Wall clock time and date at job start Fri Apr 10 2020 17:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00122 * 2 1 4 4 H 1.48500 * 109.47036 * 274.97777 * 3 2 1 5 5 H 1.48497 * 109.47087 * 34.98381 * 3 2 1 6 6 H 1.48503 * 109.46875 * 154.97809 * 3 2 1 7 7 C 1.38815 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99770 * 186.72857 * 7 2 1 9 9 N 1.36934 * 120.00215 * 6.72997 * 7 2 1 10 10 C 1.47066 * 136.05619 * 356.10306 * 9 7 2 11 11 C 1.53617 * 88.00378 * 152.96787 * 10 9 7 12 12 C 1.47065 * 136.05919 * 176.16321 * 9 7 2 13 13 H 1.09000 * 113.47499 * 92.23921 * 12 9 7 14 14 C 1.53004 * 113.46625 * 321.86163 * 12 9 7 15 15 N 1.46497 * 109.47411 * 75.41012 * 14 12 9 16 16 C 1.34769 * 120.00390 * 180.02562 * 15 14 12 17 17 O 1.21282 * 119.99759 * 0.02562 * 16 15 14 18 18 C 1.50704 * 120.00243 * 179.97438 * 16 15 14 19 19 H 1.08996 * 109.47598 * 59.99279 * 18 16 15 20 20 C 1.53125 * 109.47410 * 180.02562 * 18 16 15 21 21 C 1.53349 * 109.52622 * 190.00889 * 20 18 16 22 22 C 1.50862 * 108.41726 * 310.02502 * 21 20 18 23 23 N 1.33578 * 128.03655 * 196.67088 * 22 21 20 24 24 C 1.30753 * 109.14790 * 179.91663 * 23 22 21 25 25 N 1.35316 * 108.76691 * 0.02671 * 24 23 22 26 26 H 0.96997 * 126.49553 * 180.02562 * 25 24 23 27 27 C 1.35028 * 123.98604 * 16.64895 * 22 21 20 28 28 C 1.50650 * 124.45423 * 0.19107 * 27 22 21 29 29 H 0.97005 * 119.99958 * 0.02562 * 1 2 3 30 30 H 1.09000 * 113.47301 * 267.69418 * 10 9 7 31 31 H 1.09000 * 113.46625 * 38.14063 * 10 9 7 32 32 H 1.08994 * 114.20607 * 272.45663 * 11 10 9 33 33 H 1.08996 * 114.23657 * 139.59180 * 11 10 9 34 34 H 1.09005 * 109.46690 * 315.41032 * 14 12 9 35 35 H 1.09000 * 109.47001 * 195.41488 * 14 12 9 36 36 H 0.97006 * 119.99574 * 0.02562 * 15 14 12 37 37 H 1.08998 * 109.45830 * 69.99209 * 20 18 16 38 38 H 1.08999 * 109.46048 * 310.02805 * 20 18 16 39 39 H 1.08996 * 109.68157 * 69.75939 * 21 20 18 40 40 H 1.09002 * 109.67391 * 190.29679 * 21 20 18 41 41 H 1.08003 * 125.61653 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.68716 * 136.12721 * 28 27 22 43 43 H 1.09007 * 109.67851 * 256.63743 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3925 2.1071 -1.3948 5 1 1.5043 2.6199 0.8027 6 1 3.5964 1.4120 0.5922 7 6 2.0101 -1.2022 0.0005 8 1 3.0846 -1.2054 0.1101 9 7 1.3325 -2.3841 -0.1379 10 6 -0.0773 -2.7911 -0.2360 11 6 0.3887 -4.0201 -1.0312 12 6 1.6942 -3.8049 -0.2529 13 1 1.7196 -4.3253 0.7045 14 6 2.9506 -4.0479 -1.0915 15 7 4.1360 -3.6801 -0.3132 16 6 5.3639 -3.8106 -0.8531 17 8 5.4875 -4.2321 -1.9836 18 6 6.5832 -3.4318 -0.0526 19 1 6.6273 -4.0387 0.8517 20 6 7.8406 -3.6738 -0.8923 21 6 9.0841 -3.5302 -0.0064 22 6 8.9797 -2.2318 0.7546 23 7 9.9504 -1.5699 1.3902 24 6 9.4517 -0.4856 1.9241 25 7 8.1303 -0.4279 1.6387 26 1 7.5116 0.2686 1.9090 27 6 7.8339 -1.5324 0.9006 28 6 6.5028 -1.9488 0.3309 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5247 -3.0418 0.7258 31 1 -0.6884 -2.1022 -0.8191 32 1 0.4753 -3.8514 -2.1045 33 1 -0.1355 -4.9417 -0.7784 34 1 2.9069 -3.4407 -1.9957 35 1 3.0074 -5.1017 -1.3640 36 1 4.0370 -3.3427 0.5909 37 1 7.8839 -2.9434 -1.7002 38 1 7.8085 -4.6789 -1.3129 39 1 9.1336 -4.3634 0.6945 40 1 9.9789 -3.5198 -0.6288 41 1 10.0036 0.2439 2.4983 42 1 5.7223 -1.8044 1.0780 43 1 6.2792 -1.3520 -0.5534 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038893611.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:08 Heat of formation + Delta-G solvation = 42.912146 kcal Electronic energy + Delta-G solvation = -25186.388960 eV Core-core repulsion = 21653.734509 eV Total energy + Delta-G solvation = -3532.654451 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.23405 -41.01311 -39.79701 -37.18429 -35.51175 -34.25970 -34.06858 -31.16154 -30.34866 -29.91696 -28.79818 -25.38353 -25.12751 -24.13301 -23.06464 -22.48706 -21.44038 -20.87462 -19.89328 -18.92685 -18.62104 -17.84495 -17.06843 -16.98516 -16.55212 -16.19420 -15.80459 -15.56322 -15.23887 -14.97994 -14.87314 -14.60908 -14.49246 -14.22149 -13.73726 -13.52439 -13.29400 -13.02481 -12.89772 -12.71104 -12.59722 -12.54386 -12.30075 -12.05034 -11.91287 -11.81662 -11.60644 -11.20560 -10.92107 -10.82066 -10.80411 -10.62018 -9.96386 -9.13246 -8.88625 -7.86844 -5.17068 1.06525 1.40139 1.45666 1.51657 1.61843 2.12331 2.20722 2.31162 2.47397 3.36891 3.40696 3.48182 3.66477 3.78170 3.81568 3.95085 4.11674 4.17609 4.24345 4.30858 4.37538 4.42749 4.54331 4.60949 4.67974 4.72599 4.75914 4.88566 4.93418 5.06870 5.07781 5.12543 5.13335 5.28472 5.33666 5.34682 5.50704 5.60584 5.76842 5.78521 5.97564 6.53995 6.60728 6.94195 7.11625 7.27886 7.65915 8.66237 9.31596 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.013415 B = 0.004725 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.765142 B = 5924.444703 C = 7649.120056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.072 4.072 3 Si 0.963 3.037 4 H -0.300 1.300 5 H -0.301 1.301 6 H -0.256 1.256 7 C -0.202 4.202 8 H 0.092 0.908 9 N -0.628 5.628 10 C 0.141 3.859 11 C -0.136 4.136 12 C 0.135 3.865 13 H 0.070 0.930 14 C 0.130 3.870 15 N -0.710 5.710 16 C 0.516 3.484 17 O -0.581 6.581 18 C -0.088 4.088 19 H 0.123 0.877 20 C -0.090 4.090 21 C -0.027 4.027 22 C -0.016 4.016 23 N -0.526 5.526 24 C 0.186 3.814 25 N -0.554 5.554 26 H 0.433 0.567 27 C -0.033 4.033 28 C -0.031 4.031 29 H 0.244 0.756 30 H 0.022 0.978 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.408 0.592 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.246 0.754 42 H 0.090 0.910 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.061 -6.199 4.765 16.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.264 4.264 3 Si 0.793 3.207 4 H -0.228 1.228 5 H -0.228 1.228 6 H -0.180 1.180 7 C -0.330 4.330 8 H 0.110 0.890 9 N -0.354 5.354 10 C 0.015 3.985 11 C -0.175 4.175 12 C 0.029 3.971 13 H 0.087 0.913 14 C 0.005 3.995 15 N -0.360 5.360 16 C 0.304 3.696 17 O -0.461 6.461 18 C -0.110 4.110 19 H 0.141 0.859 20 C -0.129 4.129 21 C -0.065 4.065 22 C -0.145 4.145 23 N -0.245 5.245 24 C -0.097 4.097 25 N -0.157 5.157 26 H 0.274 0.726 27 C -0.150 4.150 28 C -0.069 4.069 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.243 0.757 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.262 0.738 42 H 0.108 0.892 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.036 -6.418 4.053 16.843 hybrid contribution -1.287 2.252 0.519 2.645 sum 13.749 -4.165 4.571 15.076 Atomic orbital electron populations 1.70021 1.06442 1.25072 1.58921 1.25524 0.96322 1.00490 1.04095 0.85274 0.78494 0.80220 0.76733 1.22789 1.22814 1.18000 1.19241 0.91130 0.82400 1.40250 0.89019 1.46038 1.03573 1.00566 1.85252 1.22080 0.87985 0.92599 0.95790 1.23491 0.96239 0.98533 0.99243 1.22541 0.92802 0.85177 0.96619 0.91281 1.21584 0.83967 0.99631 0.94350 1.45977 1.05536 1.65558 1.18921 1.20899 0.85030 0.76964 0.86756 1.90659 1.87061 1.47978 1.20438 1.21257 0.92528 0.96851 1.00315 0.85925 1.21340 0.91429 1.03153 0.96941 1.19938 0.98018 0.91732 0.96797 1.20858 0.89057 1.00158 1.04431 1.69964 1.32919 1.07072 1.14578 1.25806 0.81523 0.99033 1.03342 1.43001 1.11576 1.20258 1.40909 0.72627 1.20841 0.98072 0.92066 1.03986 1.19927 0.91980 0.94517 1.00522 0.94741 0.96030 0.94793 0.90389 0.88310 0.94078 0.90324 0.75691 0.92646 0.89843 0.89343 0.89992 0.73793 0.89168 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.02 11.53 21.65 0.25 -55.77 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 3 Si 0.96 43.39 29.56 68.60 2.03 45.42 16 4 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.20 -10.17 10.54 84.03 0.89 -9.28 16 8 H 0.09 4.25 7.68 -2.91 -0.02 4.22 16 9 N -0.63 -28.85 3.65 -713.25 -2.60 -31.45 16 10 C 0.14 6.24 7.42 83.22 0.62 6.86 16 11 C -0.14 -4.50 8.04 30.97 0.25 -4.25 16 12 C 0.13 4.64 4.10 41.79 0.17 4.81 16 13 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 14 C 0.13 4.23 5.52 86.38 0.48 4.71 16 15 N -0.71 -20.96 5.34 -463.06 -2.47 -23.43 16 16 C 0.52 15.35 7.13 87.66 0.63 15.98 16 17 O -0.58 -21.47 15.81 -3.04 -0.05 -21.52 16 18 C -0.09 -2.02 2.50 -11.37 -0.03 -2.05 16 19 H 0.12 2.29 8.12 -2.39 -0.02 2.27 16 20 C -0.09 -2.07 4.64 30.75 0.14 -1.93 16 21 C -0.03 -0.57 6.30 30.02 0.19 -0.38 16 22 C -0.02 -0.39 6.98 41.61 0.29 -0.10 16 23 N -0.53 -13.36 11.25 -187.89 -2.11 -15.47 16 24 C 0.19 3.41 13.05 180.10 2.35 5.76 16 25 N -0.55 -10.22 6.15 -186.45 -1.15 -11.37 16 26 H 0.43 5.72 8.96 -92.71 -0.83 4.89 16 27 C -0.03 -0.75 7.08 41.14 0.29 -0.46 16 28 C -0.03 -0.71 5.43 29.96 0.16 -0.55 16 29 H 0.24 14.11 8.31 -92.70 -0.77 13.34 16 30 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.03 1.74 7.11 -2.39 -0.02 1.72 16 32 H 0.08 2.62 8.12 -2.39 -0.02 2.60 16 33 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.41 11.10 8.11 -92.70 -0.75 10.35 16 37 H 0.05 1.44 8.11 -2.39 -0.02 1.42 16 38 H 0.08 1.90 7.77 -2.39 -0.02 1.88 16 39 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 40 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.25 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.09 1.96 7.90 -2.39 -0.02 1.94 16 43 H 0.07 1.85 8.12 -2.38 -0.02 1.83 16 Total: -1.00 -72.65 352.19 0.24 -72.41 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -0.55 Total: 25.47 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 6.89 Total: 15.72 kcal Atomic # 7 Polarization: -129.41 SS G_CDS: -8.09 Total: -137.49 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.05 Total: -21.52 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -72.65 0.24 -72.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038893611.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.320 kcal (2) G-P(sol) polarization free energy of solvation -72.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds