Wall clock time and date at job start Fri Apr 10 2020 17:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99597 * 2 1 4 4 H 1.48499 * 109.46887 * 275.06691 * 3 2 1 5 5 H 1.48489 * 109.47302 * 35.07251 * 3 2 1 6 6 H 1.48501 * 109.46693 * 155.07212 * 3 2 1 7 7 C 1.38806 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99938 * 341.39039 * 7 2 1 9 9 N 1.36939 * 120.00091 * 161.38442 * 7 2 1 10 10 C 1.46925 * 120.67863 * 151.57205 * 9 7 2 11 11 C 1.53191 * 108.89106 * 125.96243 * 10 9 7 12 12 C 1.53130 * 109.28959 * 55.06970 * 11 10 9 13 13 C 1.52504 * 109.58090 * 299.50243 * 12 11 10 14 14 C 1.54157 * 110.04872 * 181.71882 * 13 12 11 15 15 C 1.55043 * 102.73323 * 97.46893 * 14 13 12 16 16 N 1.48161 * 103.31515 * 36.98975 * 15 14 13 17 17 C 1.34775 * 127.02243 * 140.95724 * 16 15 14 18 18 O 1.21602 * 120.00132 * 359.69609 * 17 16 15 19 19 C 1.47428 * 119.99445 * 179.69254 * 17 16 15 20 20 C 1.41286 * 126.42102 * 351.39824 * 19 17 16 21 21 N 1.30446 * 108.02772 * 179.85228 * 20 19 17 22 22 N 1.39930 * 108.89473 * 0.41395 * 21 20 19 23 23 H 0.96999 * 125.75586 * 179.74164 * 22 21 20 24 24 C 1.34264 * 108.49412 * 359.72927 * 22 21 20 25 25 C 1.47604 * 105.94638 * 320.97652 * 16 15 14 26 26 C 1.47034 * 120.67700 * 331.55664 * 9 7 2 27 27 H 0.96999 * 119.99994 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.56559 * 6.14470 * 10 9 7 29 29 H 1.08997 * 109.57043 * 245.78495 * 10 9 7 30 30 H 1.09007 * 109.50343 * 295.12798 * 11 10 9 31 31 H 1.08996 * 109.50425 * 175.01283 * 11 10 9 32 32 H 1.09004 * 109.44576 * 59.52420 * 12 11 10 33 33 H 1.08990 * 109.45160 * 179.47319 * 12 11 10 34 34 H 1.09000 * 110.75847 * 215.78093 * 14 13 12 35 35 H 1.09003 * 110.76268 * 339.15303 * 14 13 12 36 36 H 1.09000 * 110.64872 * 278.53493 * 15 14 13 37 37 H 1.09002 * 110.79077 * 155.51284 * 15 14 13 38 38 H 1.08007 * 125.98046 * 359.97438 * 20 19 17 39 39 H 1.07998 * 126.29207 * 179.97438 * 24 22 21 40 40 H 1.08997 * 109.97774 * 265.99807 * 25 16 15 41 41 H 1.09002 * 110.00236 * 144.74539 * 25 16 15 42 42 H 1.09000 * 109.58395 * 352.59144 * 26 9 7 43 43 H 1.08998 * 109.58391 * 113.01004 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3905 2.1083 -1.3946 5 1 1.5053 2.6194 0.8044 6 1 3.5972 1.4117 0.5901 7 6 2.0103 -1.2021 -0.0005 8 1 1.5126 -2.1131 0.2975 9 7 3.3259 -1.2329 -0.3791 10 6 4.2376 -2.2508 0.1606 11 6 4.9104 -2.9824 -1.0051 12 6 5.5941 -1.9597 -1.9170 13 6 4.5536 -0.9912 -2.4694 14 6 5.2241 0.0172 -3.4233 15 6 4.9497 -0.5986 -4.8195 16 7 3.5873 -1.1642 -4.6812 17 6 2.6058 -1.1513 -5.6047 18 8 2.7956 -0.6296 -6.6866 19 6 1.3020 -1.7699 -5.3032 20 6 0.9877 -2.5548 -4.1712 21 7 -0.2627 -2.9149 -4.2641 22 7 -0.7977 -2.3933 -5.4473 23 1 -1.7078 -2.5151 -5.7597 24 6 0.1612 -1.6958 -6.0771 25 6 3.5247 -1.7441 -3.3254 26 6 3.8550 -0.2482 -1.3343 27 1 -0.4850 0.8400 0.0004 28 1 3.6738 -2.9637 0.7622 29 1 4.9973 -1.7705 0.7772 30 1 4.1587 -3.5309 -1.5729 31 1 5.6540 -3.6786 -0.6174 32 1 6.3390 -1.4052 -1.3461 33 1 6.0817 -2.4782 -2.7425 34 1 4.7592 0.9993 -3.3361 35 1 6.2954 0.0774 -3.2312 36 1 5.6715 -1.3846 -5.0414 37 1 4.9703 0.1700 -5.5922 38 1 1.6637 -2.8101 -3.3685 39 1 0.0590 -1.1731 -7.0166 40 1 3.7751 -2.8043 -3.3618 41 1 2.5260 -1.6118 -2.9090 42 1 3.0354 0.3469 -1.7371 43 1 4.5687 0.4031 -0.8300 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040094680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:22 Heat of formation + Delta-G solvation = 78.660775 kcal Electronic energy + Delta-G solvation = -26675.878656 eV Core-core repulsion = 23144.774383 eV Total energy + Delta-G solvation = -3531.104274 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.19381 -39.96326 -38.13707 -35.81693 -33.11092 -32.11896 -31.22540 -30.71819 -30.14960 -28.87343 -25.97438 -25.36584 -23.82784 -22.61149 -22.02418 -21.39849 -20.21159 -19.35326 -18.61505 -17.90736 -16.71199 -16.11395 -15.76187 -15.31260 -15.02706 -14.55389 -14.36367 -14.28985 -13.81210 -13.61301 -13.48549 -13.29847 -13.00371 -12.60020 -12.37330 -12.27939 -12.00212 -11.71608 -11.57574 -11.31092 -11.03042 -10.91353 -10.77647 -10.51438 -10.38702 -10.05010 -9.85517 -9.66697 -9.58244 -9.54243 -9.43884 -8.70814 -8.63448 -8.31095 -6.96862 -5.95040 -3.33494 1.70477 2.46783 2.86908 3.30442 3.31433 3.47190 3.48190 3.71822 4.51019 4.65586 4.75918 4.93437 4.98304 5.05361 5.10307 5.29219 5.36505 5.43788 5.44696 5.54471 5.55938 5.66833 5.77473 5.81837 5.94481 5.97005 5.99849 6.15871 6.20655 6.25543 6.29418 6.39367 6.48272 6.54491 6.57917 6.65915 6.65973 6.79277 6.90620 7.23022 7.70848 7.85656 7.95269 8.32699 8.49897 8.92785 9.71021 10.08907 11.20116 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.011712 B = 0.007320 C = 0.005848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.094953 B = 3824.263703 C = 4786.595014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.028 3.972 3 Si 0.875 3.125 4 H -0.290 1.290 5 H -0.304 1.304 6 H -0.268 1.268 7 C -0.261 4.261 8 H 0.087 0.913 9 N -0.605 5.605 10 C 0.147 3.853 11 C -0.139 4.139 12 C -0.095 4.095 13 C -0.086 4.086 14 C -0.129 4.129 15 C 0.110 3.890 16 N -0.616 5.616 17 C 0.616 3.384 18 O -0.564 6.564 19 C -0.291 4.291 20 C 0.087 3.913 21 N -0.286 5.286 22 N -0.467 5.467 23 H 0.442 0.558 24 C 0.126 3.874 25 C 0.104 3.896 26 C 0.140 3.860 27 H 0.261 0.739 28 H 0.063 0.937 29 H 0.021 0.979 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.202 0.798 39 H 0.187 0.813 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.072 0.928 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.343 -4.627 -9.488 12.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.171 4.171 3 Si 0.706 3.294 4 H -0.217 1.217 5 H -0.233 1.233 6 H -0.193 1.193 7 C -0.389 4.389 8 H 0.105 0.895 9 N -0.328 5.328 10 C 0.021 3.979 11 C -0.178 4.178 12 C -0.133 4.133 13 C -0.088 4.088 14 C -0.168 4.168 15 C -0.012 4.012 16 N -0.348 5.348 17 C 0.407 3.593 18 O -0.445 6.445 19 C -0.306 4.306 20 C -0.101 4.101 21 N -0.106 5.106 22 N -0.171 5.171 23 H 0.286 0.714 24 C -0.027 4.027 25 C -0.018 4.018 26 C 0.014 3.986 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.219 0.781 39 H 0.204 0.796 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.090 0.910 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 6.234 -4.934 -9.507 12.393 hybrid contribution 0.577 1.537 -0.406 1.691 sum 6.812 -3.397 -9.913 12.498 Atomic orbital electron populations 1.69814 1.05633 1.26375 1.52808 1.25288 0.95162 0.97365 0.99329 0.87059 0.80247 0.85106 0.76977 1.21728 1.23256 1.19291 1.18895 0.83818 0.94500 1.41729 0.89504 1.44387 1.07582 1.33559 1.47310 1.20939 0.92463 0.91352 0.93131 1.22082 0.99432 0.97636 0.98690 1.21400 0.96638 0.96713 0.98533 1.21620 0.95320 0.95891 0.95997 1.22794 1.00918 0.99160 0.93917 1.22395 0.83083 0.97853 0.97914 1.48603 1.12807 1.58197 1.15233 1.16809 0.81851 0.78107 0.82490 1.90719 1.82161 1.48009 1.23605 1.20198 0.95953 1.13982 1.00465 1.24826 0.93332 0.94743 0.97185 1.77293 1.11051 1.21763 1.00518 1.46288 1.12804 1.40466 1.17566 0.71443 1.22909 0.88042 0.93933 0.97841 1.22614 1.02224 0.96474 0.80462 1.21352 0.96617 0.91657 0.88930 0.92874 0.91880 0.96066 0.91843 0.92563 0.92102 0.92736 0.90852 0.90103 0.91317 0.90171 0.78134 0.79561 0.91540 0.87849 0.91022 0.95273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.97 55.49 0.78 -26.34 16 2 C 0.03 0.78 5.26 -17.43 -0.09 0.69 16 3 Si 0.88 22.00 24.33 -169.99 -4.14 17.86 16 4 H -0.29 -7.18 6.74 56.52 0.38 -6.79 16 5 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 6 H -0.27 -6.53 6.33 56.52 0.36 -6.17 16 7 C -0.26 -6.85 10.05 -15.06 -0.15 -7.00 16 8 H 0.09 2.45 8.06 -52.49 -0.42 2.03 16 9 N -0.60 -13.15 2.53 -172.60 -0.44 -13.58 16 10 C 0.15 2.63 6.50 -3.71 -0.02 2.60 16 11 C -0.14 -1.99 5.87 -26.57 -0.16 -2.14 16 12 C -0.10 -1.28 4.40 -26.92 -0.12 -1.40 16 13 C -0.09 -1.36 0.61 -154.07 -0.09 -1.45 16 14 C -0.13 -1.79 6.15 -25.05 -0.15 -1.95 16 15 C 0.11 1.53 7.09 -2.05 -0.01 1.52 16 16 N -0.62 -10.14 3.30 -171.10 -0.56 -10.70 16 17 C 0.62 11.06 7.88 -12.52 -0.10 10.96 16 18 O -0.56 -11.15 17.12 5.28 0.09 -11.06 16 19 C -0.29 -4.88 6.07 -105.07 -0.64 -5.52 16 20 C 0.09 1.52 10.34 -16.98 -0.18 1.35 16 21 N -0.29 -4.96 12.63 30.86 0.39 -4.57 16 22 N -0.47 -6.14 7.29 30.85 0.22 -5.91 16 23 H 0.44 3.97 8.96 -182.73 -1.64 2.33 16 24 C 0.13 1.72 11.83 -16.56 -0.20 1.52 16 25 C 0.10 1.70 3.94 -3.14 -0.01 1.69 16 26 C 0.14 2.84 2.48 -3.96 -0.01 2.83 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.93 6.65 -51.92 -0.35 0.58 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.11 7.84 -51.93 -0.41 0.71 16 35 H 0.08 0.92 7.83 -51.93 -0.41 0.51 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.13 7.85 -51.93 -0.41 0.73 16 38 H 0.20 3.47 4.94 -52.48 -0.26 3.21 16 39 H 0.19 1.92 8.06 -52.49 -0.42 1.50 16 40 H 0.07 0.98 6.42 -51.93 -0.33 0.65 16 41 H 0.10 2.01 4.89 -51.93 -0.25 1.75 16 42 H 0.07 1.66 4.62 -51.93 -0.24 1.42 16 43 H 0.03 0.60 6.83 -51.93 -0.35 0.25 16 LS Contribution 329.71 15.07 4.97 4.97 Total: -1.00 -33.43 329.71 -7.84 -41.27 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.22 Total: 4.38 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -1.93 Total: 3.69 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: 0.39 Total: -61.11 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.86 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.43 -7.84 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040094680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.926 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds