Wall clock time and date at job start Fri Apr 10 2020 17:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99723 * 2 1 4 4 H 1.48504 * 109.46709 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47446 * 300.00051 * 3 2 1 6 6 H 1.48500 * 109.47020 * 60.00437 * 3 2 1 7 7 C 1.38810 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00008 * 197.24982 * 7 2 1 9 9 N 1.36943 * 119.99764 * 17.24042 * 7 2 1 10 10 C 1.46931 * 120.67718 * 207.38466 * 9 7 2 11 11 C 1.53131 * 108.88104 * 233.99821 * 10 9 7 12 12 C 1.53132 * 109.32144 * 304.92315 * 11 10 9 13 13 C 1.52496 * 109.58007 * 60.51859 * 12 11 10 14 14 C 1.54188 * 110.00464 * 61.58830 * 13 12 11 15 15 C 1.55028 * 102.72746 * 97.45251 * 14 13 12 16 16 N 1.48165 * 103.31507 * 37.00824 * 15 14 13 17 17 C 1.34776 * 127.02819 * 141.00307 * 16 15 14 18 18 O 1.21605 * 120.00006 * 179.97438 * 17 16 15 19 19 C 1.47411 * 119.99754 * 359.97387 * 17 16 15 20 20 N 1.31616 * 125.86658 * 359.69029 * 19 17 16 21 21 C 1.33096 * 109.09622 * 179.83460 * 20 19 17 22 22 C 1.35560 * 108.34818 * 0.42998 * 21 20 19 23 23 N 1.35400 * 107.16243 * 359.74449 * 22 21 20 24 24 H 0.96998 * 126.43831 * 179.97438 * 23 22 21 25 25 C 1.47620 * 105.94711 * 320.97885 * 16 15 14 26 26 C 1.47036 * 120.68174 * 27.37281 * 9 7 2 27 27 H 0.96997 * 119.99770 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.57222 * 353.82707 * 10 9 7 29 29 H 1.09004 * 109.56580 * 114.06339 * 10 9 7 30 30 H 1.08994 * 109.46435 * 184.98165 * 11 10 9 31 31 H 1.09003 * 109.50657 * 64.88978 * 11 10 9 32 32 H 1.09000 * 109.44613 * 300.49329 * 12 11 10 33 33 H 1.08999 * 109.44515 * 180.54947 * 12 11 10 34 34 H 1.09000 * 110.75564 * 215.76657 * 14 13 12 35 35 H 1.09006 * 110.75632 * 339.13990 * 14 13 12 36 36 H 1.09000 * 110.65796 * 278.54861 * 15 14 13 37 37 H 1.09004 * 110.79415 * 155.52977 * 15 14 13 38 38 H 1.07999 * 125.82366 * 180.21348 * 21 20 19 39 39 H 1.08005 * 126.42035 * 179.76899 * 22 21 20 40 40 H 1.08997 * 109.96958 * 265.97666 * 25 16 15 41 41 H 1.08991 * 109.99961 * 144.72327 * 25 16 15 42 42 H 1.09004 * 109.58214 * 7.42916 * 26 9 7 43 43 H 1.08998 * 109.69237 * 247.08907 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0539 -1.2232 0.2768 9 7 1.3718 -2.3613 -0.3526 10 6 1.8229 -3.6559 0.1758 11 6 2.0818 -4.6066 -0.9964 12 6 0.8225 -4.6968 -1.8631 13 6 0.4776 -3.3153 -2.4089 14 6 1.6266 -2.7970 -3.2969 15 6 1.1400 -3.1506 -4.7258 16 7 -0.3208 -2.9125 -4.6574 17 6 -1.0999 -2.3675 -5.6126 18 8 -2.2928 -2.2313 -5.4199 19 6 -0.5059 -1.9365 -6.8911 20 7 0.7658 -2.0237 -7.2188 21 6 0.9327 -1.5418 -8.4482 22 6 -0.2719 -1.1270 -8.9111 23 7 -1.1802 -1.3721 -7.9373 24 1 -2.1307 -1.1825 -7.9750 25 6 -0.7487 -3.3947 -3.3294 26 6 0.2205 -2.3358 -1.2668 27 1 -0.4850 0.8400 0.0004 28 1 2.7427 -3.5178 0.7440 29 1 1.0527 -4.0740 0.8241 30 1 2.3315 -5.5959 -0.6134 31 1 2.9097 -4.2282 -1.5959 32 1 -0.0071 -5.0665 -1.2604 33 1 1.0013 -5.3807 -2.6928 34 1 1.7456 -1.7194 -3.1848 35 1 2.5572 -3.3156 -3.0663 36 1 1.3488 -4.1954 -4.9556 37 1 1.6019 -2.4960 -5.4649 38 1 1.8689 -1.4872 -8.9840 39 1 -0.4702 -0.6842 -9.8761 40 1 -1.0940 -4.4260 -3.4014 41 1 -1.5466 -2.7613 -2.9421 42 1 0.0954 -1.3303 -1.6689 43 1 -0.6815 -2.6293 -0.7299 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040194954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:30 Heat of formation + Delta-G solvation = 37.087574 kcal Electronic energy + Delta-G solvation = -25938.239574 eV Core-core repulsion = 22405.332551 eV Total energy + Delta-G solvation = -3532.907023 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.22821 -41.29864 -39.63526 -37.34502 -34.91344 -33.81903 -32.85900 -31.72363 -30.75667 -30.48103 -27.43558 -27.06366 -24.75448 -24.01630 -23.34692 -22.45470 -22.16807 -21.03330 -19.78068 -18.97643 -18.41700 -17.71610 -17.15951 -16.79487 -16.52217 -16.05102 -15.76621 -15.38130 -15.12037 -14.90800 -14.82808 -14.63507 -14.49015 -14.25946 -13.84072 -13.73532 -13.40715 -13.20207 -12.93056 -12.74289 -12.48442 -12.21710 -12.11356 -11.78238 -11.76373 -11.60709 -11.34697 -11.28409 -11.11301 -11.04321 -10.85361 -10.52415 -9.91725 -9.48393 -8.65288 -7.86493 -5.29869 0.29316 1.41501 1.43733 1.44678 1.54440 1.63515 2.31868 2.42545 2.50263 3.15086 3.27765 3.54523 3.80307 3.90171 3.92176 4.02733 4.30191 4.34604 4.35205 4.45425 4.47212 4.51238 4.65063 4.70083 4.79812 4.90102 4.91798 4.93733 5.04629 5.13498 5.20187 5.25935 5.31842 5.35126 5.45045 5.54995 5.61958 5.69714 5.72759 5.78955 6.14844 6.36449 6.40098 6.67821 6.98820 7.15668 7.89196 8.40416 9.19525 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.014208 B = 0.004884 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.235076 B = 5731.090266 C = 6668.372361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.053 4.053 3 Si 0.957 3.043 4 H -0.260 1.260 5 H -0.298 1.298 6 H -0.293 1.293 7 C -0.249 4.249 8 H 0.070 0.930 9 N -0.605 5.605 10 C 0.136 3.864 11 C -0.123 4.123 12 C -0.090 4.090 13 C -0.086 4.086 14 C -0.102 4.102 15 C 0.099 3.901 16 N -0.595 5.595 17 C 0.609 3.391 18 O -0.587 6.587 19 C 0.110 3.890 20 N -0.453 5.453 21 C -0.051 4.051 22 C 0.007 3.993 23 N -0.519 5.519 24 H 0.437 0.563 25 C 0.123 3.877 26 C 0.202 3.798 27 H 0.245 0.755 28 H 0.053 0.947 29 H 0.009 0.991 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.037 0.963 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.207 0.793 39 H 0.237 0.763 40 H 0.089 0.911 41 H 0.047 0.953 42 H 0.044 0.956 43 H -0.015 1.015 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.841 -8.137 -18.635 20.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.247 4.247 3 Si 0.786 3.214 4 H -0.184 1.184 5 H -0.225 1.225 6 H -0.221 1.221 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.328 5.328 10 C 0.011 3.989 11 C -0.162 4.162 12 C -0.127 4.127 13 C -0.088 4.088 14 C -0.140 4.140 15 C -0.022 4.022 16 N -0.325 5.325 17 C 0.397 3.603 18 O -0.468 6.468 19 C -0.148 4.148 20 N -0.177 5.177 21 C -0.204 4.204 22 C -0.133 4.133 23 N -0.122 5.122 24 H 0.278 0.722 25 C 0.001 3.999 26 C 0.076 3.924 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.131 0.869 38 H 0.224 0.776 39 H 0.253 0.747 40 H 0.107 0.893 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.003 0.997 Dipole moment (debyes) X Y Z Total from point charges 2.690 -8.255 -17.981 19.968 hybrid contribution -1.264 1.853 0.095 2.245 sum 1.426 -6.403 -17.886 19.051 Atomic orbital electron populations 1.70204 1.06763 1.25350 1.56160 1.25713 0.95825 1.01326 1.01874 0.85345 0.79125 0.80494 0.76442 1.18436 1.22514 1.22055 1.19532 0.92908 0.85918 1.39555 0.91224 1.44273 1.35183 1.02294 1.51017 1.21119 0.97012 0.86011 0.94748 1.21958 0.97660 0.99403 0.97155 1.21366 0.98102 0.93792 0.99472 1.21635 0.93979 0.98032 0.95151 1.22564 0.98303 1.00131 0.92980 1.23138 0.77592 1.03155 0.98314 1.48507 1.11120 1.58190 1.14669 1.16456 0.84620 0.77430 0.81819 1.90785 1.15797 1.59185 1.81056 1.22075 0.89109 1.10769 0.92870 1.70123 1.13478 1.18533 1.15549 1.23235 1.00264 1.04759 0.92146 1.23839 0.88900 1.04124 0.96423 1.43056 1.12840 1.43870 1.12431 0.72193 1.22088 0.97322 0.99463 0.81061 1.20416 0.87377 0.96379 0.88227 0.94579 0.92852 0.97260 0.89587 0.91534 0.92518 0.89709 0.94405 0.88464 0.88863 0.86909 0.77578 0.74705 0.89274 0.93454 0.93772 0.99682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.90 11.18 21.65 0.24 -57.66 16 2 C -0.05 -3.01 4.92 84.86 0.42 -2.60 16 3 Si 0.96 46.30 29.59 68.60 2.03 48.33 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 6 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 7 C -0.25 -13.71 9.59 84.03 0.81 -12.91 16 8 H 0.07 3.72 7.89 -2.91 -0.02 3.69 16 9 N -0.60 -30.12 2.81 -699.99 -1.97 -32.08 16 10 C 0.14 5.45 6.50 86.34 0.56 6.01 16 11 C -0.12 -3.69 5.87 30.68 0.18 -3.51 16 12 C -0.09 -2.65 4.47 30.47 0.14 -2.51 16 13 C -0.09 -3.13 0.63 -51.88 -0.03 -3.17 16 14 C -0.10 -3.52 5.75 31.69 0.18 -3.34 16 15 C 0.10 2.95 6.70 86.75 0.58 3.53 16 16 N -0.59 -20.65 3.30 -813.54 -2.68 -23.33 16 17 C 0.61 21.96 7.89 86.66 0.68 22.64 16 18 O -0.59 -24.23 17.44 -4.05 -0.07 -24.30 16 19 C 0.11 3.21 7.83 136.28 1.07 4.28 16 20 N -0.45 -12.10 8.17 -189.53 -1.55 -13.65 16 21 C -0.05 -0.92 11.85 83.88 0.99 0.07 16 22 C 0.01 0.10 12.00 83.52 1.00 1.10 16 23 N -0.52 -10.55 6.14 -188.02 -1.16 -11.70 16 24 H 0.44 7.29 8.96 -92.71 -0.83 6.46 16 25 C 0.12 4.43 6.28 86.35 0.54 4.97 16 26 C 0.20 9.95 3.65 86.16 0.31 10.26 16 27 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 28 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 29 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 1.98 6.19 -2.39 -0.01 1.96 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.04 1.61 7.74 -2.39 -0.02 1.59 16 35 H 0.10 3.01 5.89 -2.38 -0.01 2.99 16 36 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.11 3.41 5.43 -2.38 -0.01 3.40 16 38 H 0.21 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.24 0.59 8.06 -2.91 -0.02 0.56 16 40 H 0.09 2.73 7.68 -2.39 -0.02 2.71 16 41 H 0.05 2.00 7.59 -2.39 -0.02 1.98 16 42 H 0.04 2.56 5.91 -2.38 -0.01 2.55 16 43 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 Total: -1.00 -76.78 338.36 2.49 -74.29 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.20 Total: 15.25 kcal Atomic # 6 Polarization: 17.42 SS G_CDS: 7.44 Total: 24.85 kcal Atomic # 7 Polarization: -131.31 SS G_CDS: -7.11 Total: -138.42 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.07 Total: -24.30 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -76.78 2.49 -74.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040194954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.375 kcal (2) G-P(sol) polarization free energy of solvation -76.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds