Wall clock time and date at job start Fri Apr 10 2020 17:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99597 * 2 1 4 4 H 1.48499 * 109.46887 * 275.06691 * 3 2 1 5 5 H 1.48489 * 109.47302 * 35.07251 * 3 2 1 6 6 H 1.48501 * 109.46693 * 155.07212 * 3 2 1 7 7 C 1.38806 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99938 * 341.39039 * 7 2 1 9 9 N 1.36939 * 120.00091 * 161.38442 * 7 2 1 10 10 C 1.46925 * 120.67863 * 151.57205 * 9 7 2 11 11 C 1.53191 * 108.89106 * 125.96243 * 10 9 7 12 12 C 1.53130 * 109.28959 * 55.06970 * 11 10 9 13 13 C 1.52504 * 109.58090 * 299.50243 * 12 11 10 14 14 C 1.54157 * 110.04872 * 181.71882 * 13 12 11 15 15 C 1.55043 * 102.73323 * 97.46893 * 14 13 12 16 16 N 1.48161 * 103.31515 * 36.98975 * 15 14 13 17 17 C 1.34775 * 127.02243 * 140.95724 * 16 15 14 18 18 O 1.21602 * 120.00132 * 359.69609 * 17 16 15 19 19 C 1.47428 * 119.99445 * 179.69254 * 17 16 15 20 20 C 1.41286 * 126.42102 * 351.39824 * 19 17 16 21 21 N 1.30446 * 108.02772 * 179.85228 * 20 19 17 22 22 N 1.39930 * 108.89473 * 0.41395 * 21 20 19 23 23 H 0.96999 * 125.75586 * 179.74164 * 22 21 20 24 24 C 1.34264 * 108.49412 * 359.72927 * 22 21 20 25 25 C 1.47604 * 105.94638 * 320.97652 * 16 15 14 26 26 C 1.47034 * 120.67700 * 331.55664 * 9 7 2 27 27 H 0.96999 * 119.99994 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.56559 * 6.14470 * 10 9 7 29 29 H 1.08997 * 109.57043 * 245.78495 * 10 9 7 30 30 H 1.09007 * 109.50343 * 295.12798 * 11 10 9 31 31 H 1.08996 * 109.50425 * 175.01283 * 11 10 9 32 32 H 1.09004 * 109.44576 * 59.52420 * 12 11 10 33 33 H 1.08990 * 109.45160 * 179.47319 * 12 11 10 34 34 H 1.09000 * 110.75847 * 215.78093 * 14 13 12 35 35 H 1.09003 * 110.76268 * 339.15303 * 14 13 12 36 36 H 1.09000 * 110.64872 * 278.53493 * 15 14 13 37 37 H 1.09002 * 110.79077 * 155.51284 * 15 14 13 38 38 H 1.08007 * 125.98046 * 359.97438 * 20 19 17 39 39 H 1.07998 * 126.29207 * 179.97438 * 24 22 21 40 40 H 1.08997 * 109.97774 * 265.99807 * 25 16 15 41 41 H 1.09002 * 110.00236 * 144.74539 * 25 16 15 42 42 H 1.09000 * 109.58395 * 352.59144 * 26 9 7 43 43 H 1.08998 * 109.58391 * 113.01004 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3905 2.1083 -1.3946 5 1 1.5053 2.6194 0.8044 6 1 3.5972 1.4117 0.5901 7 6 2.0103 -1.2021 -0.0005 8 1 1.5126 -2.1131 0.2975 9 7 3.3259 -1.2329 -0.3791 10 6 4.2376 -2.2508 0.1606 11 6 4.9104 -2.9824 -1.0051 12 6 5.5941 -1.9597 -1.9170 13 6 4.5536 -0.9912 -2.4694 14 6 5.2241 0.0172 -3.4233 15 6 4.9497 -0.5986 -4.8195 16 7 3.5873 -1.1642 -4.6812 17 6 2.6058 -1.1513 -5.6047 18 8 2.7956 -0.6296 -6.6866 19 6 1.3020 -1.7699 -5.3032 20 6 0.9877 -2.5548 -4.1712 21 7 -0.2627 -2.9149 -4.2641 22 7 -0.7977 -2.3933 -5.4473 23 1 -1.7078 -2.5151 -5.7597 24 6 0.1612 -1.6958 -6.0771 25 6 3.5247 -1.7441 -3.3254 26 6 3.8550 -0.2482 -1.3343 27 1 -0.4850 0.8400 0.0004 28 1 3.6738 -2.9637 0.7622 29 1 4.9973 -1.7705 0.7772 30 1 4.1587 -3.5309 -1.5729 31 1 5.6540 -3.6786 -0.6174 32 1 6.3390 -1.4052 -1.3461 33 1 6.0817 -2.4782 -2.7425 34 1 4.7592 0.9993 -3.3361 35 1 6.2954 0.0774 -3.2312 36 1 5.6715 -1.3846 -5.0414 37 1 4.9703 0.1700 -5.5922 38 1 1.6637 -2.8101 -3.3685 39 1 0.0590 -1.1731 -7.0166 40 1 3.7751 -2.8043 -3.3618 41 1 2.5260 -1.6118 -2.9090 42 1 3.0354 0.3469 -1.7371 43 1 4.5687 0.4031 -0.8300 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040094680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:21 Heat of formation + Delta-G solvation = 54.525051 kcal Electronic energy + Delta-G solvation = -26676.925260 eV Core-core repulsion = 23144.774383 eV Total energy + Delta-G solvation = -3532.150877 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.42671 -41.24612 -39.52563 -37.29465 -34.80001 -33.46467 -32.66011 -32.32475 -31.41065 -30.08629 -27.43837 -27.02379 -25.08010 -24.15481 -23.31499 -22.66421 -21.60045 -20.60546 -19.99883 -19.16056 -18.54462 -17.49893 -17.02107 -16.92237 -16.36872 -15.91291 -15.81830 -15.62618 -15.29913 -15.11300 -14.80370 -14.67358 -14.51318 -14.01467 -13.79961 -13.68288 -13.44245 -13.08434 -12.92398 -12.83400 -12.62176 -12.20789 -12.17956 -12.01918 -11.92355 -11.56798 -11.45735 -11.13621 -11.06896 -10.89479 -10.81201 -10.62509 -9.98274 -9.55892 -8.82506 -8.11924 -5.43153 0.53424 1.13458 1.27795 1.37946 1.45227 1.79313 2.08723 2.40766 2.42403 3.10501 3.35765 3.49471 3.63147 3.81217 3.85742 3.89537 4.06296 4.26979 4.31283 4.34916 4.38431 4.45703 4.52664 4.57173 4.73520 4.75628 4.80902 4.85430 4.92429 5.01989 5.05685 5.14786 5.19957 5.24219 5.30476 5.35659 5.40546 5.55781 5.66004 5.93251 6.18952 6.24013 6.48200 6.55428 6.97966 7.17359 7.69020 8.09747 9.07313 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.011712 B = 0.007320 C = 0.005848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.094953 B = 3824.263703 C = 4786.595014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.031 4.031 3 Si 0.933 3.067 4 H -0.290 1.290 5 H -0.319 1.319 6 H -0.251 1.251 7 C -0.231 4.231 8 H 0.056 0.944 9 N -0.616 5.616 10 C 0.139 3.861 11 C -0.131 4.131 12 C -0.089 4.089 13 C -0.082 4.082 14 C -0.122 4.122 15 C 0.109 3.891 16 N -0.620 5.620 17 C 0.611 3.389 18 O -0.589 6.589 19 C -0.324 4.324 20 C 0.079 3.921 21 N -0.323 5.323 22 N -0.448 5.448 23 H 0.460 0.540 24 C 0.148 3.852 25 C 0.112 3.888 26 C 0.140 3.860 27 H 0.255 0.745 28 H 0.052 0.948 29 H 0.034 0.966 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.194 0.806 39 H 0.225 0.775 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.036 0.964 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.460 -5.117 -10.810 15.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.225 4.225 3 Si 0.764 3.236 4 H -0.217 1.217 5 H -0.248 1.248 6 H -0.175 1.175 7 C -0.361 4.361 8 H 0.073 0.927 9 N -0.340 5.340 10 C 0.015 3.985 11 C -0.170 4.170 12 C -0.127 4.127 13 C -0.084 4.084 14 C -0.160 4.160 15 C -0.013 4.013 16 N -0.351 5.351 17 C 0.403 3.597 18 O -0.472 6.472 19 C -0.338 4.338 20 C -0.109 4.109 21 N -0.144 5.144 22 N -0.154 5.154 23 H 0.308 0.692 24 C -0.006 4.006 25 C -0.010 4.010 26 C 0.015 3.985 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.136 0.864 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.210 0.790 39 H 0.241 0.759 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.054 0.946 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.411 -5.455 -10.815 15.339 hybrid contribution -0.427 1.590 0.006 1.646 sum 8.984 -3.865 -10.808 14.576 Atomic orbital electron populations 1.69954 1.07242 1.26472 1.56470 1.25808 0.95605 1.00276 1.00839 0.86124 0.79494 0.81431 0.76584 1.21740 1.24822 1.17538 1.18804 0.85756 0.92927 1.38597 0.92659 1.44492 1.06563 1.34735 1.48216 1.21165 0.91981 0.90443 0.94898 1.21993 0.99830 0.97952 0.97198 1.21420 0.95814 0.95981 0.99448 1.21536 0.95658 0.96648 0.94559 1.22798 1.02749 0.97420 0.93070 1.22612 0.82217 0.98656 0.97782 1.48710 1.13674 1.57883 1.14854 1.16980 0.82381 0.77946 0.82439 1.90689 1.82680 1.49370 1.24476 1.20375 0.96877 1.15346 1.01236 1.24768 0.93468 0.95223 0.97435 1.77196 1.11297 1.23278 1.02642 1.46263 1.13681 1.39310 1.16189 0.69202 1.23447 0.86790 0.92285 0.98116 1.22489 1.00525 0.97571 0.80450 1.21303 0.95661 0.91553 0.90005 0.93578 0.92962 0.94840 0.92590 0.89213 0.90580 0.89477 0.92753 0.86364 0.88307 0.90561 0.78990 0.75896 0.89754 0.91588 0.94610 0.94899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.17 13.97 21.65 0.30 -59.87 16 2 C -0.03 -1.77 5.26 84.86 0.45 -1.33 16 3 Si 0.93 46.89 24.33 68.60 1.67 48.56 16 4 H -0.29 -14.35 6.74 99.48 0.67 -13.68 16 5 H -0.32 -16.59 7.11 99.48 0.71 -15.88 16 6 H -0.25 -11.74 6.33 99.48 0.63 -11.11 16 7 C -0.23 -12.49 10.05 84.03 0.84 -11.65 16 8 H 0.06 3.29 8.06 -2.91 -0.02 3.27 16 9 N -0.62 -26.52 2.53 -699.98 -1.77 -28.30 16 10 C 0.14 4.72 6.50 86.36 0.56 5.28 16 11 C -0.13 -3.25 5.87 30.70 0.18 -3.07 16 12 C -0.09 -1.96 4.40 30.47 0.13 -1.83 16 13 C -0.08 -2.37 0.61 -51.90 -0.03 -2.40 16 14 C -0.12 -2.97 6.15 31.69 0.19 -2.77 16 15 C 0.11 2.69 7.09 86.76 0.62 3.31 16 16 N -0.62 -19.59 3.30 -813.50 -2.68 -22.27 16 17 C 0.61 21.59 7.88 86.66 0.68 22.27 16 18 O -0.59 -22.77 17.12 -4.04 -0.07 -22.84 16 19 C -0.32 -10.84 6.07 -20.15 -0.12 -10.96 16 20 C 0.08 2.83 10.34 85.65 0.89 3.71 16 21 N -0.32 -11.44 12.63 -56.27 -0.71 -12.15 16 22 N -0.45 -11.43 7.29 -56.31 -0.41 -11.84 16 23 H 0.46 7.66 8.96 -213.43 -1.91 5.74 16 24 C 0.15 3.86 11.83 84.28 1.00 4.85 16 25 C 0.11 3.52 3.94 86.36 0.34 3.86 16 26 C 0.14 5.50 2.48 86.14 0.21 5.71 16 27 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 28 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 29 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.49 6.65 -2.38 -0.02 1.47 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.54 7.84 -2.39 -0.02 1.52 16 35 H 0.12 2.03 7.83 -2.39 -0.02 2.01 16 36 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.08 1.98 7.85 -2.39 -0.02 1.96 16 38 H 0.19 7.02 4.94 -2.91 -0.01 7.01 16 39 H 0.22 4.01 8.06 -2.91 -0.02 3.98 16 40 H 0.08 2.33 6.42 -2.39 -0.02 2.32 16 41 H 0.07 2.63 4.89 -2.39 -0.01 2.62 16 42 H 0.04 1.67 4.62 -2.39 -0.01 1.66 16 43 H 0.03 1.28 6.83 -2.39 -0.02 1.26 16 Total: -1.00 -76.59 329.71 1.29 -75.30 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -0.98 Total: 18.40 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 5.94 Total: 15.00 kcal Atomic # 7 Polarization: -129.16 SS G_CDS: -5.27 Total: -134.43 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.07 Total: -22.84 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.67 Total: 48.56 kcal Total: -76.59 1.29 -75.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040094680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.829 kcal (2) G-P(sol) polarization free energy of solvation -76.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds