Wall clock time and date at job start Fri Apr 10 2020 17:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30863 * 125.41637 * 2 1 4 4 C 1.33326 * 109.68158 * 179.74737 * 3 2 1 5 5 C 1.36663 * 107.78668 * 0.38099 * 4 3 2 6 6 C 1.46758 * 126.84238 * 179.89820 * 5 4 3 7 7 O 1.21680 * 120.00256 * 354.23003 * 6 5 4 8 8 N 1.34776 * 119.99823 * 174.23475 * 6 5 4 9 9 C 1.48262 * 127.73452 * 173.18225 * 8 6 5 10 10 C 1.54711 * 104.66469 * 141.21049 * 9 8 6 11 11 C 1.53043 * 104.47510 * 23.67391 * 10 9 8 12 12 C 1.53886 * 111.34622 * 238.27220 * 11 10 9 13 13 C 1.55147 * 101.45163 * 273.28366 * 12 11 10 14 14 N 1.47538 * 105.06533 * 324.21002 * 13 12 11 15 15 C 1.36936 * 125.67054 * 203.97230 * 14 13 12 16 16 H 1.08005 * 120.00191 * 162.73278 * 15 14 13 17 17 C 1.38817 * 120.00116 * 342.72877 * 15 14 13 18 18 N 1.31617 * 119.99893 * 159.60328 * 17 15 14 19 19 Si 1.86801 * 119.99677 * 339.60890 * 17 15 14 20 20 H 1.48500 * 109.47257 * 84.58469 * 19 17 15 21 21 H 1.48502 * 109.46814 * 204.58409 * 19 17 15 22 22 H 1.48497 * 109.47053 * 324.58241 * 19 17 15 23 23 C 1.47600 * 108.52090 * 23.93477 * 14 13 12 24 24 C 1.48457 * 127.73605 * 353.21163 * 8 6 5 25 25 N 1.34492 * 125.42052 * 179.97438 * 2 1 3 26 26 H 0.97002 * 126.46914 * 0.03601 * 25 2 1 27 27 H 1.08995 * 109.46755 * 270.02365 * 1 2 3 28 28 H 1.09000 * 109.47283 * 30.01623 * 1 2 3 29 29 H 1.08993 * 109.47200 * 150.02084 * 1 2 3 30 30 H 1.07998 * 126.10252 * 180.28169 * 4 3 2 31 31 H 1.08996 * 110.40142 * 22.41035 * 9 8 6 32 32 H 1.09005 * 110.49237 * 260.05301 * 9 8 6 33 33 H 1.08996 * 110.43420 * 264.92089 * 10 9 8 34 34 H 1.09000 * 110.53818 * 142.47746 * 10 9 8 35 35 H 1.08994 * 111.02682 * 155.24563 * 12 11 10 36 36 H 1.08998 * 111.06159 * 31.33955 * 12 11 10 37 37 H 1.09001 * 110.33633 * 83.13610 * 13 12 11 38 38 H 1.09002 * 110.33971 * 205.28214 * 13 12 11 39 39 H 0.97008 * 119.99525 * 180.02562 * 18 17 15 40 40 H 1.09004 * 109.94390 * 238.66295 * 23 14 13 41 41 H 1.08994 * 109.96329 * 117.41875 * 23 14 13 42 42 H 1.08999 * 110.46210 * 99.67222 * 24 8 6 43 43 H 1.08996 * 110.46018 * 337.08479 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5487 0.7049 0.0055 5 6 3.5976 -0.6608 0.0005 6 6 4.8029 -1.4982 0.0017 7 8 5.9011 -0.9839 -0.0983 8 7 4.6933 -2.8368 0.1135 9 6 5.7707 -3.8484 -0.0044 10 6 5.4401 -4.9010 1.0801 11 6 3.9355 -4.7486 1.3151 12 6 3.6292 -4.4154 2.7859 13 6 3.5520 -5.8324 3.4131 14 7 2.9396 -6.6797 2.3721 15 6 2.2591 -7.8476 2.5914 16 1 1.6158 -8.2503 1.8229 17 6 2.3960 -8.5140 3.8014 18 7 1.4812 -9.3800 4.1829 19 14 3.8785 -8.1816 4.8882 20 1 3.6177 -6.9857 5.7290 21 1 4.1252 -9.3568 5.7619 22 1 5.0711 -7.9381 4.0376 23 6 3.1833 -6.0562 1.0567 24 6 3.4665 -3.6287 0.3818 25 7 2.2865 -1.0960 0.0005 26 1 1.9850 -2.0180 0.0004 27 1 -0.3632 0.0004 1.0276 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5135 30 1 4.3978 1.3722 0.0112 31 1 6.7418 -3.3938 0.1909 32 1 5.7582 -4.3056 -0.9939 33 1 5.9917 -4.6898 1.9962 34 1 5.6696 -5.9045 0.7217 35 1 2.6763 -3.8943 2.8786 36 1 4.4358 -3.8336 3.2319 37 1 4.5511 -6.1938 3.6565 38 1 2.9270 -5.8179 4.3061 39 1 1.5768 -9.8454 5.0287 40 1 2.2344 -5.8483 0.5622 41 1 3.7889 -6.7180 0.4376 42 1 3.0716 -4.0452 -0.5449 43 1 2.7149 -3.0119 0.8743 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041144683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:21 Heat of formation + Delta-G solvation = 45.427688 kcal Electronic energy + Delta-G solvation = -25517.746982 eV Core-core repulsion = 21985.201614 eV Total energy + Delta-G solvation = -3532.545369 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.36182 -41.44104 -39.75916 -37.42458 -34.63742 -33.97773 -32.98657 -32.33084 -30.97028 -30.30150 -28.53347 -27.51100 -25.62654 -24.37840 -22.94177 -22.77735 -22.24263 -21.00702 -20.23696 -18.93425 -18.77206 -17.39329 -17.30499 -17.00825 -16.72382 -16.42151 -16.28711 -15.39994 -15.23115 -15.19162 -14.85223 -14.61178 -14.33321 -14.09632 -13.85221 -13.84443 -13.54061 -13.44205 -13.23343 -13.05954 -12.96465 -12.62354 -12.43785 -12.24677 -11.92540 -11.72666 -11.53686 -11.45781 -11.31433 -11.25467 -11.12939 -10.84044 -10.03544 -9.51636 -9.05211 -8.17326 -5.43617 0.16715 1.28558 1.37590 1.44835 1.57868 1.69457 1.93670 2.18856 2.40078 3.05077 3.17882 3.21801 3.37059 3.44715 3.50788 3.70322 3.96794 4.08164 4.11255 4.18284 4.21820 4.29084 4.34698 4.49807 4.55875 4.66921 4.73978 4.74794 4.77670 4.81505 4.84906 4.88803 4.97903 5.09467 5.11135 5.14086 5.22351 5.28107 5.45177 5.66236 6.10565 6.17763 6.26902 6.75080 6.80016 6.89739 7.53799 8.10005 9.02489 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019446 B = 0.004001 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.536762 B = 6996.271911 C = 7826.204144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.246 3.754 3 N -0.526 5.526 4 C 0.060 3.940 5 C -0.099 4.099 6 C 0.617 3.383 7 O -0.566 6.566 8 N -0.620 5.620 9 C 0.112 3.888 10 C -0.117 4.117 11 C -0.073 4.073 12 C -0.106 4.106 13 C 0.101 3.899 14 N -0.626 5.626 15 C -0.227 4.227 16 H 0.067 0.933 17 C -0.037 4.037 18 N -0.959 5.959 19 Si 0.943 3.057 20 H -0.276 1.276 21 H -0.313 1.313 22 H -0.266 1.266 23 C 0.147 3.853 24 C 0.113 3.887 25 N -0.545 5.545 26 H 0.433 0.567 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.185 0.815 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.023 0.977 38 H 0.037 0.963 39 H 0.261 0.739 40 H 0.049 0.951 41 H 0.042 0.958 42 H 0.108 0.892 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.633 17.129 -10.428 20.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.018 4.018 3 N -0.247 5.247 4 C -0.094 4.094 5 C -0.215 4.215 6 C 0.408 3.592 7 O -0.445 6.445 8 N -0.353 5.353 9 C -0.010 4.010 10 C -0.155 4.155 11 C -0.075 4.075 12 C -0.145 4.145 13 C -0.024 4.024 14 N -0.353 5.353 15 C -0.355 4.355 16 H 0.085 0.915 17 C -0.232 4.232 18 N -0.606 5.606 19 Si 0.773 3.227 20 H -0.202 1.202 21 H -0.242 1.242 22 H -0.191 1.191 23 C 0.023 3.977 24 C -0.010 4.010 25 N -0.156 5.156 26 H 0.280 0.720 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.202 0.798 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.041 0.959 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.126 0.874 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.878 18.105 -10.406 20.967 hybrid contribution 0.859 -1.797 1.042 2.248 sum 2.737 16.308 -9.364 19.003 Atomic orbital electron populations 1.20567 0.81231 1.06144 1.05529 1.24292 0.97437 0.81067 0.98977 1.70231 1.02183 1.29628 1.22653 1.22830 0.95270 0.91552 0.99727 1.20853 0.84197 0.95530 1.20956 1.16516 0.86851 0.79910 0.75958 1.90825 1.27599 1.72868 1.53211 1.48965 1.11920 1.04252 1.70137 1.22515 0.91215 0.87373 0.99874 1.22503 0.93752 0.99905 0.99388 1.21450 0.96226 0.94515 0.95282 1.22680 1.02436 0.95046 0.94289 1.22116 0.95717 0.91554 0.93001 1.45004 1.64575 1.23108 1.02654 1.18621 1.17805 0.98256 1.00853 0.91525 1.25548 1.00469 0.97983 0.99165 1.69935 1.34931 1.32573 1.23207 0.86058 0.82199 0.75645 0.78804 1.20202 1.24226 1.19116 1.21489 0.97699 0.91434 0.87095 1.22594 0.86940 0.91462 1.00034 1.43865 1.05176 1.11261 1.55323 0.72017 0.88162 0.87976 0.87892 0.79765 0.90144 0.88646 0.91003 0.89200 0.90090 0.89913 0.95936 0.94505 0.93019 0.93251 0.93994 0.87365 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.51 71.24 0.75 0.09 16 2 C 0.25 4.28 8.12 138.20 1.12 5.40 16 3 N -0.53 -12.26 11.20 -187.39 -2.10 -14.36 16 4 C 0.06 1.45 11.66 84.10 0.98 2.44 16 5 C -0.10 -2.26 6.87 40.01 0.27 -1.99 16 6 C 0.62 15.76 7.87 86.47 0.68 16.44 16 7 O -0.57 -18.16 17.16 -4.28 -0.07 -18.23 16 8 N -0.62 -13.01 3.33 -813.23 -2.71 -15.72 16 9 C 0.11 2.18 7.10 86.62 0.61 2.79 16 10 C -0.12 -2.57 6.24 31.19 0.19 -2.37 16 11 C -0.07 -1.74 0.79 -51.81 -0.04 -1.78 16 12 C -0.11 -2.92 5.93 31.63 0.19 -2.74 16 13 C 0.10 3.90 4.61 86.92 0.40 4.30 16 14 N -0.63 -27.00 3.25 -692.22 -2.25 -29.25 16 15 C -0.23 -12.25 10.62 84.03 0.89 -11.36 16 16 H 0.07 3.87 8.06 -2.91 -0.02 3.85 16 17 C -0.04 -2.14 5.45 84.86 0.46 -1.67 16 18 N -0.96 -59.09 13.97 21.65 0.30 -58.79 16 19 Si 0.94 45.79 24.23 68.60 1.66 47.45 16 20 H -0.28 -12.73 6.44 99.48 0.64 -12.09 16 21 H -0.31 -15.62 7.11 99.48 0.71 -14.91 16 22 H -0.27 -12.30 6.42 99.48 0.64 -11.66 16 23 C 0.15 4.57 6.40 86.18 0.55 5.12 16 24 C 0.11 1.97 4.92 86.05 0.42 2.39 16 25 N -0.55 -9.18 5.48 -176.12 -0.96 -10.14 16 26 H 0.43 5.22 5.57 -92.71 -0.52 4.70 16 27 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.19 4.11 8.06 -2.91 -0.02 4.09 16 31 H 0.08 1.70 7.85 -2.39 -0.02 1.68 16 32 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.07 1.67 7.49 -2.39 -0.02 1.65 16 34 H 0.09 1.98 7.33 -2.39 -0.02 1.97 16 35 H 0.08 2.05 7.75 -2.39 -0.02 2.03 16 36 H 0.08 2.08 7.70 -2.39 -0.02 2.06 16 37 H 0.02 0.92 5.47 -2.39 -0.01 0.91 16 38 H 0.04 1.59 6.35 -2.39 -0.02 1.57 16 39 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 40 H 0.05 1.41 7.78 -2.38 -0.02 1.40 16 41 H 0.04 1.30 7.38 -2.39 -0.02 1.28 16 42 H 0.11 1.43 7.85 -2.39 -0.02 1.41 16 43 H 0.09 1.32 4.73 -2.39 -0.01 1.31 16 Total: -1.00 -74.52 335.90 1.75 -72.77 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.39 Total: 9.21 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 7.49 Total: 17.06 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -7.72 Total: -128.27 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.07 Total: -18.23 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.66 Total: 47.45 kcal Total: -74.52 1.75 -72.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041144683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.197 kcal (2) G-P(sol) polarization free energy of solvation -74.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds