Wall clock time and date at job start Fri Apr 10 2020 17:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00516 * 2 1 4 4 H 1.48500 * 109.47148 * 264.93354 * 3 2 1 5 5 H 1.48496 * 109.47319 * 144.93270 * 3 2 1 6 6 H 1.48507 * 109.47198 * 24.93056 * 3 2 1 7 7 C 1.38820 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00025 * 205.45753 * 7 2 1 9 9 N 1.37051 * 119.99859 * 25.46017 * 7 2 1 10 10 C 1.44804 * 120.21952 * 5.93273 * 9 7 2 11 11 C 1.51407 * 113.21785 * 268.59149 * 10 9 7 12 12 C 1.51216 * 114.22490 * 297.16441 * 11 10 9 13 13 H 1.09746 * 110.69806 * 177.71985 * 12 11 10 14 14 C 1.54104 * 108.37942 * 299.64169 * 12 11 10 15 15 C 1.53990 * 104.84103 * 93.44262 * 14 12 11 16 16 C 1.52087 * 105.61956 * 10.99266 * 15 14 12 17 17 H 1.09310 * 108.35499 * 123.69962 * 16 15 14 18 18 C 1.49329 * 120.13360 * 185.62923 * 9 7 2 19 19 N 1.47728 * 109.47503 * 5.66352 * 16 15 14 20 20 C 1.35024 * 127.13445 * 158.80298 * 19 16 15 21 21 O 1.21284 * 120.00151 * 180.58183 * 20 19 16 22 22 C 1.50695 * 119.99820 * 0.58602 * 20 19 16 23 23 N 1.46504 * 109.47412 * 179.97438 * 22 20 19 24 24 C 1.34953 * 126.03959 * 124.70997 * 23 22 20 25 25 C 1.35316 * 107.74477 * 179.84431 * 24 23 22 26 26 C 1.39868 * 107.91883 * 0.42811 * 25 24 23 27 27 N 1.30828 * 108.20685 * 359.73570 * 26 25 24 28 28 H 0.97003 * 119.99530 * 0.02562 * 1 2 3 29 29 H 1.09221 * 108.61830 * 29.45798 * 10 9 7 30 30 H 1.09024 * 108.95612 * 147.04759 * 10 9 7 31 31 H 1.09129 * 108.87275 * 59.03598 * 11 10 9 32 32 H 1.09363 * 108.39626 * 176.20125 * 11 10 9 33 33 H 1.09320 * 110.66441 * 212.60076 * 14 12 11 34 34 H 1.09336 * 110.64259 * 334.28000 * 14 12 11 35 35 H 1.09095 * 110.67647 * 251.42940 * 15 14 12 36 36 H 1.09282 * 110.20189 * 129.96746 * 15 14 12 37 37 H 1.09096 * 109.50398 * 252.82905 * 18 9 7 38 38 H 1.09007 * 109.66394 * 12.73708 * 18 9 7 39 39 H 1.09003 * 109.47333 * 299.99723 * 22 20 19 40 40 H 1.09005 * 109.47780 * 59.99956 * 22 20 19 41 41 H 1.08000 * 126.12294 * 0.02562 * 24 23 22 42 42 H 1.07996 * 126.03786 * 180.16370 * 25 24 23 43 43 H 1.08000 * 125.89572 * 179.71698 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6049 1.9844 -1.3946 5 1 3.4902 1.4733 0.8044 6 1 1.3983 2.6812 0.5902 7 6 2.0102 -1.2023 0.0005 8 1 3.0115 -1.2476 0.4026 9 7 1.4246 -2.3317 -0.5092 10 6 0.1360 -2.2521 -1.1648 11 6 -1.0280 -2.4744 -0.2224 12 6 -1.0598 -3.8471 0.4113 13 1 -1.9005 -3.9315 1.1117 14 6 -1.1690 -4.8978 -0.7108 15 6 0.2853 -5.3024 -1.0150 16 6 1.1208 -4.6987 0.1032 17 1 1.6831 -5.5026 0.5853 18 6 2.1162 -3.6505 -0.3971 19 7 0.2288 -4.0858 1.1087 20 6 0.5213 -3.8099 2.3977 21 8 -0.3185 -3.3116 3.1169 22 6 1.8914 -4.1212 2.9426 23 7 1.9562 -3.7310 4.3532 24 6 2.3000 -4.5319 5.3836 25 6 2.2401 -3.7947 6.5167 26 6 1.8367 -2.5016 6.1681 27 7 1.6662 -2.4622 4.8716 28 1 -0.4849 0.8401 -0.0004 29 1 0.0360 -1.2635 -1.6183 30 1 0.0970 -2.9962 -1.9607 31 1 -0.9911 -1.7224 0.5676 32 1 -1.9569 -2.3305 -0.7812 33 1 -1.7449 -5.7637 -0.3737 34 1 -1.6404 -4.4666 -1.5980 35 1 0.6006 -4.9080 -1.9821 36 1 0.3825 -6.3909 -1.0126 37 1 2.4967 -3.9466 -1.3757 38 1 2.9476 -3.5703 0.3033 39 1 2.0844 -5.1901 2.8518 40 1 2.6416 -3.5673 2.3780 41 1 2.5765 -5.5736 5.3155 42 1 2.4602 -4.1443 7.5145 43 1 1.6907 -1.6780 6.8513 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039332836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:28 Heat of formation + Delta-G solvation = 102.650166 kcal Electronic energy + Delta-G solvation = -26901.114752 eV Core-core repulsion = 23371.050736 eV Total energy + Delta-G solvation = -3530.064016 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.87271 -39.94673 -37.50790 -34.70951 -33.22449 -32.21703 -31.28269 -30.68566 -29.75448 -27.20126 -27.14041 -25.36287 -23.73546 -22.09716 -20.97437 -20.79376 -20.45540 -19.32367 -18.24269 -17.05690 -16.85948 -16.35904 -15.35891 -15.09923 -14.66918 -14.62074 -14.06219 -13.65716 -13.42857 -13.37155 -13.30527 -13.12124 -12.69868 -12.62040 -12.52868 -12.11180 -11.91210 -11.51993 -11.26993 -11.15719 -10.84050 -10.65644 -10.56068 -10.29937 -10.20485 -10.12409 -9.98095 -9.70445 -9.52443 -9.03503 -8.92373 -8.32284 -8.29509 -7.88788 -6.85953 -5.69607 -3.00630 2.19435 2.70047 3.16207 3.19858 3.44467 3.51282 3.53063 3.59970 4.50957 4.68549 4.80566 4.87411 4.97297 5.14138 5.19711 5.30278 5.41850 5.43651 5.47675 5.67761 5.74693 5.79280 5.83696 6.00141 6.04525 6.16060 6.19153 6.23521 6.25697 6.38848 6.41705 6.54508 6.71249 6.80452 6.94043 7.09037 7.23149 7.31200 7.66488 7.78086 8.08506 8.19035 8.22920 8.38995 8.78602 9.31194 9.88597 10.35265 11.32340 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.011426 B = 0.007370 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.978161 B = 3798.304915 C = 5360.493539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.004 3.996 3 Si 0.895 3.105 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.294 1.294 7 C -0.251 4.251 8 H 0.070 0.930 9 N -0.586 5.586 10 C 0.190 3.810 11 C -0.146 4.146 12 C 0.144 3.856 13 H 0.071 0.929 14 C -0.125 4.125 15 C -0.116 4.116 16 C 0.109 3.891 17 H 0.058 0.942 18 C 0.129 3.871 19 N -0.585 5.585 20 C 0.535 3.465 21 O -0.520 6.520 22 C 0.121 3.879 23 N -0.355 5.355 24 C 0.043 3.957 25 C -0.276 4.276 26 C 0.027 3.973 27 N -0.246 5.246 28 H 0.251 0.749 29 H 0.077 0.923 30 H 0.001 0.999 31 H 0.113 0.887 32 H 0.035 0.965 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.035 0.965 38 H 0.051 0.949 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.169 0.831 42 H 0.143 0.857 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.909 -14.062 2.310 14.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.194 4.194 3 Si 0.725 3.275 4 H -0.218 1.218 5 H -0.209 1.209 6 H -0.220 1.220 7 C -0.380 4.380 8 H 0.088 0.912 9 N -0.309 5.309 10 C 0.064 3.936 11 C -0.186 4.186 12 C 0.042 3.958 13 H 0.089 0.911 14 C -0.164 4.164 15 C -0.154 4.154 16 C 0.003 3.997 17 H 0.076 0.924 18 C 0.002 3.998 19 N -0.319 5.319 20 C 0.321 3.679 21 O -0.395 6.395 22 C -0.004 4.004 23 N -0.137 5.137 24 C -0.103 4.103 25 C -0.305 4.305 26 C -0.160 4.160 27 N -0.066 5.066 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.020 0.980 31 H 0.131 0.869 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.186 0.814 42 H 0.161 0.839 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.053 -12.924 1.663 13.192 hybrid contribution 0.661 0.300 0.768 1.057 sum 2.714 -12.624 2.431 13.140 Atomic orbital electron populations 1.70122 1.04870 1.24807 1.53767 1.24642 0.95199 0.97816 1.01703 0.86391 0.79295 0.84365 0.77409 1.21760 1.20887 1.22009 1.19184 0.97062 0.85895 1.35846 0.91203 1.44340 1.18809 1.01472 1.66241 1.19893 0.83280 0.99341 0.91051 1.22180 0.98319 0.95083 1.03047 1.21719 0.85437 0.96655 0.92011 0.91097 1.22506 0.96310 0.98382 0.99166 1.21985 0.95141 0.99533 0.98712 1.21988 0.92713 0.95127 0.89886 0.92368 1.21915 0.93375 0.86519 0.97973 1.48511 1.14275 1.61053 1.08028 1.19592 0.88706 0.78952 0.80601 1.90739 1.48962 1.42537 1.57269 1.21481 0.98492 1.01710 0.78764 1.48185 1.51692 1.08095 1.05766 1.22461 1.02398 0.97595 0.87828 1.21396 1.15810 0.94635 0.98707 1.23918 1.00701 0.98110 0.93320 1.77750 1.19096 0.99248 1.10498 0.93884 0.90484 0.98045 0.86902 0.94607 0.92275 0.90276 0.90122 0.91617 0.94740 0.93060 0.86979 0.86558 0.81399 0.83928 0.80442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 8.36 55.49 0.46 -24.85 16 2 C 0.00 0.11 4.90 -17.43 -0.09 0.03 16 3 Si 0.89 22.33 29.62 -169.99 -5.04 17.29 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 7 C -0.25 -6.68 9.73 -15.00 -0.15 -6.83 16 8 H 0.07 1.86 7.88 -52.49 -0.41 1.44 16 9 N -0.59 -13.52 2.57 -173.03 -0.44 -13.96 16 10 C 0.19 4.31 4.47 -5.75 -0.03 4.29 16 11 C -0.15 -3.25 4.53 -28.43 -0.13 -3.37 16 12 C 0.14 2.74 3.53 -67.17 -0.24 2.50 16 13 H 0.07 1.42 8.08 -51.51 -0.42 1.01 16 14 C -0.13 -1.79 6.00 -25.64 -0.15 -1.95 16 15 C -0.12 -1.51 5.74 -26.68 -0.15 -1.66 16 16 C 0.11 1.66 2.59 -67.74 -0.18 1.48 16 17 H 0.06 0.71 7.70 -51.75 -0.40 0.31 16 18 C 0.13 2.31 6.05 -2.49 -0.02 2.29 16 19 N -0.58 -10.98 2.26 -156.59 -0.35 -11.34 16 20 C 0.54 11.09 7.91 -10.88 -0.09 11.00 16 21 O -0.52 -13.19 16.04 5.55 0.09 -13.10 16 22 C 0.12 1.99 6.10 -5.19 -0.03 1.96 16 23 N -0.35 -6.32 3.40 -62.54 -0.21 -6.53 16 24 C 0.04 0.59 11.45 -17.22 -0.20 0.40 16 25 C -0.28 -3.84 10.80 -40.01 -0.43 -4.27 16 26 C 0.03 0.45 12.02 -17.37 -0.21 0.24 16 27 N -0.25 -5.15 11.64 30.62 0.36 -4.80 16 28 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.08 2.02 6.03 -51.80 -0.31 1.71 16 30 H 0.00 0.03 5.70 -51.92 -0.30 -0.27 16 31 H 0.11 3.14 6.03 -51.86 -0.31 2.83 16 32 H 0.04 0.75 8.12 -51.72 -0.42 0.33 16 33 H 0.06 0.74 8.17 -51.75 -0.42 0.32 16 34 H 0.08 1.10 7.65 -51.74 -0.40 0.70 16 35 H 0.08 1.07 6.55 -51.88 -0.34 0.73 16 36 H 0.07 0.68 8.17 -51.77 -0.42 0.26 16 37 H 0.03 0.57 7.81 -51.87 -0.40 0.16 16 38 H 0.05 0.89 6.81 -51.92 -0.35 0.53 16 39 H 0.11 1.29 7.87 -51.93 -0.41 0.88 16 40 H 0.12 1.99 6.95 -51.93 -0.36 1.63 16 41 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 43 H 0.18 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -34.90 333.02 -8.28 -43.18 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -6.08 Total: 2.99 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -2.08 Total: 6.10 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -0.19 Total: -61.47 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.04 Total: 17.29 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.90 -8.28 -43.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039332836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.826 kcal (2) G-P(sol) polarization free energy of solvation -34.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds