Wall clock time and date at job start Fri Apr 10 2020 17:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00442 * 2 1 4 4 H 1.48508 * 109.46943 * 274.98828 * 3 2 1 5 5 H 1.48498 * 109.46995 * 34.98849 * 3 2 1 6 6 H 1.48493 * 109.47191 * 154.99111 * 3 2 1 7 7 C 1.38814 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00076 * 185.03874 * 7 2 1 9 9 N 1.36936 * 119.99955 * 5.03689 * 7 2 1 10 10 C 1.47063 * 136.05985 * 353.17158 * 9 7 2 11 11 C 1.53492 * 87.98961 * 207.38373 * 10 9 7 12 12 C 1.47065 * 136.05908 * 173.54887 * 9 7 2 13 13 H 1.08997 * 113.47125 * 267.40168 * 12 9 7 14 14 C 1.53007 * 113.46440 * 37.77962 * 12 9 7 15 15 N 1.46496 * 109.47108 * 285.49492 * 14 12 9 16 16 C 1.34781 * 120.00088 * 180.02562 * 15 14 12 17 17 O 1.21283 * 119.99486 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00106 * 180.02562 * 16 15 14 19 19 H 1.08997 * 109.47214 * 60.00976 * 18 16 15 20 20 C 1.53124 * 109.47395 * 180.02562 * 18 16 15 21 21 C 1.53338 * 109.53601 * 189.99965 * 20 18 16 22 22 C 1.50866 * 108.41893 * 310.03586 * 21 20 18 23 23 N 1.33575 * 128.03493 * 196.75421 * 22 21 20 24 24 C 1.30749 * 109.14661 * 179.84331 * 23 22 21 25 25 N 1.35313 * 108.76876 * 0.02562 * 24 23 22 26 26 H 0.97005 * 126.49931 * 180.02562 * 25 24 23 27 27 C 1.35034 * 123.98640 * 16.63815 * 22 21 20 28 28 C 1.50654 * 124.45337 * 0.19161 * 27 22 21 29 29 H 0.97002 * 119.99494 * 359.97438 * 1 2 3 30 30 H 1.09002 * 113.46631 * 322.16821 * 10 9 7 31 31 H 1.09001 * 113.46614 * 92.60087 * 10 9 7 32 32 H 1.08999 * 114.20511 * 220.34593 * 11 10 9 33 33 H 1.08991 * 114.38656 * 87.53162 * 11 10 9 34 34 H 1.08993 * 109.47037 * 45.49706 * 14 12 9 35 35 H 1.09006 * 109.46728 * 165.50098 * 14 12 9 36 36 H 0.97002 * 120.00380 * 359.97438 * 15 14 12 37 37 H 1.09002 * 109.46036 * 310.02475 * 20 18 16 38 38 H 1.09004 * 109.45591 * 69.99054 * 20 18 16 39 39 H 1.09002 * 109.69386 * 190.29342 * 21 20 18 40 40 H 1.09009 * 109.69153 * 69.77752 * 21 20 18 41 41 H 1.08000 * 125.62016 * 179.97438 * 24 23 22 42 42 H 1.08997 * 109.68203 * 256.67329 * 28 27 22 43 43 H 1.08996 * 109.68253 * 136.12070 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1072 -1.3949 5 1 1.5045 2.6199 0.8028 6 1 3.5966 1.4119 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0871 -1.2041 0.0816 9 7 1.3294 -2.3857 -0.1052 10 6 -0.0820 -2.7987 -0.1095 11 6 0.3696 -4.1563 0.4463 12 6 1.6881 -3.8040 -0.2560 13 1 1.7286 -4.1335 -1.2942 14 6 2.9308 -4.2062 0.5409 15 7 4.1273 -3.6835 -0.1235 16 6 5.3462 -3.9162 0.4025 17 8 5.4524 -4.5579 1.4262 18 6 6.5770 -3.3781 -0.2806 19 1 6.5167 -2.2911 -0.3345 20 6 7.8207 -3.7817 0.5161 21 6 9.0436 -3.0341 -0.0287 22 6 9.0768 -3.2030 -1.5275 23 7 10.1019 -2.9906 -2.3572 24 6 9.7250 -3.2548 -3.5810 25 7 8.4303 -3.6477 -3.5625 26 1 7.8945 -3.9051 -4.3291 27 6 8.0224 -3.6137 -2.2644 28 6 6.6688 -3.9560 -1.6986 29 1 -0.4849 0.8401 0.0004 30 1 -0.7026 -2.2306 0.5835 31 1 -0.5132 -2.8604 -1.1087 32 1 -0.1516 -5.0112 0.0156 33 1 0.4391 -4.1970 1.5332 34 1 2.8655 -3.7947 1.5480 35 1 2.9912 -5.2932 0.5956 36 1 4.0424 -3.1706 -0.9425 37 1 7.6777 -3.5273 1.5663 38 1 7.9799 -4.8559 0.4211 39 1 9.9523 -3.4491 0.4075 40 1 8.9677 -1.9754 0.2197 41 1 10.3447 -3.1722 -4.4617 42 1 6.5493 -5.0388 -1.6621 43 1 5.8890 -3.5209 -2.3236 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038893612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:14 Heat of formation + Delta-G solvation = 64.917546 kcal Electronic energy + Delta-G solvation = -24949.297563 eV Core-core repulsion = 21417.597338 eV Total energy + Delta-G solvation = -3531.700225 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.43296 -39.73603 -38.22730 -36.16519 -34.13174 -33.28515 -32.26844 -30.19563 -29.42264 -28.07042 -27.41662 -24.17641 -23.51839 -23.01418 -21.80822 -21.61701 -20.17625 -19.31884 -18.92526 -18.05533 -17.12785 -16.39512 -15.71450 -15.65819 -15.32980 -14.94740 -14.56543 -14.10100 -14.01466 -13.84750 -13.71502 -13.39285 -13.35100 -12.95587 -12.68607 -12.13191 -11.80607 -11.63935 -11.54417 -11.14233 -11.10925 -11.02438 -10.96516 -10.82864 -10.59578 -10.05597 -10.02841 -9.98689 -9.89547 -9.60565 -9.19574 -8.86754 -8.58839 -8.30388 -6.94022 -5.83666 -3.15497 1.84891 2.76540 2.96166 3.02717 3.33749 3.39644 3.41867 3.51215 4.26965 4.38593 4.56233 4.63824 4.75060 5.02515 5.05518 5.13162 5.16365 5.28327 5.35718 5.40036 5.47878 5.52984 5.63710 5.69134 5.80955 5.86891 5.91986 6.02401 6.06655 6.18007 6.25051 6.28157 6.36479 6.55373 6.61872 6.68381 6.86343 7.18715 7.19209 7.33281 7.52866 7.86730 7.91574 7.91956 8.53049 8.97239 9.64696 10.58252 11.34072 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.014332 B = 0.003946 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.240409 B = 7094.259897 C = 7994.437313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.905 3.095 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.217 4.217 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.154 3.846 11 C -0.162 4.162 12 C 0.127 3.873 13 H 0.047 0.953 14 C 0.121 3.879 15 N -0.713 5.713 16 C 0.516 3.484 17 O -0.547 6.547 18 C -0.102 4.102 19 H 0.104 0.896 20 C -0.096 4.096 21 C -0.035 4.035 22 C 0.007 3.993 23 N -0.487 5.487 24 C 0.174 3.826 25 N -0.560 5.560 26 H 0.420 0.580 27 C -0.023 4.023 28 C -0.032 4.032 29 H 0.254 0.746 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.402 0.598 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.207 0.793 42 H 0.083 0.917 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.901 -9.680 -7.090 17.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.735 3.265 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.344 4.344 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.029 3.971 11 C -0.201 4.201 12 C 0.019 3.981 13 H 0.064 0.936 14 C -0.004 4.004 15 N -0.362 5.362 16 C 0.301 3.699 17 O -0.425 6.425 18 C -0.124 4.124 19 H 0.122 0.878 20 C -0.135 4.135 21 C -0.073 4.073 22 C -0.123 4.123 23 N -0.206 5.206 24 C -0.108 4.108 25 N -0.163 5.163 26 H 0.258 0.742 27 C -0.139 4.139 28 C -0.071 4.071 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.237 0.763 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.224 0.776 42 H 0.101 0.899 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 13.803 -9.476 -6.055 17.804 hybrid contribution -0.662 0.944 -1.482 1.877 sum 13.141 -8.531 -7.537 17.386 Atomic orbital electron populations 1.69848 1.05040 1.25360 1.55942 1.24812 0.95623 0.97441 1.02331 0.86205 0.78900 0.83872 0.77489 1.21671 1.21640 1.20490 1.18854 0.90542 0.81387 1.43595 0.90111 1.45639 1.02567 0.99967 1.84541 1.21966 0.88624 0.89092 0.97451 1.23677 0.97098 0.98935 1.00399 1.22409 0.91949 0.87628 0.96104 0.93586 1.21802 0.83631 0.97300 0.97656 1.46010 1.05868 1.55440 1.28924 1.20375 0.84525 0.80048 0.84939 1.90670 1.86812 1.40667 1.24373 1.21333 0.94159 1.02515 0.94375 0.87834 1.21411 0.91352 1.00778 0.99922 1.19993 0.98684 1.01167 0.87487 1.20588 0.89448 1.05796 0.96448 1.69973 1.30202 1.20540 0.99843 1.25019 0.83715 1.04065 0.98031 1.42930 1.12859 1.52100 1.08419 0.74243 1.20860 0.98560 1.10406 0.84078 1.19996 0.91071 1.01545 0.94491 0.93642 0.91402 0.95593 0.92385 0.90209 0.91125 0.92316 0.76306 0.89761 0.91100 0.90129 0.90417 0.77607 0.89884 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.43 11.63 55.49 0.65 -25.79 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.91 21.56 29.56 -169.99 -5.02 16.54 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.22 -5.65 10.54 -15.06 -0.16 -5.80 16 8 H 0.08 2.02 7.61 -52.49 -0.40 1.62 16 9 N -0.60 -14.18 3.65 -177.04 -0.65 -14.83 16 10 C 0.15 3.44 7.31 -8.53 -0.06 3.38 16 11 C -0.16 -2.85 8.03 -26.22 -0.21 -3.06 16 12 C 0.13 2.34 4.10 -72.41 -0.30 2.04 16 13 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 14 C 0.12 2.08 5.52 -4.04 -0.02 2.06 16 15 N -0.71 -11.25 5.23 -60.29 -0.32 -11.57 16 16 C 0.52 8.05 7.13 -10.98 -0.08 7.97 16 17 O -0.55 -10.32 15.81 5.56 0.09 -10.23 16 18 C -0.10 -1.26 2.51 -91.50 -0.23 -1.49 16 19 H 0.10 1.29 8.12 -51.93 -0.42 0.87 16 20 C -0.10 -1.16 4.64 -26.49 -0.12 -1.28 16 21 C -0.04 -0.40 6.30 -27.63 -0.17 -0.58 16 22 C 0.01 0.09 6.98 -82.89 -0.58 -0.49 16 23 N -0.49 -6.36 11.25 -10.74 -0.12 -6.48 16 24 C 0.17 1.64 13.05 -89.92 -1.17 0.47 16 25 N -0.56 -4.78 6.14 -10.28 -0.06 -4.84 16 26 H 0.42 2.14 8.96 -40.82 -0.37 1.78 16 27 C -0.02 -0.25 7.08 -81.85 -0.58 -0.83 16 28 C -0.03 -0.33 5.43 -27.70 -0.15 -0.48 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.07 1.70 7.32 -51.93 -0.38 1.32 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.40 6.04 8.15 -40.82 -0.33 5.70 16 37 H 0.08 1.07 7.76 -51.93 -0.40 0.67 16 38 H 0.07 0.87 8.12 -51.93 -0.42 0.44 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 41 H 0.21 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.08 0.83 8.11 -51.93 -0.42 0.41 16 43 H 0.08 0.75 7.90 -51.93 -0.41 0.34 16 LS Contribution 352.23 15.07 5.31 5.31 Total: -1.00 -33.93 352.23 -10.56 -44.49 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.49 Total: 5.74 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -3.93 Total: 1.67 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: -0.50 Total: -63.51 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.93 -10.56 -44.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038893612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.405 kcal (2) G-P(sol) polarization free energy of solvation -33.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds