Wall clock time and date at job start Fri Apr 10 2020 17:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99888 * 2 1 4 4 H 1.48498 * 109.47138 * 270.00053 * 3 2 1 5 5 H 1.48498 * 109.47246 * 30.00573 * 3 2 1 6 6 H 1.48507 * 109.46837 * 150.00143 * 3 2 1 7 7 C 1.38806 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00354 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00003 * 359.97438 * 7 2 1 10 10 C 1.47135 * 125.60876 * 359.97438 * 9 7 2 11 11 C 1.54582 * 107.32893 * 179.08838 * 10 9 7 12 12 C 1.53719 * 102.78265 * 339.10084 * 11 10 9 13 13 C 1.53232 * 111.52298 * 153.99109 * 12 11 10 14 14 C 1.55264 * 102.46346 * 143.29684 * 13 12 11 15 15 N 1.48314 * 103.48690 * 323.86069 * 14 13 12 16 16 C 1.34776 * 127.04599 * 218.43283 * 15 14 13 17 17 O 1.21281 * 120.00241 * 179.97438 * 16 15 14 18 18 C 1.50702 * 119.99983 * 359.96417 * 16 15 14 19 19 N 1.46497 * 109.47445 * 179.97438 * 18 16 15 20 20 C 1.34948 * 126.03895 * 124.99991 * 19 18 16 21 21 C 1.35317 * 107.74217 * 179.97438 * 20 19 18 22 22 C 1.39862 * 107.92475 * 359.97438 * 21 20 19 23 23 N 1.30844 * 108.20356 * 359.74092 * 22 21 20 24 24 C 1.47887 * 105.95042 * 38.40325 * 15 14 13 25 25 C 1.47706 * 125.60923 * 180.02562 * 9 7 2 26 26 H 0.96997 * 120.00071 * 0.02562 * 1 2 3 27 27 H 1.08991 * 109.87716 * 59.64932 * 10 9 7 28 28 H 1.09006 * 109.86905 * 298.51990 * 10 9 7 29 29 H 1.09006 * 110.74582 * 220.77513 * 11 10 9 30 30 H 1.09004 * 110.90972 * 97.50245 * 11 10 9 31 31 H 1.08996 * 110.80471 * 261.54191 * 13 12 11 32 32 H 1.09001 * 110.80444 * 24.86143 * 13 12 11 33 33 H 1.09002 * 110.62312 * 82.32400 * 14 13 12 34 34 H 1.08999 * 110.62053 * 205.33788 * 14 13 12 35 35 H 1.09000 * 109.47077 * 299.99584 * 18 16 15 36 36 H 1.08999 * 109.47265 * 59.99291 * 18 16 15 37 37 H 1.07997 * 126.12478 * 359.95246 * 20 19 18 38 38 H 1.08000 * 126.03540 * 179.97438 * 21 20 19 39 39 H 1.07998 * 125.90049 * 179.97438 * 22 21 20 40 40 H 1.09002 * 110.04929 * 215.57754 * 24 15 14 41 41 H 1.09005 * 110.04486 * 94.15818 * 24 15 14 42 42 H 1.09002 * 110.39627 * 83.78289 * 25 9 7 43 43 H 1.09000 * 110.39200 * 321.39384 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1387 -2.5318 0.0005 11 6 -0.4527 -4.0452 -0.0234 12 6 0.8482 -4.6539 -0.5712 13 6 1.0308 -6.1023 -0.1056 14 6 1.6742 -6.7751 -1.3482 15 7 1.0083 -6.1018 -2.4897 16 6 0.6144 -6.6668 -3.6482 17 8 0.0776 -5.9913 -4.5006 18 6 0.8410 -8.1378 -3.8845 19 7 0.3279 -8.5048 -5.2066 20 6 1.0251 -9.1155 -6.1874 21 6 0.1952 -9.2776 -7.2439 22 6 -1.0520 -8.7484 -6.8966 23 7 -0.9754 -8.2902 -5.6735 24 6 0.8640 -4.6834 -2.0969 25 6 1.9356 -3.7332 -0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5588 -2.0522 -0.8834 28 1 -0.5546 -2.0813 0.9018 29 1 -1.2886 -4.2557 -0.6907 30 1 -0.6596 -4.4156 0.9807 31 1 1.7015 -6.1516 0.7522 32 1 0.0689 -6.5574 0.1303 33 1 2.7487 -6.5935 -1.3700 34 1 1.4642 -7.8447 -1.3575 35 1 1.9084 -8.3533 -3.8361 36 1 0.3192 -8.7133 -3.1199 37 1 2.0601 -9.4200 -6.1381 38 1 0.4508 -9.7349 -8.1883 39 1 -1.9282 -8.7257 -7.5276 40 1 -0.0702 -4.2804 -2.4881 41 1 1.7072 -4.1039 -2.4731 42 1 2.1932 -4.0335 1.0151 43 1 2.8196 -3.7494 -0.6380 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041074723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:56 Heat of formation + Delta-G solvation = 64.757963 kcal Electronic energy + Delta-G solvation = -24975.548876 eV Core-core repulsion = 21443.841731 eV Total energy + Delta-G solvation = -3531.707145 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.11244 -41.33828 -39.69824 -37.20281 -34.64538 -34.17087 -32.15288 -30.97439 -30.85017 -29.77943 -28.60285 -27.06270 -25.65874 -23.67411 -22.27348 -22.10171 -21.92855 -20.35016 -20.18065 -18.85724 -18.35263 -17.88654 -17.19673 -16.75756 -16.60339 -15.91806 -15.74141 -15.50424 -15.09042 -14.92718 -14.66493 -14.44822 -14.28088 -13.84170 -13.66853 -13.62179 -13.30984 -13.16892 -12.99629 -12.92646 -12.83695 -12.59162 -12.44106 -12.04518 -11.83306 -11.61539 -11.52215 -11.33592 -11.32513 -11.15912 -10.72123 -10.31151 -9.78503 -9.48861 -8.89850 -7.85776 -5.21084 0.96008 1.43096 1.45528 1.48142 1.50987 1.53860 1.97882 2.02679 2.48196 3.27283 3.34881 3.53228 3.60526 3.68170 3.79053 3.86290 4.07470 4.11885 4.23058 4.25179 4.29010 4.45468 4.57386 4.62099 4.71846 4.75606 4.77802 4.91598 4.93677 4.96646 4.99587 5.09482 5.17751 5.18035 5.30001 5.42536 5.45872 5.64692 5.74504 5.75427 6.13838 6.18400 6.49833 6.81985 7.04612 7.08713 7.77446 8.41674 9.24702 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.024398 B = 0.003054 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.359715 B = 9166.174651 C = 9608.151938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.072 4.072 3 Si 0.977 3.023 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.263 1.263 7 C -0.237 4.237 8 H 0.086 0.914 9 N -0.628 5.628 10 C 0.186 3.814 11 C -0.117 4.117 12 C -0.074 4.074 13 C -0.110 4.110 14 C 0.096 3.904 15 N -0.618 5.618 16 C 0.506 3.494 17 O -0.580 6.580 18 C 0.126 3.874 19 N -0.377 5.377 20 C 0.057 3.943 21 C -0.285 4.285 22 C 0.024 3.976 23 N -0.330 5.330 24 C 0.138 3.862 25 C 0.148 3.852 26 H 0.244 0.756 27 H -0.003 1.003 28 H 0.006 0.994 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.126 0.874 35 H 0.175 0.825 36 H 0.140 0.860 37 H 0.218 0.782 38 H 0.171 0.829 39 H 0.196 0.804 40 H 0.036 0.964 41 H 0.048 0.952 42 H 0.044 0.956 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.327 -25.898 -5.131 27.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.264 4.264 3 Si 0.805 3.195 4 H -0.218 1.218 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.367 4.367 8 H 0.104 0.896 9 N -0.355 5.355 10 C 0.061 3.939 11 C -0.156 4.156 12 C -0.075 4.075 13 C -0.149 4.149 14 C -0.024 4.024 15 N -0.352 5.352 16 C 0.295 3.705 17 O -0.458 6.458 18 C 0.002 3.998 19 N -0.160 5.160 20 C -0.088 4.088 21 C -0.314 4.314 22 C -0.162 4.162 23 N -0.151 5.151 24 C 0.015 3.985 25 C 0.023 3.977 26 H 0.053 0.947 27 H 0.015 0.985 28 H 0.024 0.976 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.129 0.871 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.144 0.856 35 H 0.192 0.808 36 H 0.158 0.842 37 H 0.235 0.765 38 H 0.189 0.811 39 H 0.213 0.787 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.430 -24.780 -4.569 25.776 hybrid contribution 0.123 1.748 -0.875 1.959 sum 5.553 -23.033 -5.445 24.310 Atomic orbital electron populations 1.70214 1.06447 1.25070 1.58655 1.25682 0.96561 1.01210 1.02975 0.85093 0.77857 0.79227 0.77275 1.21774 1.22261 1.18789 1.19485 0.91078 0.83738 1.42359 0.89595 1.44898 1.02132 1.01435 1.87009 1.20908 0.84105 0.91813 0.97072 1.22664 0.96365 0.95248 1.01301 1.21502 0.96094 0.97317 0.92627 1.22617 1.03071 0.90652 0.98525 1.23092 0.97875 0.98989 0.82469 1.49119 1.59157 1.10163 1.16756 1.21085 0.77984 0.91037 0.80404 1.90786 1.44373 1.65388 1.45296 1.21760 1.04626 0.90526 0.82866 1.48356 1.08171 1.46305 1.13145 1.23313 1.00406 0.97050 0.88025 1.21893 0.93544 1.13552 1.02397 1.24402 1.00662 0.97598 0.93531 1.77451 0.99158 1.23640 1.14863 1.21538 0.99929 0.82493 0.94550 1.21703 0.94222 0.83702 0.98052 0.94658 0.98454 0.97569 0.92107 0.89550 0.87133 0.89411 0.88508 0.85622 0.80820 0.84210 0.76513 0.81117 0.78722 0.94567 0.93330 0.93817 0.93795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.67 10.31 21.65 0.22 -59.45 16 2 C -0.07 -4.19 5.49 84.86 0.47 -3.73 16 3 Si 0.98 46.90 29.55 68.60 2.03 48.93 16 4 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.24 -13.39 10.28 84.03 0.86 -12.53 16 8 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 9 N -0.63 -32.10 3.41 -693.27 -2.36 -34.46 16 10 C 0.19 9.49 5.34 86.80 0.46 9.95 16 11 C -0.12 -4.29 5.74 31.37 0.18 -4.11 16 12 C -0.07 -2.27 0.74 -51.83 -0.04 -2.30 16 13 C -0.11 -1.97 6.20 31.45 0.20 -1.77 16 14 C 0.10 1.28 6.96 86.81 0.60 1.89 16 15 N -0.62 -15.46 3.32 -809.87 -2.69 -18.15 16 16 C 0.51 14.10 7.92 87.66 0.69 14.79 16 17 O -0.58 -23.94 16.07 -3.03 -0.05 -23.99 16 18 C 0.13 1.96 5.93 85.63 0.51 2.47 16 19 N -0.38 -8.38 3.39 -351.80 -1.19 -9.57 16 20 C 0.06 0.90 11.45 83.54 0.96 1.86 16 21 C -0.28 -5.09 10.80 21.99 0.24 -4.85 16 22 C 0.02 0.57 12.03 85.23 1.02 1.60 16 23 N -0.33 -9.88 11.66 -57.03 -0.67 -10.55 16 24 C 0.14 4.79 6.27 85.98 0.54 5.33 16 25 C 0.15 5.49 6.12 86.31 0.53 6.02 16 26 H 0.24 14.93 8.31 -92.71 -0.77 14.16 16 27 H 0.00 -0.17 7.38 -2.39 -0.02 -0.19 16 28 H 0.01 0.35 7.50 -2.38 -0.02 0.33 16 29 H 0.06 2.22 7.72 -2.38 -0.02 2.20 16 30 H 0.09 2.74 8.04 -2.39 -0.02 2.72 16 31 H 0.11 1.53 7.60 -2.39 -0.02 1.51 16 32 H 0.09 1.43 7.92 -2.39 -0.02 1.41 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.13 0.55 7.26 -2.39 -0.02 0.53 16 35 H 0.17 0.84 8.07 -2.39 -0.02 0.82 16 36 H 0.14 1.41 7.91 -2.39 -0.02 1.39 16 37 H 0.22 1.19 8.06 -2.91 -0.02 1.16 16 38 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 39 H 0.20 3.51 8.06 -2.91 -0.02 3.49 16 40 H 0.04 1.54 7.42 -2.39 -0.02 1.52 16 41 H 0.05 1.89 7.51 -2.38 -0.02 1.87 16 42 H 0.04 1.49 7.74 -2.39 -0.02 1.47 16 43 H 0.04 1.59 7.73 -2.39 -0.02 1.57 16 Total: -1.00 -90.49 348.56 3.52 -86.97 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 1.00 Total: 5.65 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 7.22 Total: 14.61 kcal Atomic # 7 Polarization: -125.49 SS G_CDS: -6.68 Total: -132.17 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.05 Total: -23.99 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -90.49 3.52 -86.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041074723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.729 kcal (2) G-P(sol) polarization free energy of solvation -90.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds