Wall clock time and date at job start Fri Apr 10 2020 17:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35365 * 126.38921 * 2 1 4 4 C 1.41500 * 105.50387 * 179.97438 * 3 2 1 5 5 C 1.47709 * 126.51722 * 180.02562 * 4 3 2 6 6 O 1.21569 * 120.00120 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99919 * 179.97438 * 5 4 3 8 8 C 1.47584 * 125.67392 * 359.69367 * 7 5 4 9 9 C 1.55430 * 104.91526 * 156.11407 * 8 7 5 10 10 C 1.53499 * 101.30204 * 35.61775 * 9 8 7 11 11 C 1.53474 * 111.80698 * 88.09122 * 10 9 8 12 12 C 1.54631 * 102.74306 * 154.35562 * 11 10 9 13 13 N 1.47151 * 107.34334 * 339.34531 * 12 11 10 14 14 C 1.36936 * 125.59755 * 179.10931 * 13 12 11 15 15 H 1.07998 * 120.00383 * 179.97438 * 14 13 12 16 16 C 1.38812 * 120.00113 * 359.97287 * 14 13 12 17 17 N 1.31622 * 119.99958 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00303 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46810 * 59.99613 * 18 16 14 20 20 H 1.48493 * 109.47522 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46945 * 300.00179 * 18 16 14 22 22 C 1.47754 * 108.80453 * 359.08337 * 13 12 11 23 23 C 1.47447 * 125.67666 * 179.97438 * 7 5 4 24 24 N 1.31807 * 106.96349 * 0.02562 * 4 3 2 25 25 N 1.28474 * 110.07444 * 359.97438 * 24 4 3 26 26 H 0.97001 * 124.88259 * 180.02562 * 25 24 4 27 27 H 1.09001 * 109.46665 * 269.99493 * 1 2 3 28 28 H 1.08998 * 109.46923 * 29.99305 * 1 2 3 29 29 H 1.08994 * 109.47237 * 149.99505 * 1 2 3 30 30 H 1.08001 * 127.24676 * 0.02562 * 3 2 1 31 31 H 1.08994 * 110.32917 * 275.09290 * 8 7 5 32 32 H 1.09001 * 110.33131 * 37.32154 * 8 7 5 33 33 H 1.08994 * 111.23033 * 277.55672 * 9 8 7 34 34 H 1.08998 * 110.96943 * 153.56681 * 9 8 7 35 35 H 1.09000 * 110.75595 * 272.66991 * 11 10 9 36 36 H 1.09004 * 110.75673 * 35.85831 * 11 10 9 37 37 H 1.08996 * 109.86827 * 98.78732 * 12 11 10 38 38 H 1.09003 * 109.86598 * 219.76529 * 12 11 10 39 39 H 0.97001 * 119.99497 * 180.02562 * 17 16 14 40 40 H 1.08999 * 110.39661 * 263.54252 * 22 13 12 41 41 H 1.08999 * 110.39649 * 141.13410 * 22 13 12 42 42 H 1.08994 * 109.99750 * 301.51691 * 23 7 5 43 43 H 1.08997 * 109.99146 * 62.80592 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3101 1.0897 0.0000 4 6 3.6322 0.5852 0.0006 5 6 4.8766 1.3810 0.0014 6 8 4.8215 2.5955 0.0011 7 7 6.0731 0.7607 0.0024 8 6 6.2854 -0.6998 0.0093 9 6 7.7009 -0.9012 -0.6002 10 6 8.4422 0.3258 -0.0513 11 6 9.0660 0.0473 1.3230 12 6 10.2395 1.0528 1.3750 13 7 10.5492 1.4376 -0.0111 14 6 11.5177 2.3267 -0.3941 15 1 11.6685 2.5431 -1.4414 16 6 12.3058 2.9499 0.5637 17 7 12.1224 2.6859 1.8401 18 14 13.6265 4.1633 0.0413 19 1 13.0000 5.2897 -0.6962 20 1 14.3223 4.6860 1.2445 21 1 14.6067 3.4791 -0.8398 22 6 9.6440 0.7067 -0.9219 23 6 7.3878 1.4282 0.0027 24 7 3.5420 -0.7297 0.0004 25 7 2.3080 -1.0871 0.0002 26 1 1.9965 -2.0058 0.0004 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5137 29 1 -0.3633 -0.8899 -0.5139 30 1 2.0058 2.1260 0.0004 31 1 6.2518 -1.0825 1.0293 32 1 5.5345 -1.1946 -0.6066 33 1 7.6678 -0.8833 -1.6895 34 1 8.1530 -1.8252 -0.2398 35 1 8.3499 0.2477 2.1200 36 1 9.4297 -0.9786 1.3814 37 1 9.9479 1.9332 1.9476 38 1 11.1094 0.5835 1.8346 39 1 12.6729 3.1217 2.5094 40 1 10.1334 -0.1882 -1.3064 41 1 9.3294 1.3512 -1.7427 42 1 7.4782 2.0739 -0.8707 43 1 7.5076 2.0149 0.9135 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041112750.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:06 Heat of formation + Delta-G solvation = 49.932464 kcal Electronic energy + Delta-G solvation = -25052.964826 eV Core-core repulsion = 21520.614799 eV Total energy + Delta-G solvation = -3532.350027 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.68595 -41.40006 -39.62919 -37.21240 -34.58707 -33.64630 -32.93618 -32.03575 -30.65308 -29.86155 -28.05050 -27.48727 -26.12622 -24.25773 -23.43777 -22.21967 -22.10850 -20.28890 -20.04167 -18.80124 -18.73193 -17.54464 -17.24561 -16.78363 -16.70328 -16.30314 -15.95917 -15.60299 -15.01315 -14.81238 -14.54586 -14.41590 -14.06218 -13.85917 -13.79604 -13.68166 -13.22364 -13.18142 -13.09919 -12.95145 -12.80927 -12.59429 -12.48323 -12.07129 -11.89875 -11.78081 -11.57326 -11.41047 -11.25942 -11.17973 -10.68219 -10.46511 -9.91459 -9.71740 -8.87362 -7.83397 -5.18371 0.46740 1.11164 1.44685 1.48672 1.54501 1.71635 2.14810 2.28464 2.50378 3.23338 3.34639 3.49441 3.62482 3.64841 3.80634 3.82570 4.04046 4.25601 4.30729 4.42504 4.43158 4.59748 4.62894 4.68758 4.74686 4.82252 4.82764 4.93311 4.97791 5.02676 5.04849 5.06883 5.12859 5.22404 5.30372 5.34308 5.40246 5.46586 5.68818 5.79019 6.13986 6.21046 6.43285 6.79426 7.05233 7.11799 7.79252 8.43671 9.26818 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.032857 B = 0.003038 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.960373 B = 9214.771953 C = 9623.975655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.038 3.962 3 C -0.209 4.209 4 C -0.030 4.030 5 C 0.602 3.398 6 O -0.583 6.583 7 N -0.604 5.604 8 C 0.109 3.891 9 C -0.106 4.106 10 C -0.072 4.072 11 C -0.112 4.112 12 C 0.187 3.813 13 N -0.628 5.628 14 C -0.240 4.240 15 H 0.082 0.918 16 C -0.069 4.069 17 N -0.952 5.952 18 Si 0.978 3.022 19 H -0.280 1.280 20 H -0.295 1.295 21 H -0.274 1.274 22 C 0.147 3.853 23 C 0.139 3.861 24 N -0.257 5.257 25 N -0.362 5.362 26 H 0.463 0.537 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.157 0.843 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.001 0.999 38 H 0.009 0.991 39 H 0.245 0.755 40 H 0.044 0.956 41 H 0.037 0.963 42 H 0.052 0.948 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.213 -14.869 -4.343 29.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.237 4.237 4 C -0.189 4.189 5 C 0.391 3.609 6 O -0.462 6.462 7 N -0.336 5.336 8 C -0.013 4.013 9 C -0.144 4.144 10 C -0.073 4.073 11 C -0.150 4.150 12 C 0.061 3.939 13 N -0.354 5.354 14 C -0.370 4.370 15 H 0.100 0.900 16 C -0.262 4.262 17 N -0.602 5.602 18 Si 0.806 3.194 19 H -0.207 1.207 20 H -0.221 1.221 21 H -0.199 1.199 22 C 0.022 3.978 23 C 0.016 3.984 24 N -0.095 5.095 25 N -0.080 5.080 26 H 0.312 0.688 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.175 0.825 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.106 0.894 34 H 0.131 0.869 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.019 0.981 38 H 0.028 0.972 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -24.479 -15.000 -4.257 29.023 hybrid contribution 0.731 1.687 0.211 1.850 sum -23.748 -13.313 -4.046 27.524 Atomic orbital electron populations 1.20545 0.83118 1.05628 1.04806 1.21909 0.97007 0.85801 1.04173 1.21701 0.90227 1.00948 1.10845 1.21521 0.94274 0.90615 1.12519 1.17077 0.81811 0.85863 0.76170 1.90765 1.87102 1.14934 1.53390 1.48617 1.04375 1.09660 1.70972 1.22742 0.97973 0.78233 1.02312 1.22692 0.93148 0.97087 1.01453 1.21431 0.93504 0.95405 0.96985 1.22595 0.96868 1.00051 0.95528 1.20949 0.93502 0.93861 0.85540 1.44884 1.38959 1.49065 1.02504 1.19425 1.08780 1.15949 0.92803 0.90015 1.25654 1.02418 1.02581 0.95505 1.70195 1.42848 1.47171 0.99941 0.85164 0.78921 0.78824 0.76513 1.20660 1.22112 1.19947 1.21510 0.88923 0.94974 0.92349 1.21494 0.81287 0.95132 1.00451 1.73539 1.02807 1.13695 1.19447 1.43493 1.02150 1.10690 1.51705 0.68775 0.88809 0.88889 0.88419 0.82503 0.90476 0.87614 0.89408 0.86855 0.91323 0.89127 0.98074 0.97234 0.94538 0.93844 0.94447 0.92983 0.93964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.44 71.24 0.74 0.42 16 2 C 0.04 0.50 7.23 41.40 0.30 0.80 16 3 C -0.21 -4.68 10.73 22.41 0.24 -4.44 16 4 C -0.03 -0.83 6.97 42.46 0.30 -0.54 16 5 C 0.60 21.47 7.86 86.75 0.68 22.15 16 6 O -0.58 -25.46 17.26 -3.93 -0.07 -25.53 16 7 N -0.60 -19.86 3.34 -816.08 -2.73 -22.58 16 8 C 0.11 2.61 6.13 87.01 0.53 3.15 16 9 C -0.11 -2.49 6.07 31.60 0.19 -2.30 16 10 C -0.07 -2.44 0.61 -51.90 -0.03 -2.47 16 11 C -0.11 -4.11 5.79 31.31 0.18 -3.93 16 12 C 0.19 9.52 5.36 86.81 0.47 9.99 16 13 N -0.63 -33.15 3.41 -693.54 -2.36 -35.51 16 14 C -0.24 -13.96 10.28 84.03 0.86 -13.09 16 15 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 16 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 17 N -0.95 -59.56 10.30 21.65 0.22 -59.34 16 18 Si 0.98 47.62 29.55 68.60 2.03 49.64 16 19 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 20 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 21 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 22 C 0.15 6.02 6.26 86.21 0.54 6.56 16 23 C 0.14 5.31 6.07 86.08 0.52 5.84 16 24 N -0.26 -5.36 9.35 -48.18 -0.45 -5.81 16 25 N -0.36 -4.50 6.83 -47.93 -0.33 -4.82 16 26 H 0.46 1.60 8.96 -219.99 -1.97 -0.37 16 27 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.09 0.33 8.14 -2.39 -0.02 0.32 16 29 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.11 2.23 6.20 -2.39 -0.01 2.21 16 33 H 0.09 1.91 8.09 -2.39 -0.02 1.89 16 34 H 0.11 2.11 7.76 -2.39 -0.02 2.09 16 35 H 0.07 2.41 7.94 -2.39 -0.02 2.39 16 36 H 0.09 2.83 7.80 -2.38 -0.02 2.81 16 37 H 0.00 0.06 7.39 -2.39 -0.02 0.04 16 38 H 0.01 0.54 7.49 -2.39 -0.02 0.52 16 39 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 40 H 0.04 1.65 8.05 -2.39 -0.02 1.63 16 41 H 0.04 1.54 7.66 -2.39 -0.02 1.52 16 42 H 0.05 2.17 7.58 -2.39 -0.02 2.15 16 43 H 0.04 1.86 7.78 -2.39 -0.02 1.85 16 Total: -1.00 -82.08 346.12 1.36 -80.72 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -0.95 Total: 4.70 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 5.99 Total: 18.53 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -5.65 Total: -128.06 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.07 Total: -25.53 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.64 kcal Total: -82.08 1.36 -80.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041112750.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.650 kcal (2) G-P(sol) polarization free energy of solvation -82.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds