 * 274.97777 * 3 2 1 5 5 H 1.48497 * 109.47087 * 34.98381 * 3 2 1 6 6 H 1.48503 * 109.46875 * 154.97809 * 3 2 1 7 7 C 1.38815 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99770 * 186.72857 * 7 2 1 9 9 N 1.36934 * 120.00215 * 6.72997 * 7 2 1 10 10 C 1.47066 * 136.05619 * 356.10306 * 9 7 2 11 11 C 1.53617 * 88.00378 * 152.96787 * 10 9 7 12 12 C 1.47065 * 136.05919 * 176.16321 * 9 7 2 13 13 H 1.09000 * 113.47499 * 92.23921 * 12 9 7 14 14 C 1.53004 * 113.46625 * 321.86163 * 12 9 7 15 15 N 1.46497 * 109.47411 * 75.41012 * 14 12 9 16 16 C 1.34769 * 120.00390 * 180.02562 * 15 14 12 17 17 O 1.21282 * 119.99759 * 0.02562 * 16 15 14 18 18 C 1.50704 * 120.00243 * 179.97438 * 16 15 14 19 19 H 1.08996 * 109.47598 * 59.99279 * 18 16 15 20 20 C 1.53125 * 109.47410 * 180.02562 * 18 16 15 21 21 C 1.53349 * 109.52622 * 190.00889 * 20 18 16 22 22 C 1.50862 * 108.41726 * 310.02502 * 21 20 18 23 23 N 1.33578 * 128.03655 * 196.67088 * 22 21 20 24 24 C 1.30753 * 109.14790 * 179.91663 * 23 22 21 25 25 N 1.35316 * 108.76691 * 0.02671 * 24 23 22 26 26 H 0.96997 * 126.49553 * 180.02562 * 25 24 23 27 27 C 1.35028 * 123.98604 * 16.64895 * 22 21 20 28 28 C 1.50650 * 124.45423 * 0.19107 * 27 22 21 29 29 H 0.97005 * 119.99958 * 0.02562 * 1 2 3 30 30 H 1.09000 * 113.47301 * 267.69418 * 10 9 7 31 31 H 1.09000 * 113.46625 * 38.14063 * 10 9 7 32 32 H 1.08994 * 114.20607 * 272.45663 * 11 10 9 33 33 H 1.08996 * 114.23657 * 139.59180 * 11 10 9 34 34 H 1.09005 * 109.46690 * 315.41032 * 14 12 9 35 35 H 1.09000 * 109.47001 * 195.41488 * 14 12 9 36 36 H 0.97006 * 119.99574 * 0.02562 * 15 14 12 37 37 H 1.08998 * 109.45830 * 69.99209 * 20 18 16 38 38 H 1.08999 * 109.46048 * 310.02805 * 20 18 16 39 39 H 1.08996 * 109.68157 * 69.75939 * 21 20 18 40 40 H 1.09002 * 109.67391 * 190.29679 * 21 20 18 41 41 H 1.08003 * 125.61653 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.68716 * 136.12721 * 28 27 22 43 43 H 1.09007 * 109.67851 * 256.63743 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3925 2.1071 -1.3948 5 1 1.5043 2.6199 0.8027 6 1 3.5964 1.4120 0.5922 7 6 2.0101 -1.2022 0.0005 8 1 3.0846 -1.2054 0.1101 9 7 1.3325 -2.3841 -0.1379 10 6 -0.0773 -2.7911 -0.2360 11 6 0.3887 -4.0201 -1.0312 12 6 1.6942 -3.8049 -0.2529 13 1 1.7196 -4.3253 0.7045 14 6 2.9506 -4.0479 -1.0915 15 7 4.1360 -3.6801 -0.3132 16 6 5.3639 -3.8106 -0.8531 17 8 5.4875 -4.2321 -1.9836 18 6 6.5832 -3.4318 -0.0526 19 1 6.6273 -4.0387 0.8517 20 6 7.8406 -3.6738 -0.8923 21 6 9.0841 -3.5302 -0.0064 22 6 8.9797 -2.2318 0.7546 23 7 9.9504 -1.5699 1.3902 24 6 9.4517 -0.4856 1.9241 25 7 8.1303 -0.4279 1.6387 26 1 7.5116 0.2686 1.9090 27 6 7.8339 -1.5324 0.9006 28 6 6.5028 -1.9488 0.3309 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5247 -3.0418 0.7258 31 1 -0.6884 -2.1022 -0.8191 32 1 0.4753 -3.8514 -2.1045 33 1 -0.1355 -4.9417 -0.7784 34 1 2.9069 -3.4407 -1.9957 35 1 3.0074 -5.1017 -1.3640 36 1 4.0370 -3.3427 0.5909 37 1 7.8839 -2.9434 -1.7002 38 1 7.8085 -4.6789 -1.3129 39 1 9.1336 -4.3634 0.6945 40 1 9.9789 -3.5198 -0.6288 41 1 10.0036 0.2439 2.4983 42 1 5.7223 -1.8044 1.0780 43 1 6.2792 -1.3520 -0.5534 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038893611.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:09 Heat of formation + Delta-G solvation = 64.390958 kcal Electronic energy + Delta-G solvation = -25185.457568 eV Core-core repulsion = 21653.734509 eV Total energy + Delta-G solvation = -3531.723059 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.35594 -39.72862 -38.22847 -36.13629 -34.13207 -33.19965 -32.29868 -30.14401 -29.36942 -28.09727 -27.41497 -24.11274 -23.55331 -22.98744 -21.75966 -21.56799 -20.16726 -19.31667 -18.87715 -17.96305 -17.13244 -16.46469 -15.67651 -15.57787 -15.32799 -14.93279 -14.49135 -14.21324 -13.89792 -13.84690 -13.74314 -13.29151 -13.24621 -13.06916 -12.60483 -12.08758 -11.83493 -11.56985 -11.55888 -11.24671 -11.07907 -11.05673 -10.94256 -10.86017 -10.65174 -10.07273 -9.98611 -9.92021 -9.89855 -9.61937 -9.24037 -8.84850 -8.59747 -8.22838 -6.99021 -5.86746 -3.17997 1.94035 2.79578 3.01903 3.10363 3.25278 3.30630 3.35536 3.51583 4.31687 4.33561 4.62748 4.71969 4.78081 5.06590 5.10550 5.15056 5.19480 5.31122 5.33702 5.47859 5.51191 5.58238 5.64647 5.69088 5.85608 5.87259 5.96670 6.03717 6.07856 6.22010 6.27560 6.28921 6.35918 6.54223 6.67132 6.68170 6.85861 7.14541 7.28093 7.34322 7.49052 7.86127 7.88352 7.98332 8.52895 8.93036 9.60950 10.55178 11.30917 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.013415 B = 0.004725 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.765142 B = 5924.444703 C = 7649.120056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.213 4.213 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.128 3.872 13 H 0.048 0.952 14 C 0.121 3.879 15 N -0.713 5.713 16 C 0.515 3.485 17 O -0.547 6.547 18 C -0.098 4.098 19 H 0.100 0.900 20 C -0.097 4.097 21 C -0.032 4.032 22 C 0.001 3.999 23 N -0.487 5.487 24 C 0.173 3.827 25 N -0.559 5.559 26 H 0.422 0.578 27 C -0.017 4.017 28 C -0.037 4.037 29 H 0.254 0.746 30 H 0.025 0.975 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.401 0.599 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.207 0.793 42 H 0.084 0.916 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.345 -5.319 3.534 13.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.210 1.210 7 C -0.341 4.341 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.025 3.975 11 C -0.200 4.200 12 C 0.020 3.980 13 H 0.065 0.935 14 C -0.004 4.004 15 N -0.363 5.363 16 C 0.300 3.700 17 O -0.425 6.425 18 C -0.120 4.120 19 H 0.118 0.882 20 C -0.136 4.136 21 C -0.070 4.070 22 C -0.128 4.128 23 N -0.206 5.206 24 C -0.110 4.110 25 N -0.162 5.162 26 H 0.260 0.740 27 C -0.134 4.134 28 C -0.076 4.076 29 H 0.064 0.936 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.236 0.764 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.224 0.776 42 H 0.102 0.898 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.300 -5.511 2.800 14.666 hybrid contribution -0.781 2.028 0.894 2.350 sum 12.519 -3.483 3.694 13.509 Atomic orbital electron populations 1.69832 1.04964 1.25277 1.56153 1.24771 0.95592 0.97345 1.02578 0.86193 0.78346 0.84003 0.77624 1.21563 1.21757 1.20981 1.18806 0.90362 0.81494 1.43392 0.90334 1.45701 1.02662 0.98997 1.85382 1.22071 0.88653 0.91154 0.95627 1.23661 0.97167 0.99145 1.00051 1.22412 0.91970 0.88045 0.95588 0.93506 1.21808 0.83775 0.99124 0.95668 1.46008 1.05778 1.65664 1.18810 1.20398 0.84449 0.78016 0.87098 1.90671 1.86588 1.46403 1.18805 1.21298 0.94234 0.96447 1.00031 0.88231 1.21424 0.91125 1.03713 0.97315 1.19957 0.98519 0.91741 0.96818 1.20548 0.88735 0.99444 1.04113 1.69959 1.32100 1.05547 1.13036 1.25002 0.81544 0.99529 1.04877 1.42978 1.11203 1.20504 1.41476 0.74016 1.20893 0.98416 0.91118 1.02987 1.20043 0.91515 0.94937 1.01103 0.93632 0.95773 0.91035 0.90183 0.92298 0.91057 0.92269 0.76415 0.90972 0.89891 0.90642 0.90196 0.77636 0.89782 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.08 11.53 55.49 0.64 -25.44 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 21.01 29.56 -169.99 -5.02 15.98 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.21 -5.42 10.54 -15.06 -0.16 -5.58 16 8 H 0.08 1.88 7.68 -52.48 -0.40 1.47 16 9 N -0.60 -14.00 3.65 -176.79 -0.65 -14.64 16 10 C 0.15 3.33 7.42 -8.45 -0.06 3.27 16 11 C -0.16 -2.83 8.04 -26.15 -0.21 -3.04 16 12 C 0.13 2.34 4.10 -72.40 -0.30 2.04 16 13 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 14 C 0.12 2.08 5.52 -4.04 -0.02 2.06 16 15 N -0.71 -11.21 5.34 -60.29 -0.32 -11.53 16 16 C 0.52 8.03 7.13 -10.99 -0.08 7.95 16 17 O -0.55 -10.32 15.81 5.56 0.09 -10.23 16 18 C -0.10 -1.21 2.50 -91.50 -0.23 -1.44 16 19 H 0.10 1.07 8.12 -51.93 -0.42 0.65 16 20 C -0.10 -1.17 4.64 -26.49 -0.12 -1.29 16 21 C -0.03 -0.37 6.30 -27.62 -0.17 -0.54 16 22 C 0.00 0.02 6.98 -82.89 -0.58 -0.56 16 23 N -0.49 -6.68 11.25 -10.74 -0.12 -6.80 16 24 C 0.17 1.83 13.05 -89.91 -1.17 0.66 16 25 N -0.56 -5.87 6.15 -10.28 -0.06 -5.93 16 26 H 0.42 3.37 8.96 -40.82 -0.37 3.00 16 27 C -0.02 -0.22 7.08 -81.86 -0.58 -0.80 16 28 C -0.04 -0.47 5.43 -27.71 -0.15 -0.62 16 29 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.78 7.11 -51.93 -0.37 1.41 16 32 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.40 5.96 8.11 -40.82 -0.33 5.63 16 37 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 38 H 0.08 0.99 7.77 -51.93 -0.40 0.59 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.21 1.31 8.06 -52.48 -0.42 0.88 16 42 H 0.08 1.01 7.90 -51.93 -0.41 0.60 16 43 H 0.09 1.19 8.12 -51.92 -0.42 0.77 16 LS Contribution 352.19 15.07 5.31 5.31 Total: -1.00 -32.98 352.19 -10.56 -43.54 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.49 Total: 7.88 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -3.93 Total: 1.86 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: -0.51 Total: -64.34 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.98 -10.56 -43.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038893611.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.929 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds