Wall clock time and date at job start Fri Apr 10 2020 17:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35371 * 127.24572 * 2 1 4 4 N 1.35034 * 107.22924 * 180.02562 * 3 2 1 5 5 H 0.96995 * 124.88506 * 180.02562 * 4 3 2 6 6 N 1.28468 * 110.23105 * 359.97438 * 4 3 2 7 7 C 1.31814 * 110.07177 * 0.02562 * 6 4 3 8 8 C 1.47705 * 126.51590 * 180.02562 * 7 6 4 9 9 O 1.21576 * 120.00207 * 179.97438 * 8 7 6 10 10 N 1.34778 * 120.00345 * 359.97438 * 8 7 6 11 11 C 1.47564 * 125.67174 * 359.68988 * 10 8 7 12 12 C 1.55434 * 104.88141 * 156.03303 * 11 10 8 13 13 C 1.53658 * 101.31089 * 35.82987 * 12 11 10 14 14 C 1.53657 * 111.41672 * 87.06352 * 13 12 11 15 15 C 1.55183 * 101.41982 * 155.02972 * 14 13 12 16 16 N 1.47563 * 105.00304 * 324.50607 * 15 14 13 17 17 C 1.36942 * 125.67052 * 203.82968 * 16 15 14 18 18 H 1.08003 * 119.99587 * 180.02562 * 17 16 15 19 19 C 1.38809 * 120.00133 * 0.04316 * 17 16 15 20 20 N 1.31617 * 120.00123 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00042 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47222 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47256 * 120.00021 * 21 19 17 24 24 H 1.48500 * 109.47245 * 239.99681 * 21 19 17 25 25 C 1.47405 * 108.65207 * 23.86607 * 16 15 14 26 26 C 1.47409 * 125.67722 * 179.97438 * 10 8 7 27 27 H 1.09005 * 109.47204 * 269.99394 * 1 2 3 28 28 H 1.09003 * 109.47776 * 29.99799 * 1 2 3 29 29 H 1.08998 * 109.47091 * 150.00182 * 1 2 3 30 30 H 1.07997 * 126.38756 * 359.96170 * 3 2 1 31 31 H 1.09000 * 110.33477 * 275.02301 * 11 10 8 32 32 H 1.09006 * 110.33379 * 37.26065 * 11 10 8 33 33 H 1.08998 * 111.25897 * 277.75865 * 12 11 10 34 34 H 1.08994 * 110.95329 * 153.76495 * 12 11 10 35 35 H 1.09002 * 111.03107 * 273.06480 * 14 13 12 36 36 H 1.08995 * 111.03783 * 36.99167 * 14 13 12 37 37 H 1.08996 * 110.33172 * 205.62585 * 15 14 13 38 38 H 1.08996 * 110.42416 * 83.43341 * 15 14 13 39 39 H 0.97000 * 120.00530 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.98472 * 238.53320 * 25 16 15 41 41 H 1.09006 * 109.98283 * 117.22898 * 25 16 15 42 42 H 1.08996 * 109.98577 * 301.45775 * 26 10 8 43 43 H 1.09003 * 109.97916 * 62.72071 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5950 0.6154 -0.0006 5 1 4.3886 1.1731 -0.0004 6 7 3.5998 -0.6693 -0.0004 7 6 2.3635 -1.1263 -0.0002 8 6 1.9506 -2.5445 0.0005 9 8 0.7698 -2.8339 0.0010 10 7 2.8829 -3.5178 0.0006 11 6 4.3439 -3.3100 -0.0064 12 6 4.9350 -4.6102 0.6067 13 6 3.9687 -5.6700 0.0550 14 6 4.4121 -6.1670 -1.3296 15 6 3.7618 -7.5753 -1.3733 16 7 3.8446 -8.0774 0.0118 17 6 3.8334 -9.3948 0.3856 18 1 3.8987 -9.6601 1.4305 19 6 3.7386 -10.3890 -0.5784 20 7 3.6589 -10.0657 -1.8517 21 14 3.7227 -12.1860 -0.0684 22 1 3.8226 -12.2819 1.4101 23 1 2.4575 -12.8180 -0.5215 24 1 4.8758 -12.8868 -0.6885 25 6 3.9404 -6.9252 0.9260 26 6 2.6129 -4.9669 0.0019 27 1 -0.3634 -0.0001 1.0277 28 1 -0.3635 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 2.0219 2.1138 -0.0006 31 1 4.7019 -3.1723 -1.0267 32 1 4.6069 -2.4487 0.6077 33 1 4.9050 -4.5827 1.6959 34 1 5.9502 -4.7830 0.2497 35 1 4.0164 -5.5286 -2.1196 36 1 5.4981 -6.2354 -1.3915 37 1 4.3171 -8.2281 -2.0467 38 1 2.7209 -7.5040 -1.6888 39 1 3.5923 -10.7604 -2.5254 40 1 4.8558 -6.9913 1.5140 41 1 3.0738 -6.9008 1.5867 42 1 2.0197 -5.2346 0.8763 43 1 2.0825 -5.2477 -0.9080 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041268662.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:35 Heat of formation + Delta-G solvation = 53.342132 kcal Electronic energy + Delta-G solvation = -25201.841530 eV Core-core repulsion = 21669.639358 eV Total energy + Delta-G solvation = -3532.202173 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.62323 -41.38983 -39.60097 -37.22299 -34.55417 -33.97522 -32.67849 -31.75422 -30.68531 -29.78051 -28.12351 -27.49277 -26.07187 -24.26706 -23.44897 -22.20923 -21.56470 -20.33279 -20.07675 -18.97079 -18.78076 -17.82705 -17.21194 -16.84661 -16.66881 -16.23163 -15.96908 -15.59372 -15.02475 -14.62938 -14.53545 -14.16140 -14.00940 -13.84446 -13.71227 -13.69118 -13.46748 -13.15537 -13.07736 -12.91817 -12.82885 -12.66886 -12.41505 -11.97829 -11.86704 -11.73797 -11.54681 -11.44885 -11.12907 -11.09291 -10.73629 -10.41934 -9.85235 -9.63406 -8.87817 -7.76270 -5.20507 0.50974 1.19842 1.46889 1.48175 1.58462 1.75981 2.22799 2.30785 2.50462 3.26926 3.34915 3.54579 3.59154 3.64115 3.79766 3.94543 4.11843 4.24336 4.31312 4.41074 4.51290 4.58399 4.62331 4.67810 4.73993 4.79548 4.90916 4.91995 4.93416 5.02470 5.04005 5.07805 5.20400 5.26409 5.30546 5.35790 5.47995 5.54583 5.63244 5.82746 6.20129 6.31239 6.45446 6.83413 7.09380 7.11584 7.78632 8.43352 9.26093 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.034817 B = 0.003059 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.010149 B = 9151.833031 C = 9513.600630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.178 4.178 3 C 0.012 3.988 4 N -0.362 5.362 5 H 0.466 0.534 6 N -0.262 5.262 7 C -0.039 4.039 8 C 0.602 3.398 9 O -0.574 6.574 10 N -0.606 5.606 11 C 0.111 3.889 12 C -0.107 4.107 13 C -0.071 4.071 14 C -0.111 4.111 15 C 0.156 3.844 16 N -0.626 5.626 17 C -0.236 4.236 18 H 0.082 0.918 19 C -0.069 4.069 20 N -0.950 5.950 21 Si 0.981 3.019 22 H -0.266 1.266 23 H -0.295 1.295 24 H -0.289 1.289 25 C 0.148 3.852 26 C 0.135 3.865 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.233 0.767 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.073 0.927 38 H -0.022 1.022 39 H 0.246 0.754 40 H 0.044 0.956 41 H 0.017 0.983 42 H 0.056 0.944 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.491 27.798 3.986 28.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.188 4.188 3 C -0.133 4.133 4 N -0.079 5.079 5 H 0.315 0.685 6 N -0.101 5.101 7 C -0.197 4.197 8 C 0.391 3.609 9 O -0.453 6.453 10 N -0.338 5.338 11 C -0.010 4.010 12 C -0.145 4.145 13 C -0.072 4.072 14 C -0.149 4.149 15 C 0.031 3.969 16 N -0.352 5.352 17 C -0.365 4.365 18 H 0.099 0.901 19 C -0.262 4.262 20 N -0.600 5.600 21 Si 0.809 3.191 22 H -0.190 1.190 23 H -0.223 1.223 24 H -0.216 1.216 25 C 0.023 3.977 26 C 0.012 3.988 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.067 0.933 30 H 0.249 0.751 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.125 0.875 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.091 0.909 38 H -0.004 1.004 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.035 0.965 42 H 0.074 0.926 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.893 27.127 3.928 27.685 hybrid contribution -0.951 -1.090 -0.079 1.448 sum 2.943 26.037 3.849 26.484 Atomic orbital electron populations 1.20126 0.88123 1.02876 1.02308 1.20689 0.98223 0.90901 1.09010 1.23273 0.83030 1.01525 1.05495 1.43436 1.09788 1.03673 1.50954 0.68486 1.73534 1.21897 0.95305 1.19328 1.21541 0.91092 0.93721 1.13385 1.17070 0.84145 0.83489 0.76202 1.90745 1.18091 1.83367 1.53059 1.48579 1.08396 1.05486 1.71332 1.22693 0.77154 0.99027 1.02144 1.22738 0.99028 0.91524 1.01254 1.21377 0.94299 0.94524 0.96978 1.22713 1.00900 0.96309 0.95019 1.21757 0.95548 0.92406 0.87237 1.44951 1.86296 1.01189 1.02786 1.19506 1.41937 0.82067 0.92976 0.90053 1.25640 1.02796 1.02239 0.95481 1.70072 1.58454 1.31514 0.99969 0.84971 0.76656 0.79640 0.77829 1.19049 1.22266 1.21588 1.21265 0.98305 0.85809 0.92325 1.21627 0.97047 0.79309 1.00776 0.91559 0.88970 0.93264 0.75111 0.90618 0.87663 0.89632 0.87504 0.90979 0.90086 0.90892 1.00424 0.94416 0.93774 0.96470 0.92607 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.51 9.93 71.23 0.71 -0.80 16 2 C -0.18 -3.64 6.25 -19.73 -0.12 -3.76 16 3 C 0.01 0.12 11.97 83.54 1.00 1.12 16 4 N -0.36 -3.82 6.83 -57.51 -0.39 -4.21 16 5 H 0.47 0.72 8.96 -220.00 -1.97 -1.25 16 6 N -0.26 -5.22 9.35 -48.18 -0.45 -5.67 16 7 C -0.04 -1.02 6.97 42.45 0.30 -0.72 16 8 C 0.60 20.50 7.86 86.75 0.68 21.18 16 9 O -0.57 -23.38 15.45 -3.96 -0.06 -23.44 16 10 N -0.61 -19.31 3.34 -815.87 -2.73 -22.04 16 11 C 0.11 2.71 6.11 87.01 0.53 3.24 16 12 C -0.11 -2.67 5.94 31.65 0.19 -2.49 16 13 C -0.07 -2.43 0.61 -51.87 -0.03 -2.46 16 14 C -0.11 -4.16 5.85 31.56 0.18 -3.98 16 15 C 0.16 7.93 5.85 86.92 0.51 8.44 16 16 N -0.63 -33.10 3.41 -693.06 -2.36 -35.46 16 17 C -0.24 -13.53 10.28 84.03 0.86 -12.67 16 18 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 19 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 20 N -0.95 -58.07 10.09 21.65 0.22 -57.85 16 21 Si 0.98 46.74 29.55 68.60 2.03 48.76 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 C 0.15 6.20 6.51 86.14 0.56 6.76 16 26 C 0.14 4.95 6.02 86.14 0.52 5.47 16 27 H 0.07 1.26 8.14 -2.38 -0.02 1.25 16 28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.05 1.31 6.72 -2.39 -0.02 1.30 16 30 H 0.23 0.01 8.06 -2.91 -0.02 -0.02 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.11 2.26 6.20 -2.38 -0.01 2.24 16 33 H 0.09 1.99 8.08 -2.39 -0.02 1.97 16 34 H 0.11 2.27 7.78 -2.39 -0.02 2.25 16 35 H 0.07 2.51 7.94 -2.39 -0.02 2.49 16 36 H 0.08 2.80 7.82 -2.39 -0.02 2.78 16 37 H 0.07 4.20 5.89 -2.39 -0.01 4.19 16 38 H -0.02 -1.26 8.14 -2.39 -0.02 -1.27 16 39 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 40 H 0.04 1.74 7.86 -2.39 -0.02 1.72 16 41 H 0.02 0.75 7.41 -2.38 -0.02 0.73 16 42 H 0.06 2.19 7.44 -2.39 -0.02 2.17 16 43 H 0.05 2.00 7.78 -2.39 -0.02 1.98 16 Total: -1.00 -79.75 341.63 1.66 -78.09 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -0.94 Total: 6.05 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 6.35 Total: 15.77 kcal Atomic # 7 Polarization: -119.52 SS G_CDS: -5.71 Total: -125.24 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.06 Total: -23.44 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal Total: -79.75 1.66 -78.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041268662.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.432 kcal (2) G-P(sol) polarization free energy of solvation -79.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds