Wall clock time and date at job start Fri Apr 10 2020 17:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30449 * 125.99437 * 2 1 4 4 N 1.39931 * 108.89816 * 180.14977 * 3 2 1 5 5 H 0.96995 * 125.75361 * 179.84961 * 4 3 2 6 6 C 1.34259 * 108.49283 * 359.58347 * 4 3 2 7 7 C 1.38044 * 107.41869 * 0.24019 * 6 4 3 8 8 C 1.47421 * 126.41757 * 179.97438 * 7 6 4 9 9 O 1.21607 * 120.00317 * 130.53423 * 8 7 6 10 10 N 1.34778 * 120.00128 * 310.53912 * 8 7 6 11 11 C 1.46950 * 120.44255 * 184.15500 * 10 8 7 12 12 C 1.53595 * 108.52903 * 125.75208 * 11 10 8 13 13 H 1.09004 * 110.59666 * 172.16055 * 12 11 10 14 14 C 1.53366 * 108.68921 * 294.35816 * 12 11 10 15 15 C 1.53013 * 109.26752 * 60.29477 * 14 12 11 16 16 C 1.53004 * 109.79599 * 60.56951 * 15 14 12 17 17 C 1.53367 * 109.25957 * 299.41774 * 16 15 14 18 18 H 1.08995 * 111.08580 * 177.82676 * 17 16 15 19 19 C 1.46948 * 120.44254 * 3.87923 * 10 8 7 20 20 N 1.47572 * 107.76783 * 51.14549 * 12 11 10 21 21 C 1.36931 * 121.61095 * 120.45841 * 20 12 11 22 22 H 1.08001 * 120.00638 * 331.24099 * 21 20 12 23 23 C 1.38822 * 119.99829 * 151.24179 * 21 20 12 24 24 N 1.31616 * 120.00159 * 341.14892 * 23 21 20 25 25 Si 1.86797 * 119.99786 * 161.14383 * 23 21 20 26 26 H 1.48501 * 109.47501 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47273 * 120.00095 * 25 23 21 28 28 H 1.48508 * 109.47246 * 240.00090 * 25 23 21 29 29 H 1.08998 * 109.47183 * 270.30530 * 1 2 3 30 30 H 1.09000 * 109.47226 * 30.30231 * 1 2 3 31 31 H 1.08995 * 109.47612 * 150.30080 * 1 2 3 32 32 H 1.08003 * 126.28975 * 180.26828 * 6 4 3 33 33 H 1.09002 * 109.62495 * 245.46353 * 11 10 8 34 34 H 1.08990 * 109.62810 * 6.03801 * 11 10 8 35 35 H 1.08998 * 109.50386 * 180.23174 * 14 12 11 36 36 H 1.09004 * 109.50542 * 300.35715 * 14 12 11 37 37 H 1.09003 * 109.41258 * 300.46981 * 15 14 12 38 38 H 1.08998 * 109.41500 * 180.67642 * 15 14 12 39 39 H 1.08998 * 109.50716 * 179.48397 * 16 15 14 40 40 H 1.09005 * 109.54440 * 59.37760 * 16 15 14 41 41 H 1.08995 * 109.62208 * 353.95991 * 19 10 8 42 42 H 1.09002 * 109.62450 * 114.51748 * 19 10 8 43 43 H 0.96996 * 120.00451 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6111 0.6441 -0.0035 5 1 4.3842 1.2298 -0.0063 6 6 3.6438 -0.6981 0.0037 7 6 2.3372 -1.1433 0.0061 8 6 1.8914 -2.5485 0.0131 9 8 1.0553 -2.9173 0.8154 10 7 2.4105 -3.4246 -0.8698 11 6 1.9086 -4.8043 -0.9325 12 6 1.4878 -5.1054 -2.3786 13 1 1.2399 -6.1606 -2.4941 14 6 0.2917 -4.2151 -2.7379 15 6 0.7008 -2.7459 -2.6145 16 6 1.8507 -2.4455 -3.5780 17 6 3.0530 -3.3286 -3.2218 18 1 3.8781 -3.1659 -3.9151 19 6 3.4819 -3.0112 -1.7867 20 7 2.6117 -4.7363 -3.2608 21 6 3.2162 -5.6557 -4.0759 22 1 3.2350 -6.6980 -3.7936 23 6 3.8051 -5.2480 -5.2651 24 7 3.4797 -4.0890 -5.7972 25 14 5.0596 -6.3442 -6.1099 26 1 5.2487 -7.5842 -5.3149 27 1 4.5737 -6.6970 -7.4681 28 1 6.3534 -5.6234 -6.2188 29 1 -0.3633 0.0055 1.0276 30 1 -0.3634 0.8873 -0.5185 31 1 -0.3634 -0.8926 -0.5091 32 1 4.5297 -1.3159 0.0073 33 1 2.6959 -5.4944 -0.6290 34 1 1.0489 -4.9116 -0.2711 35 1 -0.0208 -4.4212 -3.7615 36 1 -0.5334 -4.4217 -2.0562 37 1 1.0220 -2.5438 -1.5927 38 1 -0.1511 -2.1109 -2.8577 39 1 2.1322 -1.3960 -3.4929 40 1 1.5347 -2.6558 -4.5999 41 1 3.6561 -1.9399 -1.6867 42 1 4.3957 -3.5569 -1.5517 43 1 3.8908 -3.8043 -6.6282 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039811013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:58 Heat of formation + Delta-G solvation = 92.235928 kcal Electronic energy + Delta-G solvation = -27187.261284 eV Core-core repulsion = 23656.745673 eV Total energy + Delta-G solvation = -3530.515611 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.56247 -40.05544 -37.48764 -33.93760 -33.02415 -32.79638 -31.96885 -30.39353 -30.08986 -27.96687 -26.80546 -25.50721 -23.94346 -22.47877 -21.42590 -21.31222 -20.19969 -19.30396 -18.41164 -17.83023 -16.69969 -15.93070 -15.39058 -15.16283 -14.71331 -14.46408 -14.22900 -13.92780 -13.52869 -13.19982 -13.15813 -12.88902 -12.77208 -12.62907 -12.42904 -12.08950 -11.97318 -11.76244 -11.36680 -11.21425 -10.91220 -10.84760 -10.71900 -10.29048 -10.11268 -10.07780 -9.96959 -9.64596 -9.47428 -9.37415 -9.28236 -8.62956 -8.52191 -7.82068 -6.61318 -5.85802 -3.28518 1.65711 2.34409 2.70647 3.23958 3.31810 3.41214 3.42597 3.64903 4.42629 4.57098 4.71017 5.14742 5.18167 5.24893 5.30686 5.59468 5.72895 5.74831 5.77942 5.82075 5.85203 5.90518 5.95769 5.98629 6.04384 6.19594 6.29458 6.42838 6.47194 6.49801 6.55286 6.68422 6.75454 6.92104 7.05361 7.09692 7.11557 7.16234 7.45051 7.55432 7.58763 7.73677 7.95930 8.34658 8.61795 9.10962 9.73197 10.36379 11.20999 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.020818 B = 0.005345 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.691604 B = 5237.659249 C = 5658.238277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.128 3.872 3 N -0.301 5.301 4 N -0.465 5.465 5 H 0.442 0.558 6 C 0.098 3.902 7 C -0.272 4.272 8 C 0.593 3.407 9 O -0.553 6.553 10 N -0.585 5.585 11 C 0.103 3.897 12 C 0.151 3.849 13 H 0.078 0.922 14 C -0.121 4.121 15 C -0.138 4.138 16 C -0.111 4.111 17 C 0.179 3.821 18 H 0.111 0.889 19 C 0.081 3.919 20 N -0.578 5.578 21 C -0.249 4.249 22 H 0.067 0.933 23 C 0.005 3.995 24 N -0.895 5.895 25 Si 0.899 3.101 26 H -0.278 1.278 27 H -0.291 1.291 28 H -0.290 1.290 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.185 0.815 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.042 0.958 37 H 0.082 0.918 38 H 0.029 0.971 39 H 0.031 0.969 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.270 7.082 9.559 11.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.040 4.040 3 N -0.125 5.125 4 N -0.170 5.170 5 H 0.286 0.714 6 C -0.054 4.054 7 C -0.286 4.286 8 C 0.382 3.618 9 O -0.432 6.432 10 N -0.317 5.317 11 C -0.021 4.021 12 C 0.043 3.957 13 H 0.096 0.904 14 C -0.161 4.161 15 C -0.176 4.176 16 C -0.150 4.150 17 C 0.072 3.928 18 H 0.129 0.871 19 C -0.044 4.044 20 N -0.300 5.300 21 C -0.379 4.379 22 H 0.085 0.915 23 C -0.194 4.194 24 N -0.539 5.539 25 Si 0.729 3.271 26 H -0.203 1.203 27 H -0.218 1.218 28 H -0.217 1.217 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.202 0.798 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.059 8.159 9.796 12.749 hybrid contribution 1.275 -1.051 -0.799 1.836 sum 1.216 7.108 8.997 11.530 Atomic orbital electron populations 1.20247 0.86097 1.03580 1.03441 1.22324 0.97058 0.88729 0.95861 1.77075 0.86339 1.22376 1.26665 1.46003 1.07622 1.05347 1.58020 0.71392 1.23093 0.98938 0.85401 0.97930 1.20268 0.92409 0.94788 1.21183 1.17069 0.81096 0.83758 0.79879 1.90736 1.34307 1.78984 1.39217 1.48033 1.37314 1.11511 1.34796 1.22238 0.99179 0.81111 0.99564 1.21252 0.88412 0.97230 0.88767 0.90423 1.21911 0.97370 0.96235 1.00554 1.22125 0.97619 0.95803 1.02095 1.21773 0.96346 0.96741 1.00125 1.20973 0.96875 0.84084 0.90866 0.87150 1.22719 0.89219 0.99160 0.93267 1.44410 1.33506 1.05983 1.46056 1.19174 1.29911 0.90375 0.98420 0.91515 1.25027 1.01243 0.97455 0.95676 1.70014 1.42871 1.21811 1.19163 0.86277 0.81438 0.80140 0.79214 1.20287 1.21836 1.21658 0.89978 0.90768 0.89957 0.79762 0.92014 0.89958 0.92445 0.93975 0.90052 0.95189 0.95004 0.90869 0.90797 0.91995 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.24 36.00 0.37 -0.61 16 2 C 0.13 1.91 7.26 -82.02 -0.60 1.31 16 3 N -0.30 -4.22 12.63 33.90 0.43 -3.80 16 4 N -0.46 -5.05 7.29 30.85 0.22 -4.83 16 5 H 0.44 3.07 8.96 -182.73 -1.64 1.43 16 6 C 0.10 1.16 9.63 -16.56 -0.16 1.00 16 7 C -0.27 -4.14 4.99 -105.07 -0.52 -4.66 16 8 C 0.59 10.37 4.69 -12.52 -0.06 10.31 16 9 O -0.55 -11.02 16.47 5.27 0.09 -10.94 16 10 N -0.58 -10.20 1.66 -173.81 -0.29 -10.49 16 11 C 0.10 1.85 5.88 -3.49 -0.02 1.83 16 12 C 0.15 3.02 3.62 -66.85 -0.24 2.77 16 13 H 0.08 1.53 8.01 -51.93 -0.42 1.11 16 14 C -0.12 -2.37 5.58 -26.53 -0.15 -2.52 16 15 C -0.14 -2.66 5.55 -26.72 -0.15 -2.81 16 16 C -0.11 -2.30 5.54 -26.54 -0.15 -2.45 16 17 C 0.18 3.80 2.66 -67.09 -0.18 3.62 16 18 H 0.11 2.66 5.99 -51.93 -0.31 2.35 16 19 C 0.08 1.39 5.28 -3.74 -0.02 1.37 16 20 N -0.58 -13.16 2.53 -155.70 -0.39 -13.55 16 21 C -0.25 -6.32 9.70 -15.06 -0.15 -6.46 16 22 H 0.07 1.69 7.90 -52.49 -0.41 1.27 16 23 C 0.01 0.13 4.95 -17.43 -0.09 0.04 16 24 N -0.89 -23.95 11.03 55.49 0.61 -23.33 16 25 Si 0.90 20.50 29.59 -169.99 -5.03 15.47 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.17 8.00 -51.93 -0.42 0.75 16 32 H 0.19 1.62 7.57 -52.48 -0.40 1.23 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.46 7.01 -51.93 -0.36 1.10 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.52 2.39 -52.45 -0.13 1.39 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 1.77 7.92 -51.93 -0.41 1.36 16 41 H 0.07 1.13 4.50 -51.93 -0.23 0.89 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 329.79 15.07 4.97 4.97 Total: -1.00 -30.63 329.79 -8.74 -39.37 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.24 Total: 4.39 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -2.11 Total: 2.74 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.58 Total: -56.01 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.63 -8.74 -39.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039811013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.604 kcal (2) G-P(sol) polarization free energy of solvation -30.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds