Wall clock time and date at job start Fri Apr 10 2020 17:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99723 * 2 1 4 4 H 1.48504 * 109.46709 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47446 * 300.00051 * 3 2 1 6 6 H 1.48500 * 109.47020 * 60.00437 * 3 2 1 7 7 C 1.38810 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00008 * 197.24982 * 7 2 1 9 9 N 1.36943 * 119.99764 * 17.24042 * 7 2 1 10 10 C 1.46931 * 120.67718 * 207.38466 * 9 7 2 11 11 C 1.53131 * 108.88104 * 233.99821 * 10 9 7 12 12 C 1.53132 * 109.32144 * 304.92315 * 11 10 9 13 13 C 1.52496 * 109.58007 * 60.51859 * 12 11 10 14 14 C 1.54188 * 110.00464 * 61.58830 * 13 12 11 15 15 C 1.55028 * 102.72746 * 97.45251 * 14 13 12 16 16 N 1.48165 * 103.31507 * 37.00824 * 15 14 13 17 17 C 1.34776 * 127.02819 * 141.00307 * 16 15 14 18 18 O 1.21605 * 120.00006 * 179.97438 * 17 16 15 19 19 C 1.47411 * 119.99754 * 359.97387 * 17 16 15 20 20 N 1.31616 * 125.86658 * 359.69029 * 19 17 16 21 21 C 1.33096 * 109.09622 * 179.83460 * 20 19 17 22 22 C 1.35560 * 108.34818 * 0.42998 * 21 20 19 23 23 N 1.35400 * 107.16243 * 359.74449 * 22 21 20 24 24 H 0.96998 * 126.43831 * 179.97438 * 23 22 21 25 25 C 1.47620 * 105.94711 * 320.97885 * 16 15 14 26 26 C 1.47036 * 120.68174 * 27.37281 * 9 7 2 27 27 H 0.96997 * 119.99770 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.57222 * 353.82707 * 10 9 7 29 29 H 1.09004 * 109.56580 * 114.06339 * 10 9 7 30 30 H 1.08994 * 109.46435 * 184.98165 * 11 10 9 31 31 H 1.09003 * 109.50657 * 64.88978 * 11 10 9 32 32 H 1.09000 * 109.44613 * 300.49329 * 12 11 10 33 33 H 1.08999 * 109.44515 * 180.54947 * 12 11 10 34 34 H 1.09000 * 110.75564 * 215.76657 * 14 13 12 35 35 H 1.09006 * 110.75632 * 339.13990 * 14 13 12 36 36 H 1.09000 * 110.65796 * 278.54861 * 15 14 13 37 37 H 1.09004 * 110.79415 * 155.52977 * 15 14 13 38 38 H 1.07999 * 125.82366 * 180.21348 * 21 20 19 39 39 H 1.08005 * 126.42035 * 179.76899 * 22 21 20 40 40 H 1.08997 * 109.96958 * 265.97666 * 25 16 15 41 41 H 1.08991 * 109.99961 * 144.72327 * 25 16 15 42 42 H 1.09004 * 109.58214 * 7.42916 * 26 9 7 43 43 H 1.08998 * 109.69237 * 247.08907 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0539 -1.2232 0.2768 9 7 1.3718 -2.3613 -0.3526 10 6 1.8229 -3.6559 0.1758 11 6 2.0818 -4.6066 -0.9964 12 6 0.8225 -4.6968 -1.8631 13 6 0.4776 -3.3153 -2.4089 14 6 1.6266 -2.7970 -3.2969 15 6 1.1400 -3.1506 -4.7258 16 7 -0.3208 -2.9125 -4.6574 17 6 -1.0999 -2.3675 -5.6126 18 8 -2.2928 -2.2313 -5.4199 19 6 -0.5059 -1.9365 -6.8911 20 7 0.7658 -2.0237 -7.2188 21 6 0.9327 -1.5418 -8.4482 22 6 -0.2719 -1.1270 -8.9111 23 7 -1.1802 -1.3721 -7.9373 24 1 -2.1307 -1.1825 -7.9750 25 6 -0.7487 -3.3947 -3.3294 26 6 0.2205 -2.3358 -1.2668 27 1 -0.4850 0.8400 0.0004 28 1 2.7427 -3.5178 0.7440 29 1 1.0527 -4.0740 0.8241 30 1 2.3315 -5.5959 -0.6134 31 1 2.9097 -4.2282 -1.5959 32 1 -0.0071 -5.0665 -1.2604 33 1 1.0013 -5.3807 -2.6928 34 1 1.7456 -1.7194 -3.1848 35 1 2.5572 -3.3156 -3.0663 36 1 1.3488 -4.1954 -4.9556 37 1 1.6019 -2.4960 -5.4649 38 1 1.8689 -1.4872 -8.9840 39 1 -0.4702 -0.6842 -9.8761 40 1 -1.0940 -4.4260 -3.4014 41 1 -1.5466 -2.7613 -2.9421 42 1 0.0954 -1.3303 -1.6689 43 1 -0.6815 -2.6293 -0.7299 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040194954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:31 Heat of formation + Delta-G solvation = 58.281574 kcal Electronic energy + Delta-G solvation = -25937.320533 eV Core-core repulsion = 22405.332551 eV Total energy + Delta-G solvation = -3531.987982 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.32787 -39.89170 -38.19329 -35.76876 -33.21422 -32.75642 -31.35922 -29.98988 -29.67427 -29.09432 -25.90623 -25.27015 -23.42939 -22.53627 -21.91639 -21.58328 -20.70515 -19.87679 -18.38166 -17.52450 -16.75235 -16.38787 -15.88911 -15.39653 -14.92782 -14.76969 -14.15259 -14.02414 -13.95091 -13.84322 -13.45829 -13.16856 -13.08353 -12.60239 -12.35727 -12.27407 -11.94857 -11.66794 -11.05575 -10.98269 -10.68843 -10.65307 -10.42679 -10.39266 -10.29646 -10.16390 -10.05734 -9.76150 -9.70497 -9.51207 -9.34926 -8.82441 -8.44427 -8.37764 -6.63642 -5.75928 -3.17120 1.30831 2.48124 2.53024 3.38969 3.42127 3.45987 3.47451 3.48940 4.22173 4.51844 4.74060 4.98860 5.11646 5.18721 5.20989 5.33043 5.49669 5.61883 5.67018 5.68850 5.74083 5.83039 5.99025 6.05707 6.12041 6.21731 6.28445 6.31993 6.39859 6.50794 6.55455 6.59367 6.77426 6.83938 6.92356 6.96534 6.97633 7.06163 7.37303 7.59406 7.67694 7.71958 7.83212 8.20454 8.47400 9.23973 9.88079 10.44899 11.32568 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.014208 B = 0.004884 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.235076 B = 5731.090266 C = 6668.372361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.249 4.249 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.144 3.856 11 C -0.135 4.135 12 C -0.094 4.094 13 C -0.095 4.095 14 C -0.109 4.109 15 C 0.086 3.914 16 N -0.587 5.587 17 C 0.616 3.384 18 O -0.551 6.551 19 C 0.160 3.840 20 N -0.439 5.439 21 C -0.031 4.031 22 C -0.030 4.030 23 N -0.526 5.526 24 H 0.430 0.570 25 C 0.120 3.880 26 C 0.189 3.811 27 H 0.253 0.747 28 H 0.052 0.948 29 H 0.016 0.984 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.113 0.887 38 H 0.178 0.822 39 H 0.185 0.815 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 -6.657 -15.893 17.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.018 3.982 11 C -0.174 4.174 12 C -0.132 4.132 13 C -0.098 4.098 14 C -0.147 4.147 15 C -0.036 4.036 16 N -0.318 5.318 17 C 0.402 3.598 18 O -0.429 6.429 19 C -0.102 4.102 20 N -0.162 5.162 21 C -0.183 4.183 22 C -0.169 4.169 23 N -0.128 5.128 24 H 0.269 0.731 25 C -0.002 4.002 26 C 0.062 3.938 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.130 0.870 38 H 0.195 0.805 39 H 0.202 0.798 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 0.664 -6.735 -15.260 16.693 hybrid contribution -0.662 1.359 -0.691 1.662 sum 0.002 -5.376 -15.951 16.833 Atomic orbital electron populations 1.70031 1.05226 1.25354 1.53991 1.25000 0.95206 0.98289 1.01047 0.86301 0.79451 0.84283 0.77252 1.20209 1.21663 1.21785 1.19190 0.92641 0.84778 1.41234 0.91636 1.44015 1.35332 1.01374 1.50363 1.20896 0.97436 0.86999 0.92911 1.22077 0.97514 0.98898 0.98953 1.21359 0.98224 0.95248 0.98357 1.21858 0.93257 0.97734 0.96940 1.22690 0.97860 1.02618 0.91557 1.23149 0.78830 1.01589 1.00055 1.48414 1.10376 1.58017 1.14997 1.16001 0.84898 0.78143 0.80779 1.90830 1.14303 1.57726 1.80006 1.22691 0.88259 1.06651 0.92610 1.70250 1.13794 1.18388 1.13751 1.22568 0.98152 1.04571 0.93032 1.22948 0.90308 1.07690 0.95977 1.42951 1.12066 1.44906 1.12871 0.73108 1.22196 0.98577 0.98847 0.80582 1.20754 0.88595 0.97333 0.87071 0.93714 0.92988 0.96615 0.93194 0.91929 0.92545 0.93385 0.90300 0.90182 0.91704 0.86957 0.80499 0.79783 0.91783 0.90072 0.89278 0.96426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 11.18 55.49 0.62 -25.67 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.25 -6.70 9.59 -15.06 -0.14 -6.84 16 8 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.28 2.81 -172.60 -0.48 -14.77 16 10 C 0.14 2.93 6.50 -3.74 -0.02 2.91 16 11 C -0.14 -2.23 5.87 -26.60 -0.16 -2.39 16 12 C -0.09 -1.51 4.47 -26.92 -0.12 -1.63 16 13 C -0.10 -1.73 0.63 -154.05 -0.10 -1.83 16 14 C -0.11 -1.91 5.75 -25.04 -0.14 -2.05 16 15 C 0.09 1.33 6.70 -2.05 -0.01 1.31 16 16 N -0.59 -10.07 3.30 -171.12 -0.56 -10.63 16 17 C 0.62 10.81 7.89 -12.53 -0.10 10.71 16 18 O -0.55 -10.83 17.44 5.27 0.09 -10.73 16 19 C 0.16 2.36 7.83 -154.52 -1.21 1.15 16 20 N -0.44 -6.21 8.17 -11.26 -0.09 -6.30 16 21 C -0.03 -0.32 11.85 -17.96 -0.21 -0.54 16 22 C -0.03 -0.26 12.00 -16.93 -0.20 -0.46 16 23 N -0.53 -5.81 6.14 -10.78 -0.07 -5.87 16 24 H 0.43 3.85 8.96 -40.82 -0.37 3.49 16 25 C 0.12 2.11 6.28 -3.15 -0.02 2.09 16 26 C 0.19 4.39 3.65 -3.94 -0.01 4.38 16 27 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.04 6.19 -51.93 -0.32 0.72 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.62 7.74 -51.93 -0.40 1.22 16 35 H 0.08 1.32 5.89 -51.93 -0.31 1.02 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.11 1.75 5.43 -51.93 -0.28 1.47 16 38 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.19 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.06 1.01 7.68 -51.93 -0.40 0.61 16 41 H 0.08 1.58 7.59 -51.93 -0.39 1.19 16 42 H 0.09 2.39 5.91 -51.93 -0.31 2.09 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -32.52 338.36 -9.09 -41.61 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.12 Total: 3.67 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -2.54 Total: 6.80 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: -0.59 Total: -63.24 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.52 -9.09 -41.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040194954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.892 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds