Wall clock time and date at job start Fri Apr 10 2020 17:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30449 * 125.99437 * 2 1 4 4 N 1.39931 * 108.89816 * 180.14977 * 3 2 1 5 5 H 0.96995 * 125.75361 * 179.84961 * 4 3 2 6 6 C 1.34259 * 108.49283 * 359.58347 * 4 3 2 7 7 C 1.38044 * 107.41869 * 0.24019 * 6 4 3 8 8 C 1.47421 * 126.41757 * 179.97438 * 7 6 4 9 9 O 1.21607 * 120.00317 * 130.53423 * 8 7 6 10 10 N 1.34778 * 120.00128 * 310.53912 * 8 7 6 11 11 C 1.46950 * 120.44255 * 184.15500 * 10 8 7 12 12 C 1.53595 * 108.52903 * 125.75208 * 11 10 8 13 13 H 1.09004 * 110.59666 * 172.16055 * 12 11 10 14 14 C 1.53366 * 108.68921 * 294.35816 * 12 11 10 15 15 C 1.53013 * 109.26752 * 60.29477 * 14 12 11 16 16 C 1.53004 * 109.79599 * 60.56951 * 15 14 12 17 17 C 1.53367 * 109.25957 * 299.41774 * 16 15 14 18 18 H 1.08995 * 111.08580 * 177.82676 * 17 16 15 19 19 C 1.46948 * 120.44254 * 3.87923 * 10 8 7 20 20 N 1.47572 * 107.76783 * 51.14549 * 12 11 10 21 21 C 1.36931 * 121.61095 * 120.45841 * 20 12 11 22 22 H 1.08001 * 120.00638 * 331.24099 * 21 20 12 23 23 C 1.38822 * 119.99829 * 151.24179 * 21 20 12 24 24 N 1.31616 * 120.00159 * 341.14892 * 23 21 20 25 25 Si 1.86797 * 119.99786 * 161.14383 * 23 21 20 26 26 H 1.48501 * 109.47501 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47273 * 120.00095 * 25 23 21 28 28 H 1.48508 * 109.47246 * 240.00090 * 25 23 21 29 29 H 1.08998 * 109.47183 * 270.30530 * 1 2 3 30 30 H 1.09000 * 109.47226 * 30.30231 * 1 2 3 31 31 H 1.08995 * 109.47612 * 150.30080 * 1 2 3 32 32 H 1.08003 * 126.28975 * 180.26828 * 6 4 3 33 33 H 1.09002 * 109.62495 * 245.46353 * 11 10 8 34 34 H 1.08990 * 109.62810 * 6.03801 * 11 10 8 35 35 H 1.08998 * 109.50386 * 180.23174 * 14 12 11 36 36 H 1.09004 * 109.50542 * 300.35715 * 14 12 11 37 37 H 1.09003 * 109.41258 * 300.46981 * 15 14 12 38 38 H 1.08998 * 109.41500 * 180.67642 * 15 14 12 39 39 H 1.08998 * 109.50716 * 179.48397 * 16 15 14 40 40 H 1.09005 * 109.54440 * 59.37760 * 16 15 14 41 41 H 1.08995 * 109.62208 * 353.95991 * 19 10 8 42 42 H 1.09002 * 109.62450 * 114.51748 * 19 10 8 43 43 H 0.96996 * 120.00451 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6111 0.6441 -0.0035 5 1 4.3842 1.2298 -0.0063 6 6 3.6438 -0.6981 0.0037 7 6 2.3372 -1.1433 0.0061 8 6 1.8914 -2.5485 0.0131 9 8 1.0553 -2.9173 0.8154 10 7 2.4105 -3.4246 -0.8698 11 6 1.9086 -4.8043 -0.9325 12 6 1.4878 -5.1054 -2.3786 13 1 1.2399 -6.1606 -2.4941 14 6 0.2917 -4.2151 -2.7379 15 6 0.7008 -2.7459 -2.6145 16 6 1.8507 -2.4455 -3.5780 17 6 3.0530 -3.3286 -3.2218 18 1 3.8781 -3.1659 -3.9151 19 6 3.4819 -3.0112 -1.7867 20 7 2.6117 -4.7363 -3.2608 21 6 3.2162 -5.6557 -4.0759 22 1 3.2350 -6.6980 -3.7936 23 6 3.8051 -5.2480 -5.2651 24 7 3.4797 -4.0890 -5.7972 25 14 5.0596 -6.3442 -6.1099 26 1 5.2487 -7.5842 -5.3149 27 1 4.5737 -6.6970 -7.4681 28 1 6.3534 -5.6234 -6.2188 29 1 -0.3633 0.0055 1.0276 30 1 -0.3634 0.8873 -0.5185 31 1 -0.3634 -0.8926 -0.5091 32 1 4.5297 -1.3159 0.0073 33 1 2.6959 -5.4944 -0.6290 34 1 1.0489 -4.9116 -0.2711 35 1 -0.0208 -4.4212 -3.7615 36 1 -0.5334 -4.4217 -2.0562 37 1 1.0220 -2.5438 -1.5927 38 1 -0.1511 -2.1109 -2.8577 39 1 2.1322 -1.3960 -3.4929 40 1 1.5347 -2.6558 -4.5999 41 1 3.6561 -1.9399 -1.6867 42 1 4.3957 -3.5569 -1.5517 43 1 3.8908 -3.8043 -6.6282 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039811013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:57 Heat of formation + Delta-G solvation = 73.695781 kcal Electronic energy + Delta-G solvation = -27188.065245 eV Core-core repulsion = 23656.745673 eV Total energy + Delta-G solvation = -3531.319572 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.70433 -41.41681 -38.98965 -35.54286 -34.53837 -33.99681 -33.52589 -32.13784 -31.29961 -28.99203 -28.39365 -27.02954 -25.60959 -23.83762 -22.96544 -22.82462 -21.39558 -20.45634 -19.99760 -19.20011 -18.04811 -17.49190 -16.81237 -16.50041 -16.35329 -15.72844 -15.70685 -15.25078 -15.17772 -14.62604 -14.61194 -14.45297 -14.07395 -13.86693 -13.73604 -13.47280 -13.33690 -13.11801 -13.04047 -13.00794 -12.58421 -12.39849 -12.06793 -12.00425 -11.79585 -11.67954 -11.61310 -11.19743 -11.04163 -10.83309 -10.44749 -10.41575 -9.70277 -9.37018 -8.40681 -7.78764 -5.23812 0.67028 1.19935 1.49215 1.54150 1.62136 1.78961 1.99470 2.32079 2.56891 3.33441 3.49570 3.56055 3.79415 4.01035 4.19105 4.21547 4.24989 4.29708 4.35388 4.41511 4.53702 4.57719 4.74070 4.75072 4.80524 4.86330 4.87917 4.90624 4.93899 4.98329 5.09376 5.15547 5.29800 5.38792 5.44414 5.50409 5.59825 5.73131 5.79009 5.88787 6.30610 6.44924 6.52864 6.61938 7.20554 7.26126 7.87714 8.47913 9.24452 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.020818 B = 0.005345 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.691604 B = 5237.659249 C = 5658.238277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.115 3.885 3 N -0.318 5.318 4 N -0.446 5.446 5 H 0.460 0.540 6 C 0.121 3.879 7 C -0.310 4.310 8 C 0.598 3.402 9 O -0.580 6.580 10 N -0.586 5.586 11 C 0.112 3.888 12 C 0.147 3.853 13 H 0.076 0.924 14 C -0.118 4.118 15 C -0.134 4.134 16 C -0.100 4.100 17 C 0.177 3.823 18 H 0.081 0.919 19 C 0.094 3.906 20 N -0.592 5.592 21 C -0.254 4.254 22 H 0.064 0.936 23 C -0.040 4.040 24 N -0.920 5.920 25 Si 0.958 3.042 26 H -0.271 1.271 27 H -0.301 1.301 28 H -0.290 1.290 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.220 0.780 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.030 0.970 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.034 0.966 39 H 0.041 0.959 40 H 0.031 0.969 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.469 7.749 11.112 13.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.052 4.052 3 N -0.142 5.142 4 N -0.152 5.152 5 H 0.309 0.691 6 C -0.033 4.033 7 C -0.325 4.325 8 C 0.389 3.611 9 O -0.461 6.461 10 N -0.317 5.317 11 C -0.012 4.012 12 C 0.039 3.961 13 H 0.094 0.906 14 C -0.157 4.157 15 C -0.172 4.172 16 C -0.139 4.139 17 C 0.070 3.930 18 H 0.099 0.901 19 C -0.030 4.030 20 N -0.314 5.314 21 C -0.385 4.385 22 H 0.082 0.918 23 C -0.236 4.236 24 N -0.565 5.565 25 Si 0.787 3.213 26 H -0.195 1.195 27 H -0.229 1.229 28 H -0.217 1.217 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.237 0.763 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.117 0.883 42 H 0.091 0.909 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.151 8.855 11.372 14.459 hybrid contribution 0.884 -1.233 -1.271 1.979 sum 2.034 7.622 10.101 12.816 Atomic orbital electron populations 1.20262 0.85690 1.03497 1.03919 1.22546 0.97767 0.88860 0.96046 1.77038 0.87528 1.22402 1.27200 1.46046 1.07446 1.05536 1.56197 0.69127 1.23531 0.98818 0.85793 0.95138 1.20214 0.94084 0.93536 1.24642 1.17319 0.80287 0.84419 0.79070 1.90719 1.35506 1.79619 1.40230 1.48027 1.37418 1.11349 1.34895 1.22064 0.99644 0.81817 0.97724 1.21376 0.87785 0.97288 0.89613 0.90559 1.21859 0.97928 0.96526 0.99394 1.22114 0.97190 0.95567 1.02306 1.21614 0.96951 0.97271 0.98067 1.20898 0.95880 0.83395 0.92815 0.90128 1.22533 0.89229 1.00830 0.90368 1.44590 1.34455 1.06261 1.46048 1.19403 1.29585 0.90835 0.98630 0.91800 1.25614 1.02926 0.98653 0.96430 1.70160 1.43828 1.23198 1.19314 0.85365 0.79323 0.78925 0.77666 1.19528 1.22882 1.21681 0.89264 0.89396 0.91396 0.76333 0.91276 0.89516 0.95065 0.92108 0.88716 0.94738 0.93995 0.95021 0.88325 0.90943 0.94348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.87 10.24 71.23 0.73 -1.14 16 2 C 0.11 3.19 7.26 43.52 0.32 3.50 16 3 N -0.32 -8.09 12.63 -46.67 -0.59 -8.68 16 4 N -0.45 -8.08 7.29 -56.31 -0.41 -8.49 16 5 H 0.46 4.57 8.96 -213.44 -1.91 2.66 16 6 C 0.12 2.38 9.63 84.28 0.81 3.20 16 7 C -0.31 -8.62 4.99 -20.15 -0.10 -8.72 16 8 C 0.60 19.64 4.69 86.66 0.41 20.04 16 9 O -0.58 -22.16 16.47 -4.05 -0.07 -22.22 16 10 N -0.59 -19.20 1.66 -822.05 -1.36 -20.57 16 11 C 0.11 3.83 5.88 86.49 0.51 4.34 16 12 C 0.15 5.78 3.62 45.11 0.16 5.94 16 13 H 0.08 2.99 8.01 -2.38 -0.02 2.97 16 14 C -0.12 -4.59 5.58 30.72 0.17 -4.42 16 15 C -0.13 -5.07 5.55 30.60 0.17 -4.90 16 16 C -0.10 -4.17 5.54 30.72 0.17 -4.00 16 17 C 0.18 7.43 2.66 44.95 0.12 7.55 16 18 H 0.08 3.92 5.99 -2.39 -0.01 3.91 16 19 C 0.09 3.04 5.28 86.33 0.46 3.50 16 20 N -0.59 -26.90 2.53 -646.53 -1.63 -28.53 16 21 C -0.25 -12.93 9.70 84.04 0.81 -12.12 16 22 H 0.06 3.22 7.90 -2.91 -0.02 3.20 16 23 C -0.04 -2.06 4.95 84.86 0.42 -1.64 16 24 N -0.92 -50.32 11.03 21.65 0.24 -50.08 16 25 Si 0.96 42.50 29.59 68.60 2.03 44.53 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 27 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 28 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 29 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 1.87 8.00 -2.39 -0.02 1.85 16 32 H 0.22 2.72 7.57 -2.91 -0.02 2.70 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 34 H 0.09 2.93 7.01 -2.39 -0.02 2.92 16 35 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 37 H 0.10 3.40 2.39 -3.41 -0.01 3.39 16 38 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.03 1.56 7.92 -2.38 -0.02 1.54 16 41 H 0.10 2.68 4.50 -2.39 -0.01 2.67 16 42 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.25 13.28 8.31 -92.71 -0.77 12.51 16 Total: -1.00 -66.43 329.79 2.49 -63.94 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -0.87 Total: 18.98 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 5.16 Total: 11.13 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -3.76 Total: -116.35 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.07 Total: -22.22 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -66.43 2.49 -63.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039811013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.639 kcal (2) G-P(sol) polarization free energy of solvation -66.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds