Wall clock time and date at job start Fri Apr 10 2020 17:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35365 * 126.38921 * 2 1 4 4 C 1.41500 * 105.50387 * 179.97438 * 3 2 1 5 5 C 1.47709 * 126.51722 * 180.02562 * 4 3 2 6 6 O 1.21569 * 120.00120 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99919 * 179.97438 * 5 4 3 8 8 C 1.47584 * 125.67392 * 359.69367 * 7 5 4 9 9 C 1.55430 * 104.91526 * 156.11407 * 8 7 5 10 10 C 1.53499 * 101.30204 * 35.61775 * 9 8 7 11 11 C 1.53474 * 111.80698 * 88.09122 * 10 9 8 12 12 C 1.54631 * 102.74306 * 154.35562 * 11 10 9 13 13 N 1.47151 * 107.34334 * 339.34531 * 12 11 10 14 14 C 1.36936 * 125.59755 * 179.10931 * 13 12 11 15 15 H 1.07998 * 120.00383 * 179.97438 * 14 13 12 16 16 C 1.38812 * 120.00113 * 359.97287 * 14 13 12 17 17 N 1.31622 * 119.99958 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00303 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46810 * 59.99613 * 18 16 14 20 20 H 1.48493 * 109.47522 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46945 * 300.00179 * 18 16 14 22 22 C 1.47754 * 108.80453 * 359.08337 * 13 12 11 23 23 C 1.47447 * 125.67666 * 179.97438 * 7 5 4 24 24 N 1.31807 * 106.96349 * 0.02562 * 4 3 2 25 25 N 1.28474 * 110.07444 * 359.97438 * 24 4 3 26 26 H 0.97001 * 124.88259 * 180.02562 * 25 24 4 27 27 H 1.09001 * 109.46665 * 269.99493 * 1 2 3 28 28 H 1.08998 * 109.46923 * 29.99305 * 1 2 3 29 29 H 1.08994 * 109.47237 * 149.99505 * 1 2 3 30 30 H 1.08001 * 127.24676 * 0.02562 * 3 2 1 31 31 H 1.08994 * 110.32917 * 275.09290 * 8 7 5 32 32 H 1.09001 * 110.33131 * 37.32154 * 8 7 5 33 33 H 1.08994 * 111.23033 * 277.55672 * 9 8 7 34 34 H 1.08998 * 110.96943 * 153.56681 * 9 8 7 35 35 H 1.09000 * 110.75595 * 272.66991 * 11 10 9 36 36 H 1.09004 * 110.75673 * 35.85831 * 11 10 9 37 37 H 1.08996 * 109.86827 * 98.78732 * 12 11 10 38 38 H 1.09003 * 109.86598 * 219.76529 * 12 11 10 39 39 H 0.97001 * 119.99497 * 180.02562 * 17 16 14 40 40 H 1.08999 * 110.39661 * 263.54252 * 22 13 12 41 41 H 1.08999 * 110.39649 * 141.13410 * 22 13 12 42 42 H 1.08994 * 109.99750 * 301.51691 * 23 7 5 43 43 H 1.08997 * 109.99146 * 62.80592 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3101 1.0897 0.0000 4 6 3.6322 0.5852 0.0006 5 6 4.8766 1.3810 0.0014 6 8 4.8215 2.5955 0.0011 7 7 6.0731 0.7607 0.0024 8 6 6.2854 -0.6998 0.0093 9 6 7.7009 -0.9012 -0.6002 10 6 8.4422 0.3258 -0.0513 11 6 9.0660 0.0473 1.3230 12 6 10.2395 1.0528 1.3750 13 7 10.5492 1.4376 -0.0111 14 6 11.5177 2.3267 -0.3941 15 1 11.6685 2.5431 -1.4414 16 6 12.3058 2.9499 0.5637 17 7 12.1224 2.6859 1.8401 18 14 13.6265 4.1633 0.0413 19 1 13.0000 5.2897 -0.6962 20 1 14.3223 4.6860 1.2445 21 1 14.6067 3.4791 -0.8398 22 6 9.6440 0.7067 -0.9219 23 6 7.3878 1.4282 0.0027 24 7 3.5420 -0.7297 0.0004 25 7 2.3080 -1.0871 0.0002 26 1 1.9965 -2.0058 0.0004 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5137 29 1 -0.3633 -0.8899 -0.5139 30 1 2.0058 2.1260 0.0004 31 1 6.2518 -1.0825 1.0293 32 1 5.5345 -1.1946 -0.6066 33 1 7.6678 -0.8833 -1.6895 34 1 8.1530 -1.8252 -0.2398 35 1 8.3499 0.2477 2.1200 36 1 9.4297 -0.9786 1.3814 37 1 9.9479 1.9332 1.9476 38 1 11.1094 0.5835 1.8346 39 1 12.6729 3.1217 2.5094 40 1 10.1334 -0.1882 -1.3064 41 1 9.3294 1.3512 -1.7427 42 1 7.4782 2.0739 -0.8707 43 1 7.5076 2.0149 0.9135 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041112750.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:06 Heat of formation + Delta-G solvation = 74.242710 kcal Electronic energy + Delta-G solvation = -25051.910655 eV Core-core repulsion = 21520.614799 eV Total energy + Delta-G solvation = -3531.295855 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.87167 -40.00286 -38.14467 -35.57688 -33.18082 -32.55140 -31.96466 -30.44234 -28.98293 -28.37489 -27.32548 -25.98115 -24.39188 -22.87528 -22.26448 -21.45007 -20.16959 -18.97824 -18.68412 -17.93866 -16.88485 -16.31410 -16.18825 -15.54843 -15.14091 -14.68079 -14.30781 -14.10290 -13.78269 -13.71083 -13.47032 -13.33155 -12.97077 -12.74113 -12.70408 -12.46059 -11.94773 -11.83854 -11.54786 -11.37690 -11.15629 -10.89300 -10.74300 -10.68463 -10.16383 -10.05544 -9.98366 -9.78329 -9.68268 -9.56664 -9.53650 -9.18355 -8.53352 -8.37751 -6.76408 -5.64352 -2.97584 1.46832 1.90793 2.57760 3.16597 3.46044 3.48149 3.50172 3.51332 4.23502 4.38299 4.55564 4.61101 4.82700 4.90817 5.05225 5.09246 5.21608 5.36576 5.43346 5.47210 5.53618 5.58793 5.66452 5.78823 5.94007 5.95072 6.06581 6.12444 6.17654 6.26878 6.33472 6.41995 6.45510 6.57786 6.64155 6.76499 6.81188 6.87499 7.59705 7.62197 7.68744 7.73538 7.89323 8.32015 8.32295 9.28718 9.88824 10.54950 11.47307 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.032857 B = 0.003038 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.960373 B = 9214.771953 C = 9623.975655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.010 3.990 3 C -0.179 4.179 4 C 0.001 3.999 5 C 0.609 3.391 6 O -0.534 6.534 7 N -0.604 5.604 8 C 0.105 3.895 9 C -0.119 4.119 10 C -0.083 4.083 11 C -0.131 4.131 12 C 0.179 3.821 13 N -0.605 5.605 14 C -0.227 4.227 15 H 0.077 0.923 16 C -0.009 4.009 17 N -0.923 5.923 18 Si 0.911 3.089 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.151 3.849 23 C 0.134 3.866 24 N -0.256 5.256 25 N -0.385 5.385 26 H 0.443 0.557 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.162 0.838 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.252 0.748 40 H 0.024 0.976 41 H 0.040 0.960 42 H 0.072 0.928 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.860 -11.835 -3.163 25.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.207 4.207 4 C -0.160 4.160 5 C 0.396 3.604 6 O -0.410 6.410 7 N -0.337 5.337 8 C -0.018 4.018 9 C -0.158 4.158 10 C -0.085 4.085 11 C -0.169 4.169 12 C 0.054 3.946 13 N -0.332 5.332 14 C -0.355 4.355 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.570 5.570 18 Si 0.742 3.258 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.213 1.213 22 C 0.025 3.975 23 C 0.012 3.988 24 N -0.092 5.092 25 N -0.100 5.100 26 H 0.287 0.713 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.180 0.820 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.042 0.958 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.103 -11.893 -3.045 25.283 hybrid contribution 0.115 0.776 -0.132 0.795 sum -21.988 -11.117 -3.177 24.843 Atomic orbital electron populations 1.20346 0.86572 1.03944 1.03375 1.21449 0.95366 0.87213 1.07535 1.21536 0.90440 0.99812 1.08872 1.21943 0.95124 0.89634 1.09252 1.16511 0.80672 0.85997 0.77257 1.90812 1.86244 1.12716 1.51189 1.48546 1.05436 1.08331 1.71373 1.22563 0.97573 0.80371 1.01256 1.22659 0.94124 0.98350 1.00653 1.21584 0.94833 0.93790 0.98257 1.22756 0.99202 1.00484 0.94451 1.21215 0.92579 0.94354 0.86465 1.44576 1.38623 1.48923 1.01084 1.19003 1.08396 1.15671 0.92449 0.90530 1.24790 0.99885 1.00405 0.95389 1.69957 1.41956 1.46063 0.99045 0.86206 0.81514 0.81050 0.77035 1.21174 1.21667 1.21252 1.21302 0.88571 0.95026 0.92636 1.21761 0.79159 0.94832 1.02999 1.73679 1.01010 1.15112 1.19390 1.43387 1.03157 1.09460 1.53959 0.71293 0.90282 0.89485 0.91153 0.82021 0.91527 0.89403 0.90738 0.89816 0.92178 0.92059 0.93633 0.93937 0.93774 0.95792 0.94159 0.90958 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.44 36.01 0.38 0.04 16 2 C 0.01 0.08 7.23 -82.21 -0.59 -0.51 16 3 C -0.18 -2.07 10.73 -39.36 -0.42 -2.49 16 4 C 0.00 0.02 6.97 -82.77 -0.58 -0.56 16 5 C 0.61 10.56 7.86 -12.39 -0.10 10.46 16 6 O -0.53 -10.97 17.26 5.30 0.09 -10.88 16 7 N -0.60 -9.92 3.34 -171.91 -0.57 -10.50 16 8 C 0.11 1.40 6.13 -2.16 -0.01 1.39 16 9 C -0.12 -1.61 6.07 -25.18 -0.15 -1.77 16 10 C -0.08 -1.45 0.61 -154.08 -0.09 -1.54 16 11 C -0.13 -2.43 5.79 -25.63 -0.15 -2.58 16 12 C 0.18 4.37 5.36 -2.83 -0.02 4.36 16 13 N -0.61 -15.57 3.41 -170.56 -0.58 -16.16 16 14 C -0.23 -6.42 10.28 -15.06 -0.15 -6.57 16 15 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 16 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 17 N -0.92 -27.59 10.30 55.49 0.57 -27.02 16 18 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 C 0.15 3.12 6.26 -3.24 -0.02 3.10 16 23 C 0.13 2.47 6.07 -3.70 -0.02 2.45 16 24 N -0.26 -2.98 9.35 33.42 0.31 -2.67 16 25 N -0.39 -3.08 6.83 33.50 0.23 -2.85 16 26 H 0.44 1.77 8.96 -190.44 -1.71 0.06 16 27 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.08 6.20 -51.93 -0.32 0.76 16 33 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 34 H 0.08 1.00 7.76 -51.93 -0.40 0.60 16 35 H 0.06 1.06 7.94 -51.93 -0.41 0.65 16 36 H 0.06 1.04 7.80 -51.93 -0.40 0.64 16 37 H 0.05 1.25 7.39 -51.93 -0.38 0.86 16 38 H 0.04 1.15 7.49 -51.93 -0.39 0.76 16 39 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.02 0.49 8.05 -51.93 -0.42 0.07 16 41 H 0.04 0.83 7.66 -51.93 -0.40 0.43 16 42 H 0.07 1.42 7.58 -51.93 -0.39 1.03 16 43 H 0.07 1.54 7.78 -51.93 -0.40 1.14 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -34.91 346.12 -9.51 -44.41 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -7.72 Total: -2.57 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -2.03 Total: 5.43 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.04 Total: -59.19 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.91 -9.51 -44.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041112750.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.657 kcal (2) G-P(sol) polarization free energy of solvation -34.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds