Wall clock time and date at job start Fri Apr 10 2020 17:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00215 * 2 1 4 4 H 1.48502 * 109.47298 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47370 * 299.99739 * 3 2 1 6 6 H 1.48504 * 109.46982 * 60.00164 * 3 2 1 7 7 C 1.38813 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00207 * 197.24930 * 7 2 1 9 9 N 1.36944 * 119.99919 * 17.24399 * 7 2 1 10 10 C 1.46932 * 120.68228 * 207.36251 * 9 7 2 11 11 C 1.53122 * 108.88259 * 234.04724 * 10 9 7 12 12 C 1.53130 * 109.32155 * 304.91973 * 11 10 9 13 13 C 1.52498 * 109.58310 * 60.51693 * 12 11 10 14 14 C 1.54154 * 110.05601 * 178.27447 * 13 12 11 15 15 C 1.55048 * 102.73241 * 219.39353 * 14 13 12 16 16 N 1.48159 * 103.31519 * 36.99031 * 15 14 13 17 17 C 1.34777 * 127.02687 * 141.01662 * 16 15 14 18 18 O 1.21568 * 120.00299 * 179.97438 * 17 16 15 19 19 C 1.47714 * 119.99571 * 359.95623 * 17 16 15 20 20 C 1.41506 * 126.51306 * 179.97438 * 19 17 16 21 21 C 1.35367 * 105.49922 * 179.97438 * 20 19 17 22 22 N 1.35033 * 107.22913 * 359.97438 * 21 20 19 23 23 H 0.97002 * 124.87980 * 179.97438 * 22 21 20 24 24 N 1.28460 * 110.23274 * 359.74950 * 22 21 20 25 25 C 1.47613 * 105.94718 * 320.97832 * 16 15 14 26 26 C 1.47032 * 120.67955 * 27.38936 * 9 7 2 27 27 H 0.97002 * 119.99669 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.56826 * 353.86783 * 10 9 7 29 29 H 1.08997 * 109.56945 * 114.21843 * 10 9 7 30 30 H 1.08995 * 109.46770 * 184.97977 * 11 10 9 31 31 H 1.09008 * 109.50955 * 64.88334 * 11 10 9 32 32 H 1.09007 * 109.44443 * 300.48970 * 12 11 10 33 33 H 1.08997 * 109.45127 * 180.55067 * 12 11 10 34 34 H 1.09004 * 110.76140 * 337.70177 * 14 13 12 35 35 H 1.08998 * 110.76087 * 101.07838 * 14 13 12 36 36 H 1.09002 * 110.64668 * 278.53551 * 15 14 13 37 37 H 1.08996 * 110.79293 * 155.51468 * 15 14 13 38 38 H 1.08000 * 127.25009 * 0.02562 * 20 19 17 39 39 H 1.08007 * 126.38309 * 180.02562 * 21 20 19 40 40 H 1.09001 * 109.97358 * 265.99951 * 25 16 15 41 41 H 1.08997 * 109.96925 * 144.72753 * 25 16 15 42 42 H 1.08996 * 109.58481 * 7.38597 * 26 9 7 43 43 H 1.09000 * 109.58450 * 246.97160 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0538 -1.2234 0.2768 9 7 1.3716 -2.3613 -0.3526 10 6 1.8229 -3.6561 0.1753 11 6 2.0826 -4.6060 -0.9972 12 6 0.8238 -4.6963 -1.8645 13 6 0.4786 -3.3146 -2.4098 14 6 -0.7626 -3.4004 -3.3199 15 6 -0.4090 -2.4260 -4.4729 16 7 1.0456 -2.6346 -4.6618 17 6 1.7156 -2.6685 -5.8308 18 8 2.9177 -2.8490 -5.8375 19 6 0.9889 -2.4866 -7.1040 20 6 1.5505 -2.4963 -8.4028 21 6 0.5123 -2.2929 -9.2473 22 7 -0.6000 -2.1705 -8.4915 23 1 -1.4926 -2.0171 -8.8390 24 7 -0.3068 -2.2912 -7.2467 25 6 1.6113 -2.7969 -3.3081 26 6 0.2206 -2.3357 -1.2672 27 1 -0.4850 0.8401 -0.0004 28 1 2.7426 -3.5180 0.7439 29 1 1.0518 -4.0757 0.8214 30 1 2.3325 -5.5955 -0.6146 31 1 2.9107 -4.2271 -1.5962 32 1 -0.0060 -5.0666 -1.2623 33 1 1.0031 -5.3797 -2.6945 34 1 -0.8953 -4.4142 -3.6978 35 1 -1.6541 -3.0648 -2.7901 36 1 -0.6151 -1.3958 -4.1823 37 1 -0.9555 -2.6850 -5.3797 38 1 2.5887 -2.6371 -8.6650 39 1 0.5640 -2.2394 -10.3248 40 1 1.9713 -1.8371 -2.9375 41 1 2.4283 -3.5180 -3.3300 42 1 0.0954 -1.3302 -1.6688 43 1 -0.6801 -2.6313 -0.7293 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040088096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:17 Heat of formation + Delta-G solvation = 50.517475 kcal Electronic energy + Delta-G solvation = -25975.767799 eV Core-core repulsion = 22443.443141 eV Total energy + Delta-G solvation = -3532.324659 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.58259 -41.33120 -39.57945 -37.28523 -34.92201 -33.33912 -32.55390 -31.81746 -31.60702 -30.07616 -27.67178 -27.18856 -24.94331 -24.07215 -23.56582 -22.59809 -21.91342 -20.34080 -19.63065 -19.22201 -18.63220 -17.97661 -17.12236 -16.75310 -16.60316 -16.19581 -15.77695 -15.47858 -15.17424 -14.76189 -14.64365 -14.59981 -14.30296 -14.06840 -13.91103 -13.76080 -13.21705 -13.13002 -12.90570 -12.67640 -12.62082 -12.47913 -12.12483 -11.91532 -11.86913 -11.69127 -11.41228 -11.26489 -11.01884 -10.94639 -10.52485 -10.47174 -10.15134 -9.71419 -8.64864 -7.87232 -5.29360 0.49872 1.24822 1.40945 1.44590 1.53519 1.78295 2.25056 2.32726 2.49455 3.25266 3.33057 3.59357 3.73598 3.88257 3.89376 4.05213 4.18297 4.27887 4.33742 4.38489 4.53490 4.59650 4.66373 4.74866 4.78003 4.82746 4.93532 4.96484 4.99247 5.08525 5.14591 5.18350 5.20797 5.32074 5.34478 5.40755 5.52261 5.60291 5.66886 5.77553 6.20943 6.40368 6.50359 6.81911 7.09178 7.16934 7.88634 8.39455 9.18773 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.004732 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.587723 B = 5915.698155 C = 6665.010935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.042 4.042 3 Si 0.951 3.049 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.288 1.288 7 C -0.257 4.257 8 H 0.060 0.940 9 N -0.610 5.610 10 C 0.140 3.860 11 C -0.130 4.130 12 C -0.089 4.089 13 C -0.087 4.087 14 C -0.114 4.114 15 C 0.101 3.899 16 N -0.608 5.608 17 C 0.604 3.396 18 O -0.582 6.582 19 C -0.037 4.037 20 C -0.210 4.210 21 C 0.021 3.979 22 N -0.365 5.365 23 H 0.465 0.535 24 N -0.270 5.270 25 C 0.138 3.862 26 C 0.201 3.799 27 H 0.249 0.751 28 H 0.048 0.952 29 H 0.020 0.980 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.121 0.879 38 H 0.161 0.839 39 H 0.238 0.762 40 H 0.038 0.962 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.648 -8.284 -18.988 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.238 4.238 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.221 1.221 6 H -0.214 1.214 7 C -0.387 4.387 8 H 0.077 0.923 9 N -0.333 5.333 10 C 0.015 3.985 11 C -0.169 4.169 12 C -0.127 4.127 13 C -0.089 4.089 14 C -0.152 4.152 15 C -0.021 4.021 16 N -0.339 5.339 17 C 0.393 3.607 18 O -0.462 6.462 19 C -0.196 4.196 20 C -0.238 4.238 21 C -0.124 4.124 22 N -0.082 5.082 23 H 0.314 0.686 24 N -0.109 5.109 25 C 0.015 3.985 26 C 0.075 3.925 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.038 0.962 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.139 0.861 38 H 0.179 0.821 39 H 0.254 0.746 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -5.991 -8.141 -18.405 20.998 hybrid contribution 0.935 1.372 -0.006 1.660 sum -5.056 -6.769 -18.411 20.258 Atomic orbital electron populations 1.70146 1.06150 1.25513 1.55558 1.25565 0.95965 1.00685 1.01593 0.85442 0.78734 0.80973 0.76808 1.19714 1.22093 1.21437 1.19451 0.92708 0.86239 1.40307 0.92266 1.44326 1.35605 1.02031 1.51305 1.21045 0.97149 0.86012 0.94274 1.21980 0.97643 0.99606 0.97629 1.21358 0.98038 0.94280 0.98978 1.21672 0.94309 0.97413 0.95515 1.22713 0.97275 1.00228 0.95004 1.22893 0.79245 0.99156 1.00799 1.48854 1.10884 1.68918 1.05237 1.17084 0.85427 0.76316 0.81855 1.90733 1.15202 1.53049 1.87192 1.21677 0.91123 1.12139 0.94651 1.22038 1.02079 1.09650 0.90007 1.23570 0.84539 1.03499 1.00784 1.43589 1.12150 1.49896 1.02535 0.68581 1.73453 1.15708 1.19297 1.02409 1.21861 0.96682 0.99785 0.80162 1.20526 0.87599 0.96638 0.87705 0.94143 0.93339 0.96187 0.89802 0.93569 0.91072 0.91433 0.89100 0.89276 0.92616 0.86128 0.82122 0.74591 0.94341 0.91982 0.92740 0.97651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.68 11.18 21.65 0.24 -54.44 16 2 C -0.04 -2.41 4.92 84.86 0.42 -1.99 16 3 Si 0.95 46.53 29.59 68.60 2.03 48.56 16 4 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 6 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 7 C -0.26 -14.47 9.59 84.03 0.81 -13.66 16 8 H 0.06 3.34 7.89 -2.91 -0.02 3.31 16 9 N -0.61 -30.84 2.80 -699.98 -1.96 -32.80 16 10 C 0.14 5.90 6.50 86.34 0.56 6.46 16 11 C -0.13 -4.47 5.86 30.68 0.18 -4.29 16 12 C -0.09 -2.87 4.43 30.47 0.14 -2.74 16 13 C -0.09 -3.22 0.62 -51.88 -0.03 -3.26 16 14 C -0.11 -3.43 6.15 31.69 0.19 -3.23 16 15 C 0.10 3.21 6.71 86.76 0.58 3.79 16 16 N -0.61 -22.76 3.30 -813.15 -2.68 -25.45 16 17 C 0.60 23.14 7.90 86.75 0.69 23.83 16 18 O -0.58 -26.06 17.27 -3.93 -0.07 -26.12 16 19 C -0.04 -1.10 7.00 42.46 0.30 -0.80 16 20 C -0.21 -4.66 10.81 22.41 0.24 -4.42 16 21 C 0.02 0.25 12.02 83.54 1.00 1.25 16 22 N -0.36 -4.78 6.83 -57.51 -0.39 -5.17 16 23 H 0.47 1.90 8.96 -219.99 -1.97 -0.07 16 24 N -0.27 -6.37 9.23 -48.17 -0.44 -6.82 16 25 C 0.14 5.70 5.62 86.36 0.49 6.18 16 26 C 0.20 9.48 3.61 86.16 0.31 9.79 16 27 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 28 H 0.05 2.03 7.93 -2.38 -0.02 2.01 16 29 H 0.02 0.83 8.14 -2.39 -0.02 0.82 16 30 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.05 1.73 6.58 -2.38 -0.02 1.71 16 32 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.09 2.32 7.84 -2.38 -0.02 2.30 16 35 H 0.09 2.60 7.79 -2.39 -0.02 2.58 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.12 3.28 5.47 -2.39 -0.01 3.26 16 38 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 39 H 0.24 0.13 8.06 -2.91 -0.02 0.11 16 40 H 0.04 1.91 7.63 -2.39 -0.02 1.89 16 41 H 0.06 2.63 6.34 -2.39 -0.02 2.62 16 42 H 0.05 2.95 6.03 -2.39 -0.01 2.94 16 43 H 0.01 0.27 8.09 -2.39 -0.02 0.25 16 Total: -1.00 -77.14 338.93 1.65 -75.49 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -0.94 Total: 9.82 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: 5.87 Total: 16.93 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -5.24 Total: -124.67 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.07 Total: -26.12 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -77.14 1.65 -75.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040088096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.003 kcal (2) G-P(sol) polarization free energy of solvation -77.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds