Wall clock time and date at job start Fri Apr 10 2020 17:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30858 * 125.41696 * 2 1 4 4 C 1.33323 * 109.68387 * 180.02562 * 3 2 1 5 5 C 1.36658 * 107.78848 * 0.02562 * 4 3 2 6 6 C 1.46763 * 126.84584 * 179.97438 * 5 4 3 7 7 O 1.21679 * 120.00247 * 24.64602 * 6 5 4 8 8 N 1.34776 * 119.99771 * 204.65624 * 6 5 4 9 9 C 1.46952 * 120.44544 * 1.61565 * 8 6 5 10 10 C 1.53597 * 108.52049 * 125.72084 * 9 8 6 11 11 H 1.08998 * 110.59669 * 172.17932 * 10 9 8 12 12 C 1.53364 * 108.68676 * 294.38111 * 10 9 8 13 13 C 1.53456 * 109.22324 * 60.41599 * 12 10 9 14 14 C 1.53016 * 109.91990 * 60.29963 * 13 12 10 15 15 C 1.53368 * 109.24935 * 299.64454 * 14 13 12 16 16 H 1.08999 * 111.08880 * 177.84865 * 15 14 13 17 17 C 1.46948 * 120.44390 * 181.60271 * 8 6 5 18 18 N 1.47564 * 107.98221 * 56.39335 * 15 14 13 19 19 C 1.36937 * 121.61280 * 122.27258 * 18 15 14 20 20 H 1.08008 * 119.99877 * 31.05411 * 19 18 15 21 21 C 1.38805 * 120.00334 * 211.05052 * 19 18 15 22 22 N 1.31619 * 119.99828 * 29.35761 * 21 19 18 23 23 Si 1.86804 * 120.00333 * 209.35902 * 21 19 18 24 24 H 1.48494 * 109.47041 * 90.00175 * 23 21 19 25 25 H 1.48499 * 109.47008 * 210.00282 * 23 21 19 26 26 H 1.48499 * 109.46937 * 330.00132 * 23 21 19 27 27 N 1.34498 * 125.41819 * 180.32169 * 2 1 3 28 28 H 0.97001 * 126.47560 * 359.97438 * 27 2 1 29 29 H 1.08994 * 109.47752 * 89.97919 * 1 2 3 30 30 H 1.09009 * 109.47069 * 209.97302 * 1 2 3 31 31 H 1.09004 * 109.47440 * 329.96953 * 1 2 3 32 32 H 1.08000 * 126.10529 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.62640 * 6.01627 * 9 8 6 34 34 H 1.08994 * 109.62942 * 245.43199 * 9 8 6 35 35 H 1.09004 * 109.50120 * 180.24623 * 12 10 9 36 36 H 1.08997 * 109.50139 * 300.36351 * 12 10 9 37 37 H 1.09006 * 109.16991 * 300.28494 * 13 12 10 38 38 H 1.08999 * 109.49065 * 180.51957 * 13 12 10 39 39 H 1.09003 * 109.50889 * 179.70736 * 14 13 12 40 40 H 1.09006 * 109.54227 * 59.60054 * 14 13 12 41 41 H 1.08999 * 109.61804 * 353.96485 * 17 8 6 42 42 H 1.08997 * 109.62505 * 114.53175 * 17 8 6 43 43 H 0.97002 * 120.00483 * 5.75253 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5486 0.7049 -0.0006 5 6 3.5976 -0.6608 -0.0015 6 6 4.8029 -1.4982 -0.0029 7 8 5.8493 -1.0591 0.4361 8 7 4.7506 -2.7535 -0.4907 9 6 3.5011 -3.2814 -1.0558 10 6 3.7859 -3.7942 -2.4753 11 1 2.9176 -4.3176 -2.8754 12 6 4.1679 -2.6018 -3.3610 13 6 5.4263 -1.9326 -2.7922 14 6 6.5842 -2.9326 -2.7708 15 6 6.2062 -4.1250 -1.8834 16 1 6.9968 -4.8754 -1.8770 17 6 5.9426 -3.6126 -0.4647 18 7 4.9496 -4.6988 -2.4023 19 6 4.8658 -6.0089 -2.7918 20 1 5.4758 -6.7566 -2.3067 21 6 3.9967 -6.3760 -3.8100 22 7 3.7001 -5.5183 -4.7632 23 14 3.2481 -8.0874 -3.8274 24 1 1.9672 -8.0750 -3.0761 25 1 2.9950 -8.5027 -5.2305 26 1 4.1869 -9.0448 -3.1894 27 7 2.2864 -1.0961 -0.0062 28 1 1.9850 -2.0180 -0.0110 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3634 -0.8903 0.5135 31 1 -0.3634 0.8897 0.5143 32 1 4.3977 1.3722 -0.0003 33 1 2.7538 -2.4889 -1.0959 34 1 3.1367 -4.1011 -0.4366 35 1 4.3689 -2.9507 -4.3740 36 1 3.3478 -1.8841 -3.3787 37 1 5.2228 -1.5922 -1.7768 38 1 5.6965 -1.0787 -3.4134 39 1 7.4755 -2.4491 -2.3706 40 1 6.7834 -3.2816 -3.7841 41 1 6.8006 -3.0376 -0.1165 42 1 5.7702 -4.4579 0.2014 43 1 4.1514 -4.6605 -4.8016 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039530348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:47 Heat of formation + Delta-G solvation = 70.576937 kcal Electronic energy + Delta-G solvation = -27055.171809 eV Core-core repulsion = 23523.716994 eV Total energy + Delta-G solvation = -3531.454815 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.59410 -41.90972 -39.36837 -36.04644 -34.94474 -34.02404 -33.45895 -32.70693 -32.19680 -29.18093 -27.84773 -27.41978 -25.54806 -23.95811 -23.33033 -22.89432 -22.08947 -21.24464 -20.46137 -19.43272 -18.25666 -17.58462 -17.17830 -16.80272 -16.26826 -16.11894 -15.89457 -15.54370 -15.12608 -15.06293 -14.89640 -14.58959 -14.30267 -14.26867 -14.06370 -13.77623 -13.47137 -13.31386 -13.21930 -12.75566 -12.64799 -12.49502 -12.04791 -11.97003 -11.94989 -11.75126 -11.55876 -11.39367 -11.24469 -11.13238 -10.96171 -10.43277 -9.79526 -9.51453 -8.74155 -8.21349 -5.39256 0.20708 1.61142 1.61497 1.64229 1.66395 1.84911 1.92011 2.20195 2.65088 3.15023 3.22637 3.34070 3.51648 3.84086 3.91333 3.95746 3.98108 4.00886 4.07497 4.19952 4.29951 4.40487 4.48197 4.55892 4.58573 4.65650 4.71105 4.75973 4.78044 4.85146 4.87251 5.03213 5.10810 5.12194 5.16249 5.22591 5.37058 5.42317 5.48554 5.91169 6.15192 6.20924 6.44727 6.80920 6.88916 7.04323 7.74329 8.26435 9.01524 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017555 B = 0.005547 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.637286 B = 5046.659331 C = 5875.643637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.245 3.755 3 N -0.522 5.522 4 C 0.059 3.941 5 C -0.100 4.100 6 C 0.597 3.403 7 O -0.563 6.563 8 N -0.587 5.587 9 C 0.084 3.916 10 C 0.165 3.835 11 H 0.071 0.929 12 C -0.116 4.116 13 C -0.133 4.133 14 C -0.120 4.120 15 C 0.147 3.853 16 H 0.076 0.924 17 C 0.112 3.888 18 N -0.596 5.596 19 C -0.357 4.357 20 H 0.047 0.953 21 C -0.060 4.060 22 N -0.934 5.934 23 Si 1.109 2.891 24 H -0.279 1.279 25 H -0.301 1.301 26 H -0.279 1.279 27 N -0.546 5.546 28 H 0.436 0.564 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.184 0.816 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.041 0.959 39 H 0.065 0.935 40 H 0.032 0.968 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.463 7.446 9.809 13.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.019 4.019 3 N -0.243 5.243 4 C -0.094 4.094 5 C -0.216 4.216 6 C 0.388 3.612 7 O -0.443 6.443 8 N -0.319 5.319 9 C -0.041 4.041 10 C 0.058 3.942 11 H 0.089 0.911 12 C -0.156 4.156 13 C -0.170 4.170 14 C -0.159 4.159 15 C 0.040 3.960 16 H 0.094 0.906 17 C -0.012 4.012 18 N -0.319 5.319 19 C -0.487 4.487 20 H 0.065 0.935 21 C -0.259 4.259 22 N -0.575 5.575 23 Si 0.935 3.065 24 H -0.206 1.206 25 H -0.228 1.228 26 H -0.204 1.204 27 N -0.159 5.159 28 H 0.283 0.717 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.201 0.799 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.111 0.889 42 H 0.090 0.910 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.224 7.389 9.261 13.876 hybrid contribution 1.787 -0.383 0.089 1.830 sum -5.437 7.006 9.350 12.887 Atomic orbital electron populations 1.20574 0.80971 1.06196 1.05571 1.24374 0.97543 0.80983 0.98976 1.70206 1.01952 1.29494 1.22607 1.22765 0.95423 0.91207 1.00034 1.20847 0.84283 0.95713 1.20746 1.16881 0.86771 0.80648 0.76899 1.90805 1.31277 1.72694 1.49526 1.48029 1.12877 1.12555 1.58435 1.22854 0.85576 0.99262 0.96406 1.21035 0.91285 0.89790 0.92102 0.91108 1.21963 0.97418 0.97299 0.98901 1.22117 0.95058 0.97039 1.02828 1.21886 0.97823 0.96972 0.99207 1.21289 0.89498 0.93602 0.91570 0.90631 1.22031 0.87683 0.93449 0.97994 1.44572 1.04590 1.07683 1.75033 1.20059 1.28347 0.84059 1.16217 0.93494 1.26971 1.00804 1.07562 0.90547 1.70880 1.46396 1.10969 1.29274 0.82919 0.76302 0.72019 0.75259 1.20573 1.22782 1.20430 1.44080 1.05164 1.11148 1.55466 0.71653 0.88104 0.87824 0.87829 0.79857 0.88232 0.89938 0.94604 0.92469 0.89263 0.94008 0.91674 0.94887 0.88942 0.90966 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.51 71.23 0.75 -0.07 16 2 C 0.25 5.11 8.12 138.19 1.12 6.23 16 3 N -0.52 -13.95 11.20 -187.40 -2.10 -16.05 16 4 C 0.06 1.69 11.74 84.10 0.99 2.68 16 5 C -0.10 -2.85 6.44 40.01 0.26 -2.59 16 6 C 0.60 19.57 4.95 86.47 0.43 20.00 16 7 O -0.56 -21.31 16.38 -4.28 -0.07 -21.38 16 8 N -0.59 -18.93 1.65 -822.76 -1.36 -20.28 16 9 C 0.08 2.59 5.06 86.49 0.44 3.02 16 10 C 0.17 6.67 2.56 45.11 0.12 6.78 16 11 H 0.07 3.27 6.56 -2.39 -0.02 3.26 16 12 C -0.12 -4.61 5.43 30.87 0.17 -4.44 16 13 C -0.13 -4.93 5.57 30.75 0.17 -4.76 16 14 C -0.12 -4.60 5.58 30.72 0.17 -4.43 16 15 C 0.15 5.79 3.60 44.95 0.16 5.95 16 16 H 0.08 3.02 8.01 -2.39 -0.02 3.00 16 17 C 0.11 3.80 5.86 86.33 0.51 4.31 16 18 N -0.60 -26.78 2.32 -646.54 -1.50 -28.28 16 19 C -0.36 -18.36 9.53 84.03 0.80 -17.56 16 20 H 0.05 2.47 7.98 -2.91 -0.02 2.45 16 21 C -0.06 -3.14 4.62 84.86 0.39 -2.75 16 22 N -0.93 -52.85 12.55 21.65 0.27 -52.58 16 23 Si 1.11 47.54 30.01 68.60 2.06 49.60 16 24 H -0.28 -11.26 7.11 99.48 0.71 -10.56 16 25 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 26 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 27 N -0.55 -11.94 4.88 -176.11 -0.86 -12.80 16 28 H 0.44 7.69 6.26 -92.71 -0.58 7.11 16 29 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.18 4.87 8.06 -2.91 -0.02 4.84 16 33 H 0.10 2.56 3.66 -2.39 -0.01 2.55 16 34 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.04 1.65 6.17 -2.39 -0.01 1.64 16 36 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.09 3.20 2.51 -3.42 -0.01 3.19 16 38 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 39 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.09 3.08 6.97 -2.39 -0.02 3.06 16 42 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.26 15.08 5.40 -92.71 -0.50 14.58 16 Total: -1.00 -66.77 324.74 3.65 -63.12 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.74 Total: 26.29 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 6.47 Total: 12.36 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -5.54 Total: -129.99 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.07 Total: -21.38 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.06 Total: 49.60 kcal Total: -66.77 3.65 -63.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039530348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.695 kcal (2) G-P(sol) polarization free energy of solvation -66.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds